genome.fa.s157.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  21  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4245909--4245952	18	2.5	17	79	13	54	11	0	6	81	0.86
4245910--4245950	16	2.5	16	85	14	57	12	0	4	82	0.81
4247679--4247709	15	2.1	15	93	0	53	64	0	0	35	0.94
4247862--4247914	14	3.6	14	80	9	52	54	30	0	15	1.41
4260496--4260871	104	3.6	104	79	8	379	19	22	9	48	1.78
4260775--4260911	70	2.0	69	85	7	188	20	24	8	45	1.79
4260640--4261015	174	2.2	174	81	5	433	19	23	9	47	1.78
4260603--4261111	278	1.8	278	84	5	697	19	22	9	47	1.78
4260828--4261461	104	6.1	105	78	2	467	20	21	10	47	1.80
4261083--4261461	209	1.8	209	80	3	467	20	21	11	46	1.81
4261499--4261594	38	2.6	37	83	1	129	14	20	16	47	1.82
4261850--4261884	16	2.1	17	89	5	54	62	0	0	37	0.95
4263335--4263378	21	2.1	21	87	8	63	52	25	2	20	1.58
4264500--4264699	93	2.2	93	86	2	278	17	14	21	48	1.81
4267324--4267381	14	4.1	13	77	18	62	82	0	17	0	0.66
4267321--4267377	30	1.9	30	86	10	82	80	0	19	0	0.71
4267324--4267408	41	2.1	41	84	4	109	77	0	21	1	0.83
4267328--4267409	27	2.9	28	81	13	80	75	0	21	2	0.92
4267433--4267471	10	3.8	10	90	6	60	79	5	15	0	0.90
4267433--4267480	10	4.2	11	80	15	53	79	6	14	0	0.92
4267433--4267471	21	1.9	20	89	5	60	79	5	15	0	0.90
4267329--4267550	102	2.2	103	82	5	281	67	1	24	5	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4274426--4274562	68	2.0	68	92	0	229	37	16	16	29	1.91
4278462--4278531	16	4.4	16	76	7	79	15	1	31	51	1.53
4278446--4278534	32	2.7	32	82	8	108	16	2	32	48	1.59
4280096--4280127	13	2.5	13	89	0	55	37	0	0	62	0.95
4280446--4280565	34	3.5	34	90	3	170	47	15	20	16	1.83
4280504--4280919	174	2.4	174	87	3	617	46	13	19	20	1.83
4280644--4281139	276	1.8	273	87	5	750	45	12	18	23	1.83
4280821--4281021	102	2.0	102	86	2	278	48	10	16	23	1.78
4281125--4281222	36	2.7	36	87	3	144	48	8	22	20	1.75
4281125--4281331	36	5.7	36	70	12	129	45	10	23	20	1.82
4281479--4281521	22	2.0	22	90	9	70	32	13	20	32	1.92
4281449--4281829	110	3.5	108	82	3	440	39	17	20	22	1.93
4281738--4282003	86	3.0	87	80	9	308	39	17	20	22	1.93
4281738--4282003	88	3.0	86	82	7	295	39	17	20	22	1.93
4282192--4282246	22	2.5	23	79	8	69	27	16	23	32	1.96
4282379--4282485	41	2.6	41	82	5	128	33	15	15	34	1.90
4284792--4284823	14	2.4	14	94	5	57	0	6	3	90	0.53
4289496--4289602	17	6.6	17	70	11	73	19	2	31	45	1.65
4289472--4289566	48	2.0	48	83	6	122	23	2	28	46	1.64
4289498--4289602	48	2.2	49	84	1	131	19	2	31	46	1.64
4289496--4289606	16	6.9	16	70	11	84	18	2	30	47	1.63
4289810--4289840	16	1.9	16	93	0	53	38	0	6	54	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4289999--4290053	15	3.7	14	76	23	51	76	7	0	16	1.00
4290565--4290604	8	5.0	8	87	0	53	0	12	5	82	0.82
4295132--4295168	19	1.9	19	100	0	74	54	16	16	13	1.72
4299192--4299241	22	2.3	21	82	6	55	46	4	2	48	1.32
4308984--4309051	23	3.0	23	100	0	136	52	13	13	20	1.73
4310109--4310175	26	2.6	25	81	4	89	50	0	1	47	1.10
4310145--4310182	14	2.5	15	83	8	51	47	0	2	50	1.15
4310269--4310439	23	7.5	22	73	17	111	42	1	1	53	1.21
4310268--4310447	18	11.0	17	69	21	100	43	1	1	53	1.20
4310269--4310456	49	3.9	48	77	12	161	44	1	1	52	1.20
4310269--4310439	46	3.7	48	76	14	153	42	1	1	53	1.21
4310400--4310454	18	2.8	19	75	10	58	47	0	0	52	1.00
4314700--4314732	2	17.0	2	87	6	50	45	0	0	54	0.99
4317982--4318082	48	2.1	48	96	0	184	32	14	15	36	1.89
4319468--4319516	22	2.2	22	92	7	82	51	0	0	48	1.00
4319507--4319566	32	1.9	32	87	12	90	60	0	0	40	0.97
