genome.fa.s157.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  73  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15761654--15761716	31	2.0	31	84	0	81	60	4	4	30	1.38
15762334--15762377	15	2.9	15	86	3	61	50	2	0	47	1.13
15772245--15773485	624	2.0	624	95	0	2223	36	12	15	35	1.86
15779545--15779579	17	2.0	18	88	5	54	51	2	0	45	1.16
15780035--15780061	3	9.0	3	100	0	54	33	0	0	66	0.92
15784606--15784674	16	4.4	16	78	8	63	79	1	8	10	0.99
15785860--15785920	22	2.7	22	79	5	68	44	6	8	40	1.60
15786074--15786184	17	6.6	17	77	7	102	33	13	10	42	1.79
15786075--15786138	16	3.9	16	91	2	101	32	12	10	43	1.77
15786285--15786399	57	2.0	57	84	3	151	31	14	10	43	1.79
15786480--15786539	18	3.2	18	77	13	50	38	8	3	50	1.49
15786546--15786640	22	4.5	21	73	6	75	41	7	6	45	1.57
15789956--15790030	31	2.4	31	86	6	98	44	6	9	40	1.63
15791463--15791492	11	2.6	12	94	5	53	73	0	0	26	0.84
15792444--15792503	19	3.2	19	80	2	68	53	10	11	25	1.68
15792524--15792662	18	7.8	18	79	3	129	49	11	8	30	1.69
15792648--15792764	57	2.0	58	85	1	155	44	12	5	36	1.67
15792846--15792933	44	2.0	44	82	6	106	50	14	5	29	1.66
15792947--15793010	21	3.0	21	86	4	67	45	9	7	37	1.66
15792963--15793011	21	2.3	21	92	0	80	44	8	8	38	1.64
15793006--15793078	21	3.3	21	72	10	74	43	16	9	30	1.80
15793002--15793271	46	5.9	45	80	5	265	44	15	9	31	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15793193--15793243	23	2.3	22	83	9	68	43	15	5	35	1.71
15793858--15793923	26	2.6	28	71	26	65	50	16	7	25	1.72
15793817--15794015	71	2.8	71	79	8	174	45	18	9	27	1.79
15793931--15794206	71	3.9	71	83	1	338	46	17	9	26	1.79
15793931--15794206	142	1.9	143	86	2	394	46	17	9	26	1.79
15795235--15795281	18	2.6	18	82	3	58	10	6	4	78	1.06
15795664--15795711	17	2.7	17	84	12	53	8	18	2	70	1.22
15805362--15805390	2	14.5	2	100	0	58	51	0	0	48	1.00
15805397--15805439	19	2.1	19	83	12	50	2	16	2	79	0.95
15810956--15811072	18	6.6	17	75	18	82	51	0	0	47	1.06
15810959--15811085	34	3.7	35	72	15	95	51	0	1	47	1.10
15810981--15811031	16	3.1	16	78	13	59	49	0	0	50	1.00
15810977--15811075	17	5.8	17	76	14	64	50	0	1	48	1.07
15811050--15811093	16	2.5	18	82	14	56	54	2	4	38	1.33
15811090--15811174	12	7.4	12	68	22	58	41	0	0	58	0.98
15811104--15811183	15	5.5	15	66	19	62	43	0	0	56	0.99
15811108--15811156	22	2.1	24	85	7	66	44	0	0	55	0.99
15811388--15811414	14	1.9	14	100	0	54	40	0	0	59	0.98
15811924--15811958	17	2.1	17	88	0	52	34	11	0	54	1.37
15812692--15812766	20	3.9	19	74	8	62	60	2	0	37	1.11
15812692--15812750	19	3.1	18	80	7	55	57	1	0	40	1.09
15813207--15813258	26	2.0	26	100	0	104	30	15	0	53	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15817775--15817825	14	3.2	16	81	13	61	62	3	0	33	1.13
15817782--15817825	15	2.9	15	80	10	54	61	4	0	34	1.16
15818088--15818113	2	13.0	2	100	0	52	50	0	0	50	1.00
15822837--15822885	14	3.4	14	74	20	55	61	0	2	36	1.08
15822836--15822894	30	2.0	30	90	6	93	57	1	3	37	1.25
15826173--15826223	25	2.0	25	81	7	59	50	3	13	31	1.60
15831237--15831303	34	2.0	34	87	0	98	47	5	10	35	1.62
15831257--15831321	34	1.9	34	83	0	85	50	7	9	32	1.63
15838920--15839193	137	2.0	136	89	0	413	38	5	25	30	1.79
15839976--15840018	2	21.5	2	95	0	77	48	2	0	48	1.14
15845863--15845915	26	2.0	26	92	7	90	35	7	1	54	1.40
15845924--15846007	30	2.8	30	78	3	89	40	10	2	46	1.52
15846049--15846127	29	2.7	30	78	7	92	59	1	5	34	1.27
15846399--15846453	22	2.5	22	82	8	58	67	0	1	30	1.01
15846409--15846463	22	2.3	24	84	9	69	61	0	3	34	1.13
15848618--15848660	2	21.5	2	100	0	86	51	0	48	0	1.00
