genome.fa.s157.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  51  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11755256--11755289	17	2.0	17	94	0	59	44	35	2	17	1.64
11756222--11757124	72	12.8	72	71	13	427	37	11	7	43	1.69
11756528--11757119	141	4.1	142	74	10	447	38	10	7	43	1.67
11756260--11756763	275	1.8	274	82	9	652	38	11	7	42	1.70
11757151--11757181	16	1.9	16	93	0	53	41	3	0	54	1.16
11757162--11757222	32	1.9	31	93	3	104	37	3	1	57	1.25
11769534--11769562	14	2.0	15	93	6	51	68	6	0	24	1.13
11770568--11770707	40	3.4	41	76	9	106	45	15	10	30	1.78
11770610--11770710	43	2.4	44	85	5	127	47	12	9	29	1.74
11770610--11770755	44	3.4	43	81	9	129	48	12	8	30	1.71
11771075--11771145	33	2.2	33	89	0	106	33	15	15	35	1.89
11782228--11782279	23	2.3	23	93	0	86	34	7	5	51	1.54
11782669--11782776	4	27.2	4	69	15	64	69	5	3	21	1.25
11782721--11782776	23	2.4	23	87	3	85	73	5	0	21	1.03
11783055--11783087	16	1.9	18	88	11	52	3	30	0	66	1.06
11787378--11787628	57	4.2	57	78	11	252	49	13	9	27	1.73
11787408--11787685	122	2.3	123	84	5	357	48	14	9	27	1.74
11792158--11792240	41	2.0	41	95	0	148	42	16	12	28	1.84
11792441--11792580	70	2.0	70	90	0	217	35	30	12	21	1.90
11795433--11795506	33	2.2	34	80	7	87	47	1	12	39	1.49
11796292--11796320	13	2.1	14	93	6	51	58	0	0	41	0.98
11798113--11798328	108	2.0	108	89	1	335	37	13	25	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11803096--11803165	30	2.3	29	92	4	113	37	25	4	32	1.76
11806774--11806841	33	2.1	33	94	0	118	26	14	17	41	1.88
11812376--11812417	21	2.0	22	86	9	61	45	0	4	50	1.23
11812431--11812470	20	2.0	20	85	9	55	52	7	2	37	1.43
11816640--11816695	18	3.1	18	80	15	62	51	5	5	37	1.47
11823674--11823715	2	20.5	2	90	4	66	47	2	2	47	1.28
11824684--11824709	2	13.0	2	100	0	52	50	0	0	50	1.00
11824829--11824919	41	2.2	41	92	2	146	36	1	3	59	1.21
11824886--11824943	19	3.1	19	80	11	59	32	5	1	60	1.29
11824886--11824943	18	3.1	19	80	7	57	32	5	1	60	1.29
11827218--11827264	14	3.7	13	81	10	53	46	0	0	53	1.00
11827335--11827381	23	2.1	23	84	11	62	29	8	2	59	1.39
11828803--11828849	2	23.5	2	86	0	67	48	4	0	46	1.21
11828799--11828853	8	6.9	8	91	0	74	49	7	0	43	1.30
11828799--11828853	16	3.4	16	87	0	83	49	7	0	43	1.30
11829521--11829602	42	2.0	41	83	9	103	42	1	2	53	1.21
11831583--11831617	17	2.1	17	89	10	54	22	2	0	74	0.95
11831585--11831617	16	2.0	17	88	5	50	21	3	0	75	0.93
11846186--11846212	6	4.5	6	100	0	54	18	0	33	48	1.49
11847425--11847484	25	2.4	25	81	10	70	71	5	3	20	1.19
11852294--11852318	13	1.9	13	100	0	50	48	0	0	52	1.00
11853426--11853482	29	2.0	27	86	6	78	52	1	0	45	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11885562--11885632	33	2.2	32	85	7	90	47	1	14	36	1.52
11885786--11885810	3	8.3	3	100	0	50	68	0	0	32	0.90
11889128--11889181	28	2.0	28	81	3	65	35	7	12	44	1.71
11893255--11893358	52	2.0	51	83	9	131	46	6	18	28	1.74
11894365--11894395	15	2.1	15	100	0	62	51	6	29	12	1.65
11896809--11896866	23	2.6	22	78	10	64	36	1	6	55	1.37
11896816--11896884	23	3.1	21	81	6	66	33	1	4	60	1.25
11903130--11903192	28	2.3	27	78	13	74	28	3	6	61	1.36
11903366--11903412	21	2.2	21	96	0	85	42	2	0	55	1.12
11905209--11905258	21	2.2	22	82	10	57	58	0	2	40	1.10
11908455--11908516	29	2.1	29	93	0	106	22	19	17	40	1.91
11909537--11909570	16	2.1	17	88	5	52	47	17	17	17	1.84
11913952--11914031	41	2.0	41	92	2	135	25	16	26	32	1.96
11921340--11921380	21	2.0	20	86	9	57	46	0	0	53	1.00
11924074--11924129	20	2.8	20	78	10	60	62	10	0	26	1.28