4319506--4319558	16	3.5	15	80	10	63	60	0	0	39	0.97
4324090--4324168	36	2.2	35	84	2	104	32	11	17	37	1.86
4328171--4329101	331	2.8	328	85	4	1244	37	13	14	35	1.85
4333088--4333171	30	2.8	30	92	0	132	9	22	36	30	1.86
4334219--4335033	46	17.8	46	86	2	1110	34	23	15	27	1.94
4334219--4335035	91	9.0	91	90	1	1183	34	23	15	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4334219--4335021	137	5.9	138	86	2	1111	33	23	15	27	1.95
4337912--4338181	55	5.0	55	75	10	261	42	18	14	25	1.87
4337986--4338050	30	2.2	30	100	0	130	40	20	12	27	1.88
4338038--4338078	20	2.0	20	100	0	82	51	19	0	29	1.47
4337912--4338162	105	2.3	104	71	14	249	42	18	14	25	1.88
4352982--4353042	22	2.8	22	78	14	65	14	57	14	13	1.66
4354395--4354429	16	2.1	17	89	5	54	51	28	0	20	1.47
4354400--4354445	14	3.1	14	84	6	56	47	32	0	19	1.50
4354440--4354500	29	2.1	29	82	11	72	52	32	1	13	1.50
4354440--4354500	16	4.2	14	80	12	61	52	32	1	13	1.50
4362454--4362733	33	8.6	33	74	14	217	29	20	16	34	1.94
4362455--4362800	65	5.3	64	76	11	283	30	19	15	34	1.93
4362454--4362801	98	3.6	98	83	3	393	30	20	15	33	1.94
4363323--4363626	121	2.5	119	92	2	511	33	15	15	36	1.88
4363614--4363678	23	3.0	21	82	10	76	26	23	21	29	1.99
4363744--4363810	22	3.0	22	85	8	82	23	22	23	29	1.99
4363617--4363911	131	2.2	132	88	6	440	24	20	19	35	1.95
4364112--4364199	12	8.2	11	75	13	53	72	0	0	27	0.85
4364111--4364198	15	6.0	15	73	15	69	71	0	0	28	0.86
4364166--4364199	7	4.9	7	86	13	52	88	0	0	11	0.52
4364165--4364200	16	2.4	16	90	9	58	88	0	0	11	0.50
4365651--4365692	21	2.0	21	86	9	59	50	33	0	16	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4365674--4365727	14	3.7	14	78	9	63	53	31	0	14	1.41
4365629--4365731	51	2.0	51	83	10	131	49	31	0	19	1.49
4374290--4374315	2	13.0	2	100	0	52	50	0	0	50	1.00
4378639--4378680	8	5.1	8	85	5	57	80	16	2	0	0.81
4378639--4378681	17	2.6	17	88	3	61	79	18	2	0	0.85
4378631--4378680	25	2.0	26	92	4	84	80	18	2	0	0.82
4378720--4378759	12	3.2	12	85	3	53	27	50	12	10	1.72
4381672--4381696	2	12.5	2	100	0	50	48	0	0	52	1.00
4383104--4384144	370	2.8	369	86	2	1464	27	23	30	18	1.98
4384470--4384562	47	2.0	47	80	4	107	39	9	11	38	1.75
4384772--4384877	42	2.5	42	92	0	167	28	12	23	35	1.91
4391304--4391346	21	2.1	21	82	4	52	27	4	0	67	1.10
4399221--4399250	2	15.0	2	100	0	60	50	0	0	50	1.00
4409929--4409971	16	2.6	16	77	3	50	48	0	2	48	1.14
4420639--4420677	2	19.5	2	100	0	78	48	0	0	51	1.00
4421423--4421459	18	2.2	18	85	9	51	35	10	16	37	1.83
4421838--4421866	2	14.5	2	100	0	58	51	0	0	48	1.00
4422056--4422105	23	2.3	21	78	15	57	38	6	6	50	1.52
4422063--4422107	23	2.0	23	95	0	81	33	6	6	53	1.53
4422305--4422332	2	14.0	2	100	0	56	50	0	0	50	1.00
4426462--4426487	2	13.0	2	100	0	52	50	0	50	0	1.00
4447310--4447349	21	1.9	21	84	0	53	30	2	0	67	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4454585--4454612	2	14.0	2	100	0	56	50	0	0	50	1.00
4462459--4462510	3	17.3	3	91	0	86	34	0	1	63	1.06
4465768--4465808	17	2.4	18	80	12	50	34	4	2	58	1.32
4468524--4468566	18	2.2	18	84	12	50	44	0	0	55	0.99
4478224--4478252	3	9.7	3	100	0	58	34	0	0	65	0.93
4479795--4479829	17	2.1	17	88	0	52	17	31	11	40	1.85
4486750--4486785	15	2.4	15	95	0	63	38	19	19	22	1.93
4489409--4489510	26	4.0	25	75	15	84	48	0	0	50	1.14
4489454--4489510	25	2.1	28	87	12	84	50	0	1	47	1.11
4489409--4489510	25	4.0	26	77	15	81	48	0	0	50	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84