genome.fa.s157.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  84  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17998615--17998675	28	2.2	28	79	5	70	3	18	3	75	1.08
17999564--17999635	32	2.1	38	82	15	93	37	0	2	59	1.12
17999875--17999910	19	1.9	18	88	5	54	5	8	2	83	0.89
18001493--18001536	22	2.0	22	81	0	52	9	9	4	77	1.12
18001803--18001841	10	3.8	10	86	3	51	28	0	0	71	0.86
18001803--18001853	20	2.6	21	84	9	63	31	0	0	68	0.90
18002167--18002234	29	2.3	29	89	0	100	50	8	13	27	1.71
18002164--18002245	29	2.8	28	78	7	92	48	8	13	29	1.72
18002499--18002524	11	2.4	11	100	0	52	34	0	0	65	0.93
18002693--18002723	9	3.4	9	90	0	53	48	9	6	35	1.62
18002693--18002736	18	2.4	18	92	0	70	43	11	9	36	1.72
18004895--18004920	2	13.0	2	100	0	52	0	50	0	50	1.00
18012329--18012354	8	3.2	8	100	0	52	11	0	0	88	0.52
18013291--18013322	2	16.0	2	100	0	64	50	0	0	50	1.00
18018125--18018195	30	2.4	29	79	11	81	38	4	0	57	1.18
18028732--18028775	22	2.0	22	95	0	79	29	18	15	36	1.92
18032106--18033755	695	2.4	696	89	2	2487	35	15	11	37	1.84
18034589--18034642	28	1.9	28	84	0	72	22	7	24	46	1.77
18034535--18034755	79	2.8	80	86	3	313	22	7	26	43	1.79
18034535--18034755	80	2.8	78	86	3	307	22	7	26	43	1.79
18042230--18042284	26	2.1	27	86	3	76	41	16	1	40	1.59
18045453--18045479	2	13.5	2	100	0	54	51	48	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18045506--18045550	15	2.9	16	80	6	56	33	11	2	53	1.49
18051518--18051575	24	2.6	23	73	15	59	43	1	0	55	1.10
18051571--18051604	13	2.6	13	85	0	50	50	2	2	44	1.32
18052091--18052124	17	2.1	16	94	5	59	52	0	0	47	1.00
18052092--18052139	19	2.5	20	79	3	53	52	0	2	45	1.12
18055592--18055637	3	15.3	3	100	0	92	32	0	0	67	0.91
18055863--18055909	13	3.5	13	78	13	51	17	4	2	76	1.04
18055863--18055915	27	2.0	27	85	7	72	15	5	3	75	1.13
18059460--18059724	143	1.9	143	80	4	311	33	12	10	42	1.78
18061229--18061286	26	2.2	26	84	0	71	43	32	0	24	1.55
18061302--18061351	26	1.9	26	88	8	75	46	26	4	24	1.70
18061310--18061356	20	2.3	20	77	0	58	44	29	2	23	1.65
18061272--18061459	7	28.7	7	66	15	71	42	33	2	21	1.67
18061397--18061468	26	2.8	25	76	17	67	40	43	1	15	1.55
18065541--18065581	18	2.3	18	100	0	82	31	4	41	21	1.74
18065829--18068284	492	5.0	492	97	0	4616	22	14	19	43	1.88
18065829--18068284	982	2.5	984	97	0	4616	22	14	19	43	1.88
18072861--18072921	30	2.0	30	100	0	122	39	13	13	34	1.83
18075173--18075238	2	33.5	2	77	8	64	42	3	3	51	1.32
18089358--18089391	7	5.0	7	85	7	52	85	2	0	11	0.71
18089358--18089391	13	2.5	14	85	9	52	85	2	0	11	0.71
18090387--18090412	12	2.2	12	100	0	52	69	0	0	30	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18090477--18090524	24	2.1	22	88	7	69	8	16	0	75	1.04
18093963--18094051	43	2.1	43	86	0	124	25	29	14	30	1.95
18096795--18096955	40	3.9	40	70	14	119	46	11	5	36	1.64
18096872--18097051	97	1.8	98	85	2	254	44	11	8	35	1.72
18098537--18098780	131	1.9	132	84	3	332	32	13	9	44	1.76
18099526--18099620	46	2.1	46	91	0	154	38	25	4	31	1.75
18099924--18099961	10	3.9	10	82	6	51	76	2	13	7	1.11
18099924--18099961	19	2.0	19	89	0	58	76	2	13	7	1.11
18101534--18101685	71	2.2	70	82	8	175	26	9	19	44	1.81
18101875--18102034	40	4.1	39	75	7	135	38	10	15	36	1.80
18102264--18102332	22	3.1	22	72	4	75	34	2	17	44	1.64
18102508--18102612	21	4.9	21	76	10	95	27	6	17	48	1.72
18102559--18102653	44	2.2	44	80	3	111	30	8	17	43	1.79
18102924--18102964	17	2.4	17	87	0	55	34	9	7	48	1.64
18103047--18103085	17	2.2	18	86	4	53	41	17	2	38	1.64
18103132--18103225	42	2.2	44	84	7	122	35	9	11	43	1.74
18103132--18103193	20	2.9	22	73	9	65	38	9	11	40	1.74
18103135--18103206	22	3.4	22	72	14	69	40	9	8	41	1.68
18103132--18103242	44	2.6	42	83	8	118	36	9	11	43	1.73
18103735--18109895	7	881.9	7	98	1	12021	14	0	42	42	1.45
18113513--18113575	28	2.3	26	78	10	65	38	6	4	50	1.49
18114015--18114051	19	2.0	19	89	5	58	13	0	40	45	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18114739--18115107	178	2.1	178	91	1	605	32	15	19	33	1.93
18116170--18116210	15	2.7	15	84	3	55	21	2	0	75	0.92
18116154--18116252	48	2.0	48	82	5	119	19	6	3	71	1.20
18117218--18117260	20	2.2	20	87	8	61	25	11	6	55	1.60
18127814--18128111	64	4.6	65	80	4	266	21	18	13	47	1.82
18127814--18128092	129	2.2	129	79	5	296	20	18	13	46	1.83
18128401--18128437	3	12.3	3	94	0	65	32	2	0	64	1.07
18128818--18128862	21	2.1	21	91	0	72	53	6	11	28	1.61
18129192--18129275	24	3.4	25	76	20	79	22	4	0	72	1.03
18129228--18129274	12	3.9	12	81	15	53	19	6	0	74	1.03
18129194--18129275	23	3.4	24	77	19	73	21	4	0	73	1.02
18132893--18133045	57	2.6	58	83	8	195	49	3	11	35	1.55
18137738--18137794	20	2.6	21	83	10	62	31	15	12	40	1.85
18138052--18138163	46	2.5	45	80	1	116	37	5	13	43	1.67
18138345--18138486	34	4.2	33	79	12	112	37	11	11	40	1.77
18138397--18138545	34	4.4	33	74	7	120	39	12	9	38	1.75
18138393--18138545	51	3.0	51	77	1	164	40	11	9	38	1.74
18138308--18138524	17	12.6	17	70	10	86	39	11	10	38	1.76
18138566--18138598	17	1.9	17	100	0	66	42	6	9	42	1.61
18138995--18139038	3	14.7	3	100	0	88	31	0	0	68	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84

The End!