11924214--11924253	18	2.2	19	86	4	55	47	7	0	45	1.31
11924263--11924338	28	2.7	27	73	15	73	65	5	2	26	1.27
11924537--11924605	9	7.3	9	70	14	50	36	1	5	56	1.32
11924628--11924706	21	3.8	21	69	15	65	37	1	5	55	1.30
11926057--11926091	14	2.5	15	86	13	56	40	0	0	60	0.97
11927671--11927710	16	2.6	15	84	7	53	50	0	5	45	1.23
11929171--11929517	44	8.1	44	73	9	180	45	4	9	40	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11929171--11929639	22	21.6	22	65	12	112	45	4	10	39	1.60
11929337--11929465	41	3.1	41	82	2	141	44	3	8	43	1.53
11929408--11929552	65	2.2	65	83	7	170	46	5	10	37	1.61
11929558--11929597	19	2.1	19	95	0	71	45	5	12	37	1.64
11929581--11929665	44	1.9	44	82	0	107	48	5	8	37	1.58
11929664--11929820	22	7.2	22	71	15	94	44	8	9	36	1.68
11930160--11930258	44	2.2	45	82	5	112	48	8	7	36	1.60
11930241--11930388	64	2.3	66	81	6	169	49	10	8	31	1.67
11930326--11930407	22	3.8	22	73	1	76	50	6	9	34	1.60
11930475--11930528	22	2.5	22	87	0	72	55	3	9	31	1.49
11930477--11930560	44	1.9	44	82	4	107	52	3	8	35	1.49
11930477--11930560	22	3.8	22	78	6	71	52	3	8	35	1.49
11930589--11930735	22	6.3	22	71	14	71	44	4	8	42	1.54
11930621--11930683	30	2.1	30	82	5	74	44	6	6	42	1.55
11930673--11930755	11	7.5	11	76	0	85	54	1	4	39	1.30
11930664--11930756	33	2.8	33	70	6	89	52	2	4	40	1.33
11930664--11930808	44	3.3	44	78	1	139	51	5	5	37	1.49
11930664--11930755	22	4.2	22	82	0	103	53	1	4	41	1.28
11930673--11930808	22	6.2	22	75	3	76	51	5	5	36	1.50
11931036--11931077	21	2.0	21	86	9	59	52	9	4	33	1.55
11931060--11931191	21	6.2	20	71	19	65	50	9	5	35	1.57
11933150--11933182	17	1.9	17	100	0	66	30	27	12	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11937254--11937303	3	16.7	3	82	0	55	6	0	72	22	1.07
11937254--11937303	12	4.2	12	86	0	64	6	0	72	22	1.07
11937370--11937417	3	16.0	3	82	0	51	6	2	68	22	1.23
11937370--11937417	12	4.0	12	83	0	60	6	2	68	22	1.23
11937254--11937516	120	2.2	120	89	0	400	12	4	58	24	1.53
11938730--11938780	14	3.3	15	76	20	52	43	0	3	52	1.19
11938733--11938770	15	2.6	14	88	8	58	44	0	2	52	1.14
11958238--11958535	152	1.9	154	82	4	370	43	6	5	44	1.51
11961510--11961540	2	15.5	2	100	0	62	48	0	0	51	1.00
11969447--11969499	22	2.4	21	87	9	79	67	0	0	32	0.91
11972612--11972681	35	2.0	35	94	0	122	24	10	24	41	1.85
11973936--11974018	41	2.0	41	83	4	105	26	8	22	42	1.82
11974675--11974713	19	2.0	20	90	5	62	33	0	5	61	1.18
11974856--11974904	19	2.6	19	80	0	62	51	4	6	38	1.46
11974910--11974976	30	2.2	31	84	12	86	56	2	0	40	1.14
11975655--11975689	18	2.0	18	88	5	54	34	0	0	65	0.93
11978942--11978979	3	12.7	3	100	0	76	65	0	0	34	0.93
11988289--11988330	22	1.9	22	90	0	66	52	2	0	45	1.13
11988728--11988758	12	2.5	12	94	5	53	3	12	0	83	0.75
11989063--11989109	16	2.9	16	90	3	76	21	6	0	72	1.07
11989242--11989304	21	2.9	21	73	7	54	39	3	0	57	1.15
11989758--11989816	26	2.3	26	84	0	73	45	11	1	40	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11989902--11989997	48	2.0	48	87	4	140	41	15	2	40	1.59
11993111--11993144	2	17.0	2	100	0	68	50	0	0	50	1.00
11999694--11999723	16	1.9	15	93	6	51	30	3	6	60	1.39
11999758--11999932	21	8.6	21	73	12	105	34	3	8	54	1.47
12000187--12000400	22	9.7	22	73	4	146	40	7	6	45	1.57
12000414--12000473	22	2.6	23	78	10	68	38	10	6	45	1.64
12000733--12000798	22	3.2	19	71	24	53	37	7	7	46	1.61
12001215--12001299	22	3.9	22	83	7	111	40	3	8	48	1.50
12001202--12001288	44	2.0	44	84	8	115	42	4	5	47	1.48
12001219--12001310	44	2.1	44	82	8	107	36	4	9	48	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84