15850294--15850883	296	2.0	296	97	1	1130	32	20	14	33	1.93
15852230--15852280	25	2.0	25	92	0	84	17	25	17	39	1.92
15852457--15852517	31	2.0	31	100	0	122	16	19	11	52	1.74
15852973--15853094	60	2.0	60	95	0	217	33	18	14	33	1.91
15855282--15855670	195	2.0	195	94	0	688	33	16	21	28	1.95
15860941--15860965	1	25.0	1	100	0	50	0	0	100	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15862884--15862948	27	2.4	27	87	5	87	38	41	3	16	1.64
15864331--15864399	33	2.1	33	88	0	102	37	14	21	26	1.92
15869806--15869845	21	2.0	21	90	5	64	52	10	0	37	1.35
15885887--15885925	17	2.2	18	86	4	53	28	7	2	61	1.37
15886411--15886444	12	2.9	11	84	16	50	35	32	2	29	1.73
15896122--15896156	12	2.9	12	84	16	54	25	0	0	74	0.82
15898573--15898597	11	2.3	11	100	0	50	24	16	0	60	1.36
15909930--15909973	21	2.2	20	84	8	54	34	0	20	45	1.51
15911107--15911136	14	2.1	14	93	0	51	53	30	0	16	1.44
15913393--15913417	2	12.5	2	100	0	50	48	0	0	52	1.00
15918904--15919014	54	2.1	54	98	0	213	30	18	18	31	1.96
15925161--15925202	21	2.0	21	95	0	75	50	0	7	42	1.30
15929523--15929556	17	1.9	17	88	5	50	26	8	0	64	1.22
15929645--15929687	23	1.9	22	85	4	59	9	4	4	81	0.97
15938152--15938211	30	2.0	30	100	0	120	36	20	6	36	1.79
15946473--15946511	20	2.0	19	85	5	51	61	7	0	30	1.24
15951364--15951394	3	10.3	3	100	0	62	0	0	32	67	0.91
15953615--15953643	8	3.6	8	100	0	58	13	0	0	86	0.58
15964186--15964215	14	2.1	14	100	0	60	43	0	20	36	1.52
15964671--15964703	2	16.5	2	100	0	66	48	0	0	51	1.00
15970623--15970672	19	2.9	16	75	16	55	38	0	0	62	0.96
15970608--15970659	24	2.2	24	86	3	79	36	1	0	61	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15973335--15973393	29	2.0	29	93	0	100	49	8	5	37	1.55
15978424--15978460	2	18.5	2	100	0	74	51	0	0	48	1.00
15979068--15979163	30	3.2	28	76	13	79	54	5	4	36	1.42
15979074--15979157	30	2.8	30	78	8	84	52	5	4	36	1.47
15985235--15985316	39	2.1	39	88	0	119	53	14	7	24	1.66
15987414--15987455	22	1.9	22	95	0	75	42	7	4	45	1.52
15987417--15987466	22	2.2	22	85	7	64	46	6	4	44	1.47
15988053--15988126	30	2.5	31	82	6	98	62	0	0	37	0.96
15988226--15988269	15	2.6	17	79	17	56	31	2	0	65	1.05
15988346--15988385	18	2.2	19	86	13	57	55	0	7	37	1.29
15991061--15991145	39	2.2	40	91	6	138	16	0	60	23	1.36
15991061--15991155	39	2.4	39	87	6	113	15	0	61	23	1.34
15991379--15991415	20	1.9	20	88	5	58	35	2	5	56	1.36
15991641--15991689	25	1.9	26	91	4	82	46	2	10	40	1.49
15992431--15992477	25	1.9	24	86	4	67	40	4	4	51	1.41
15995101--15995137	6	6.2	6	90	0	56	21	0	48	29	1.50
15995100--15995135	18	2.0	18	94	0	63	25	0	47	27	1.52
15995481--15995605	18	6.9	18	73	13	105	32	35	4	28	1.78
15995485--15995527	21	2.0	21	95	0	77	25	44	2	27	1.66
15995509--15995606	33	2.9	33	83	4	124	35	31	5	27	1.79
15997805--15997843	13	3.1	13	81	3	53	56	0	0	43	0.99
15997822--15997860	18	2.3	18	86	8	55	69	0	0	30	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16000465--16000492	14	2.0	14	100	0	56	28	14	42	14	1.84
16002460--16002498	17	2.3	17	95	0	69	33	15	10	41	1.81
16003524--16003587	29	2.2	29	88	2	94	29	3	1	65	1.17
16003658--16003736	30	2.7	30	84	5	90	62	2	3	31	1.27
16003679--16003754	29	2.6	29	85	6	91	61	1	1	35	1.12
16007092--16007148	29	2.1	28	84	12	75	70	0	1	28	0.98
16007096--16007148	20	2.7	19	78	18	56	69	0	1	28	0.99
16007329--16007367	6	6.3	6	86	13	53	30	2	0	66	1.05
16007330--16007385	20	2.8	20	84	10	69	35	1	1	60	1.17
16009622--16009655	6	5.7	6	92	0	59	0	17	64	17	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84