genome.fa.s157.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  66  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14644579--14645678	130	8.5	129	76	5	867	36	8	17	37	1.80
14644695--14647198	259	9.8	257	71	12	1000	37	8	16	38	1.78
14645728--14646024	131	2.3	130	80	6	318	39	9	14	36	1.78
14646154--14647236	130	8.3	130	77	6	854	36	8	15	39	1.78
14646154--14647236	390	2.8	386	79	5	1094	36	8	15	39	1.78
14646106--14647236	519	2.2	520	79	6	1179	36	8	15	39	1.77
14647480--14648200	281	2.6	281	86	6	962	35	7	16	40	1.77
14647966--14648129	75	2.2	77	83	4	199	32	7	18	41	1.79
14648050--14649929	259	7.3	259	74	9	1070	36	8	16	39	1.78
14648138--14650913	516	5.4	512	74	11	1359	36	7	16	39	1.77
14648065--14651151	646	4.8	639	74	11	1765	36	7	16	39	1.77
14648043--14649929	130	14.6	129	75	7	1301	36	8	16	39	1.78
14649830--14650030	98	2.0	99	81	4	237	36	6	18	38	1.77
14649574--14650231	358	1.8	355	82	6	837	37	6	15	39	1.74
14649931--14651156	260	4.6	260	74	10	740	37	7	16	38	1.77
14649931--14650632	130	5.4	128	78	5	599	38	7	16	37	1.76
14649930--14650648	389	1.8	390	80	4	869	38	7	16	37	1.77
14650699--14651158	131	3.5	131	77	8	449	35	7	16	40	1.77
14651059--14651263	106	1.9	106	83	7	261	36	6	17	40	1.75
14651530--14651860	130	2.5	131	76	6	339	37	6	14	41	1.72
14651955--14651994	20	2.0	21	85	9	57	52	7	0	40	1.30
14653394--14653473	35	2.2	37	80	10	94	36	22	8	32	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14656902--14656941	21	1.9	21	89	0	62	62	20	15	2	1.43
14659738--14659837	1	100.0	1	69	0	56	4	2	10	84	0.84
14659738--14659835	28	3.6	27	76	12	94	4	2	10	83	0.85
14660418--14660478	23	2.7	23	94	0	113	32	16	21	29	1.95
14660494--14660537	23	1.9	23	90	0	70	31	25	20	22	1.98
14663066--14663165	1	100.0	1	67	0	56	5	2	9	84	0.85
14663067--14663165	13	7.5	13	73	17	62	5	2	9	83	0.86
14663049--14663165	46	2.5	47	84	11	145	5	2	9	82	0.90
14663048--14663163	9	13.9	8	72	16	58	5	2	9	82	0.91
14663049--14663165	63	1.9	61	82	10	148	5	2	9	82	0.90
14663049--14663131	21	4.0	21	78	10	80	4	2	10	81	0.92
14663048--14663155	15	6.5	16	72	13	60	4	2	10	82	0.91
14663046--14663165	17	6.9	16	72	18	73	5	3	9	82	0.92
14663661--14663889	23	10.0	23	71	8	135	32	16	19	31	1.94
14663736--14663864	69	1.9	69	83	0	168	34	17	17	30	1.94
14663719--14663929	46	4.6	46	77	2	201	33	17	19	29	1.95
14663696--14664000	23	13.3	23	69	7	113	30	17	22	29	1.97
14663910--14664037	69	1.9	68	81	4	159	25	21	25	27	1.99
14664227--14664279	16	3.3	15	80	14	61	3	13	1	81	0.92
14664518--14664583	26	2.6	26	83	7	82	30	15	18	36	1.91
14667127--14667493	143	2.6	141	77	10	343	39	12	13	34	1.82
14667599--14667623	10	2.5	10	100	0	50	28	20	20	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14671196--14671361	83	2.0	83	90	4	264	32	16	11	39	1.85
14672457--14672490	17	2.1	17	89	10	54	26	11	5	55	1.58
14678380--14678435	23	2.5	22	74	8	58	28	8	5	57	1.52
14681844--14682003	80	2.0	80	91	0	257	30	11	13	45	1.79
14689819--14689878	29	2.1	29	87	0	84	40	13	6	40	1.71
14694193--14694295	30	3.4	31	81	8	122	35	14	6	42	1.72
14701168--14701209	22	1.9	22	85	9	59	54	0	2	42	1.13
14701203--14701253	21	2.3	22	83	12	61	62	0	1	35	1.06
14702140--14702296	80	2.0	80	84	2	208	40	7	4	47	1.51
14706581--14706641	30	2.0	30	96	0	113	27	3	6	62	1.36
14706492--14706721	121	1.9	120	85	3	318	33	4	12	49	1.61
14706761--14706854	47	2.0	47	85	4	127	41	7	13	37	1.73
14711464--14711501	11	3.4	11	86	13	51	7	13	7	71	1.31
14714701--14714770	16	4.7	16	70	21	62	32	1	1	64	1.11
14714753--14714806	22	2.3	24	90	9	85	46	0	0	53	1.00
