genome.fa.s157.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  32  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7447646--7447887	126	1.9	125	80	7	285	40	10	12	37	1.77
7450456--7450496	21	2.0	21	95	0	73	26	2	26	43	1.67
7456650--7456692	21	2.0	21	86	9	59	60	0	2	37	1.10
7465275--7465307	13	2.5	13	90	0	57	84	0	9	6	0.76
7465272--7465315	23	1.9	23	85	0	61	84	0	11	4	0.77
7465273--7465324	28	1.9	26	85	14	70	82	0	11	5	0.82
7465273--7465317	13	3.3	13	76	11	54	86	0	8	4	0.69
7466718--7466799	43	1.9	42	82	7	103	37	9	15	36	1.81
7467139--7467199	32	1.9	32	96	0	113	29	13	21	36	1.91
7467098--7467241	74	2.0	72	86	2	198	27	15	21	35	1.93
7467171--7467315	41	3.5	41	85	2	184	26	14	21	37	1.92
7467171--7467339	41	4.1	41	84	3	171	27	14	20	37	1.92
7467171--7467338	81	2.0	83	80	4	189	27	14	20	37	1.91
7467327--7467477	42	3.6	42	83	5	180	26	11	17	45	1.82
7468812--7468836	10	2.5	10	100	0	50	72	0	0	28	0.86
7475710--7475747	2	19.5	2	94	5	69	50	0	0	50	1.00
7477640--7477716	38	2.0	38	97	0	145	38	14	27	19	1.90
7478281--7478322	20	2.1	20	86	8	59	64	0	2	33	1.07
7483200--7483258	24	2.5	24	88	0	82	52	1	0	45	1.10
7483152--7483264	58	1.9	59	82	5	140	49	5	3	41	1.42
7483993--7484051	18	3.2	18	76	13	59	55	1	0	42	1.09
7484005--7484072	26	2.7	26	88	4	95	51	0	1	47	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7484004--7484077	9	8.6	9	68	19	50	51	0	1	47	1.09
7484041--7484119	15	4.7	16	67	21	54	53	0	1	45	1.08
7484046--7484117	33	2.1	33	85	15	92	54	0	1	44	1.08
7484041--7484135	18	5.5	18	74	16	69	52	0	2	45	1.12
7484188--7484232	13	3.5	13	84	0	63	33	2	6	57	1.37
7484227--7484313	16	5.5	17	70	21	57	50	1	2	45	1.21
7484159--7484261	26	4.1	25	72	16	70	34	1	3	59	1.27
7487271--7487318	5	9.4	5	81	2	51	52	4	4	39	1.40
7487340--7487373	9	3.8	9	84	0	50	70	0	2	26	1.01
7487352--7487384	15	2.2	15	89	10	50	66	3	3	27	1.21
7487333--7487380	18	2.7	18	78	15	64	66	4	2	27	1.21
7487559--7487917	115	3.1	114	77	5	312	39	13	25	22	1.90
7487644--7487928	115	2.5	115	80	4	315	37	12	25	23	1.90
7487934--7488130	59	3.3	60	74	7	150	38	13	26	20	1.90
7487914--7488130	119	1.8	120	83	2	294	37	13	27	21	1.91
7487914--7488155	119	2.0	119	81	4	283	37	13	27	21	1.91
7493629--7493661	12	2.8	12	90	0	57	24	18	33	24	1.97
7494144--7494301	57	2.7	59	87	4	250	34	12	8	44	1.72
7494326--7494365	17	2.3	17	86	4	53	82	0	7	10	0.84
7494331--7494383	23	2.2	25	86	6	74	81	3	5	9	0.98
7494422--7494461	12	3.2	13	77	22	50	72	7	0	20	1.08
7494810--7494850	18	2.3	18	91	0	64	26	19	29	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7494853--7494884	17	1.9	17	93	6	57	9	25	37	28	1.87
7494908--7494976	30	2.3	30	85	2	86	30	24	23	21	1.99
7494933--7494969	19	2.0	19	94	5	67	35	21	16	27	1.94
7494928--7494987	30	2.0	30	83	0	75	31	23	21	23	1.98
7495336--7495375	20	1.9	22	90	10	66	70	7	5	17	1.30
7495352--7495431	31	2.5	30	80	11	79	72	6	2	18	1.17
7495430--7495541	16	6.9	16	70	23	67	64	5	0	29	1.22
7495491--7495541	23	2.3	23	77	16	61	68	3	1	25	1.17
7495721--7495804	1	84.0	1	81	0	96	2	0	7	90	0.53
7495811--7496154	39	8.6	41	92	5	555	36	24	16	22	1.95
7495811--7496154	80	4.3	80	92	4	554	36	24	16	22	1.95
7497274--7497540	55	4.7	56	94	5	468	35	12	7	45	1.69
7497437--7497523	28	3.1	28	60	21	65	34	13	8	43	1.74
7497274--7497541	113	2.4	113	98	1	513	35	12	7	45	1.69
7497564--7497634	14	5.0	13	73	21	54	77	1	5	15	1.02
7497568--7497634	5	13.8	5	72	9	50	77	1	5	14	1.03