14718279--14718324	23	2.0	23	100	0	92	43	4	26	26	1.73
14731787--14732401	130	4.7	129	75	9	459	36	7	16	40	1.76
14731787--14732372	261	2.3	256	79	9	600	37	6	16	39	1.75
14732424--14732458	14	2.5	14	95	0	61	48	2	14	34	1.58
14732417--14732456	14	2.7	15	84	11	55	45	5	12	37	1.64
14732731--14732831	23	4.4	22	84	8	114	42	2	0	53	1.22
14732753--14732838	8	11.7	7	77	15	77	43	1	1	54	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14732741--14732837	46	2.0	49	84	5	128	43	3	1	52	1.23
14732753--14732839	31	2.9	31	86	3	115	43	1	1	54	1.15
14733022--14733048	14	1.9	14	100	0	54	37	0	11	51	1.37
14733077--14733687	129	4.7	128	76	8	504	37	5	15	40	1.72
14733077--14733687	258	2.4	261	83	5	760	37	5	15	40	1.72
14733974--14734379	131	3.1	131	76	5	344	39	7	12	40	1.72
14734055--14734631	130	4.5	130	76	6	358	38	7	13	41	1.72
14734230--14734847	130	4.8	128	75	10	372	37	6	15	40	1.73
14734522--14734880	126	2.8	123	80	10	366	36	4	16	42	1.69
14734897--14734938	21	2.0	21	100	0	84	38	0	14	47	1.44
14734950--14735260	130	2.4	129	84	4	385	42	7	10	39	1.67
14735572--14735633	3	21.7	3	71	15	51	66	0	3	30	1.08
14735572--14735623	11	5.1	11	77	15	58	65	0	1	32	1.04
14735572--14735621	19	2.7	19	90	3	75	66	0	2	32	1.03
14735548--14735633	22	4.1	20	72	15	66	69	0	2	27	1.00
14738302--14738349	24	1.9	25	87	8	71	39	0	8	52	1.32
14740047--14740160	57	2.0	57	100	0	228	31	8	19	40	1.82
14741755--14741800	3	15.3	3	100	0	92	65	0	0	34	0.93
14745753--14746145	145	2.7	144	84	5	517	42	13	13	30	1.83
14746655--14746912	129	2.0	130	81	6	301	35	8	17	39	1.79
14747228--14747643	213	2.0	213	81	4	491	37	8	16	38	1.78
14747428--14747712	130	2.2	130	80	12	318	36	7	18	37	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14747798--14753855	130	46.8	128	71	11	2055	35	8	17	39	1.79
14748993--14749239	128	1.9	128	81	4	302	35	7	16	40	1.76
14747798--14753895	259	23.6	258	74	8	3834	35	8	17	39	1.79
14753924--14755057	129	8.8	127	75	7	739	36	8	17	38	1.79
14753924--14755143	259	4.7	256	76	7	855	36	8	17	37	1.80
14755155--14756095	129	7.3	130	78	4	873	35	7	17	38	1.79
14755159--14756095	259	3.6	259	79	4	863	35	7	17	38	1.79
14755155--14757232	130	16.1	129	71	11	948	35	8	17	38	1.80
14756818--14757050	129	1.8	129	80	5	283	35	6	18	39	1.77
14760879--14760912	16	2.1	16	88	0	50	29	17	11	41	1.85
14761020--14761067	21	2.2	21	85	10	62	25	6	14	54	1.63
14763187--14763299	54	2.1	54	80	3	120	49	5	2	42	1.39
14763489--14763527	17	2.3	17	90	0	60	48	2	0	48	1.15
14763490--14763537	24	1.9	26	87	8	73	47	2	0	50	1.12
14763631--14763663	17	1.9	17	93	0	57	48	6	0	45	1.27
14764065--14764101	19	1.9	19	94	0	65	32	0	10	56	1.34
14767274--14767316	18	2.3	18	88	11	61	27	0	0	72	0.85
14767274--14767332	18	3.2	18	77	15	59	30	0	1	67	1.00
14769555--14769605	26	2.0	26	88	7	77	54	1	0	43	1.11
14769711--14769739	5	5.8	5	100	0	58	58	0	0	41	0.98
14769714--14769747	15	2.3	15	89	0	50	58	0	2	38	1.13
14769978--14770013	17	2.1	17	89	5	54	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14770307--14770335	2	15.0	2	92	7	51	51	0	0	48	1.00
14769205--14770339	593	1.9	592	92	1	1702	44	7	5	42	1.56
14774695--14774732	18	2.1	18	95	0	67	28	15	0	55	1.41
14776341--14776396	19	2.8	20	73	24	55	69	7	0	23	1.12
14776771--14776807	19	1.9	19	88	0	56	67	2	0	29	1.04
14776795--14776855	6	10.3	6	73	16	56	55	1	0	42	1.09
14776804--14776851	25	1.9	25	87	8	71	56	2	0	41	1.11
14776769--14776866	12	8.8	11	71	17	69	57	2	0	40	1.10
14779249--14779283	17	1.9	17	88	11	52	14	2	2	80	0.95
14783720--14784032	161	1.9	161	99	0	617	46	21	11	21	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84