7497578--7497627	11	4.5	11	78	14	57	80	2	4	14	0.95
7497578--7497635	16	3.5	16	79	9	62	79	1	5	13	0.98
7497681--7497719	20	1.9	20	84	5	51	82	7	0	10	0.86
7498175--7498211	19	1.9	19	100	0	74	32	21	18	27	1.97
7498587--7498642	22	2.4	24	75	19	64	69	5	3	21	1.24
7499681--7499762	9	8.8	9	78	16	55	71	0	3	24	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7499681--7499762	18	4.4	19	76	21	68	71	0	3	24	1.01
7499719--7499782	3	21.3	3	77	6	67	62	0	4	32	1.16
7501130--7501277	57	2.6	56	77	8	163	24	25	13	36	1.92
7502964--7503134	67	2.6	63	81	11	177	38	13	12	35	1.82
7503145--7503411	121	2.2	120	79	7	272	38	11	13	36	1.82
7504060--7504116	23	2.4	23	80	8	62	56	7	3	33	1.43
7505821--7505866	24	2.0	22	87	8	65	58	4	0	36	1.18
7505857--7505904	23	2.1	23	84	0	60	54	4	2	39	1.32
7506002--7506063	32	1.9	32	96	0	115	43	6	17	32	1.75
7507166--7507235	31	2.4	31	90	7	110	48	0	0	51	1.00
7507165--7507224	26	2.3	26	82	5	77	50	0	0	50	1.00
7507222--7507250	15	2.0	15	93	6	51	48	0	0	51	1.00
7507210--7507258	17	3.0	16	77	22	57	44	0	0	55	0.99
7507625--7507681	22	2.9	18	72	18	51	59	0	1	38	1.08
7508782--7508818	17	2.1	18	90	5	58	75	0	2	21	0.92
7513219--7513246	2	14.0	2	100	0	56	50	0	0	50	1.00
7513489--7513518	14	2.2	14	94	5	53	56	0	0	43	0.99
7514059--7514084	2	13.0	2	100	0	52	50	0	0	50	1.00
7514459--7514511	21	2.6	20	80	13	63	39	0	1	58	1.09
7514419--7514509	22	4.0	22	68	27	73	37	0	2	60	1.09
7521891--7521916	13	2.0	13	100	0	52	61	7	7	23	1.49
7525851--7525891	14	2.8	14	85	10	55	70	4	2	21	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7527254--7528051	398	2.0	398	100	0	1596	29	28	20	21	1.98
7529226--7529287	24	2.6	22	78	14	61	54	0	0	45	0.99
7529226--7529322	25	4.0	24	75	12	83	55	2	0	42	1.11
7529313--7529351	11	3.5	11	89	6	53	43	2	2	51	1.29
7538631--7538663	16	2.1	16	94	0	57	36	0	0	63	0.95
7540509--7540549	18	2.2	19	86	4	57	12	0	7	80	0.90
7540731--7540782	23	2.3	23	89	0	86	36	9	9	44	1.70
7540673--7540838	81	2.0	81	91	0	269	39	8	11	40	1.72
7540754--7540884	60	2.2	59	87	2	192	41	8	12	37	1.73
7540754--7540946	58	3.3	57	81	11	205	41	7	12	37	1.72
7545844--7546024	63	2.9	63	94	0	308	39	8	21	30	1.83
7546432--7546479	21	2.3	21	89	3	71	47	6	8	37	1.59
7547169--7547501	40	8.0	40	78	8	317	24	12	19	42	1.87
7547153--7547514	83	4.3	84	79	5	358	24	12	19	44	1.84
7547153--7547579	43	10.0	43	80	5	390	23	12	19	44	1.85
7549471--7549549	19	4.1	19	79	14	72	12	0	10	77	1.00
7549493--7549554	12	5.0	12	74	14	54	12	0	9	77	0.99
7549488--7549549	19	3.3	18	84	8	79	12	0	8	79	0.94
7549594--7549826	57	4.0	59	81	7	262	42	6	14	36	1.71
7552722--7552780	2	30.0	2	82	3	66	49	6	1	42	1.39
7552727--7552779	27	2.0	27	92	0	88	50	7	0	41	1.30
7558597--7558622	3	8.7	3	100	0	52	69	0	30	0	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7558660--7558684	3	8.3	3	100	0	50	32	0	0	68	0.90
7559187--7559229	19	2.2	20	91	4	70	27	13	34	23	1.93
7559532--7559582	21	2.5	21	80	3	59	29	0	3	66	1.09
7559640--7559671	16	2.0	16	93	0	55	75	3	0	21	0.95
7575459--7575492	2	17.0	2	100	0	68	50	0	50	0	1.00
7576586--7576690	30	3.5	29	77	19	108	48	1	5	43	1.37
7576613--7576712	30	3.4	29	78	6	112	55	1	6	38	1.31
7578372--7578453	40	2.0	40	88	0	119	25	4	26	42	1.75
7583781--7583825	24	1.9	23	82	13	56	55	0	0	44	0.99
7590445--7590524	28	2.9	30	75	14	73	43	2	1	52	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84