genome.fa.s157.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  57  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12939486--12939553	35	1.9	35	100	0	136	41	19	10	29	1.84
12939436--12939602	83	2.0	84	92	1	282	38	21	11	28	1.89
12939980--12940029	22	2.3	22	82	3	57	26	18	4	52	1.63
12953595--12953649	26	2.1	26	83	6	67	5	7	9	78	1.10
12953618--12953675	17	3.2	20	74	23	72	8	5	8	77	1.11
12953642--12953666	13	1.9	13	100	0	50	8	4	8	80	1.03
12954961--12955018	19	3.1	19	74	0	62	15	13	29	41	1.86
12954938--12955040	38	2.7	38	85	4	120	16	9	28	45	1.79
12957097--12957227	44	3.2	44	61	24	111	6	39	12	40	1.71
12957074--12957255	80	2.3	80	96	2	330	6	39	11	42	1.67
12957954--12958031	6	12.8	6	71	15	54	3	2	12	80	0.95
12957947--12958031	33	2.6	32	87	7	116	3	2	12	81	0.92
12957947--12958061	48	2.5	46	81	5	133	4	3	10	81	0.94
12958116--12958196	31	2.6	31	84	0	99	30	16	33	19	1.94
12958231--12958545	32	9.8	33	71	8	157	32	16	16	35	1.91
12958244--12958415	33	5.3	32	72	6	123	31	16	17	33	1.93
12958244--12958465	65	3.4	64	75	4	178	32	16	18	33	1.93
12958456--12958565	32	3.4	32	77	8	107	32	16	10	40	1.83
12958551--12958591	21	2.0	21	100	0	82	19	9	26	43	1.82
12958845--12958903	22	2.7	22	83	0	73	22	20	22	35	1.96
12958865--12958914	22	2.3	22	89	0	73	26	16	22	36	1.94
12959924--12959984	19	3.1	20	81	13	74	8	16	0	75	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12959936--12959997	26	2.5	24	78	17	56	8	16	0	75	1.02
12959934--12959992	24	2.5	22	80	20	66	8	15	0	76	1.01
12959923--12960006	9	9.5	8	73	15	51	7	15	0	77	0.97
12961169--12961253	3	29.0	3	80	9	59	32	7	3	56	1.43
12962254--12962354	48	2.1	47	84	15	127	64	6	1	26	1.30
12967170--12967550	208	1.8	208	79	5	439	19	22	12	45	1.83
12967378--12968040	120	5.6	118	80	5	611	19	23	13	43	1.86
12967379--12968053	235	2.8	237	78	5	704	19	22	13	44	1.86
12968239--12968351	3	38.0	3	88	5	149	32	5	0	61	1.25
12969222--12969259	13	3.0	13	84	3	51	10	0	2	86	0.66
12969366--12969444	36	2.2	35	82	17	99	59	8	2	29	1.41
12969437--12969489	25	2.0	27	82	10	65	71	9	0	18	1.12
12970381--12970409	13	2.2	13	100	0	58	6	6	0	86	0.72
12970390--12970436	14	3.5	13	83	13	51	4	17	0	78	0.90
12973807--12973862	17	3.5	15	75	20	51	67	1	1	28	1.10
12974635--12974672	20	2.0	20	89	5	60	39	2	7	50	1.46
12974505--12974792	151	1.9	150	83	7	377	36	7	6	49	1.58
12977951--12977994	8	5.2	8	80	20	54	27	0	0	72	0.85
12977951--12977993	9	5.0	9	80	8	54	25	0	0	74	0.82
12977951--12977994	17	2.6	18	85	10	65	27	0	0	72	0.85
12978182--12978216	12	2.9	12	95	0	61	11	0	28	60	1.32
12978155--12978203	19	2.6	18	74	6	53	18	4	26	51	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12978155--12978257	50	2.1	49	85	1	134	18	4	24	52	1.65
12978232--12978302	12	5.8	12	76	11	56	19	8	18	53	1.69
12978232--12978283	26	2.0	26	85	3	70	21	5	15	57	1.58
12981273--12981437	50	3.2	49	71	19	145	27	9	7	56	1.57
12981265--12981437	58	3.1	56	73	16	157	27	8	7	56	1.56
12981764--12981805	7	6.0	7	81	10	50	21	0	0	78	0.75
12982024--12982058	18	1.9	18	88	0	52	74	8	2	14	1.17
12982955--12983069	38	2.8	40	82	8	128	40	21	10	26	1.86
12982958--12983205	42	6.0	42	76	6	202	42	18	10	27	1.84
12983622--12983661	21	1.9	21	85	10	55	35	17	10	37	1.83
12983643--12983774	58	2.3	58	92	3	214	31	16	13	37	1.88
12984959--12985031	22	3.3	21	79	9	74	8	10	0	80	0.89
12984961--12985031	15	5.0	14	79	8	65	8	9	0	81	0.87
12989020--12989115	44	2.2	45	84	5	124	25	11	6	57	1.57
12990443--12990495	9	5.7	9	81	14	54	9	7	1	81	0.96
12990435--12990495	31	2.0	29	90	6	95	11	9	1	77	1.07
12993719--12993759	21	1.9	22	85	5	57	63	0	0	36	0.95
12994732--12994774	8	5.2	8	86	13	61	23	2	0	74	0.93
12994732--12994773	18	2.3	18	87	0	66	23	2	0	73	0.94
12995942--12995970	12	2.3	13	94	5	51	24	0	3	72	1.00
12996534--12996590	4	14.2	4	96	0	51	36	0	12	50	1.40
12996536--12996590	8	6.9	8	93	0	65	36	0	12	50	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12996536--12996590	12	4.6	12	90	0	65	36	0	12	50	1.41
13003912--13003946	6	5.8	6	96	0	52	85	0	5	8	0.73
13004844--13004890	2	23.5	2	100	0	94	0	48	0	51	1.00
13006914--13006979	12	5.2	12	85	8	87	22	7	15	54	1.66
13006914--13006979	26	2.6	25	86	9	89	22	7	15	54	1.66
13009745--13009785	2	20.5	2	94	0	73	51	0	0	48	1.00
13017095--13017128	16	2.1	16	88	0	50	29	0	0	70	0.87
13021887--13021957	27	2.7	26	80	10	72	67	1	5	25	1.20
13022428--13022478	17	2.8	19	85	5	70	43	1	3	50	1.31
13022479--13022528	25	2.0	25	88	7	75	50	2	0	48	1.12
13022626--13022660	2	18.5	2	88	11	56	48	0	0	51	1.00
13024497--13024557	28	2.2	28	85	2	79	52	4	0	42	1.23
13033844--13033882	15	2.6	15	91	0	60	69	0	0	30	0.89
13033878--13033939	26	2.6	23	80	14	79	53	3	8	35	1.47
13040024--13040050	14	1.9	14	100	0	54	29	0	33	37	1.58
13044722--13044771	24	2.1	24	88	0	73	68	6	2	24	1.23
13045794--13045887	32	3.1	30	73	11	84	54	0	1	44	1.07
13048650--13048696	15	3.2	15	75	6	51	23	4	2	70	1.16
13050971--13050995	13	1.9	13	100	0	50	96	0	4	0	0.24
13053801--13053833	13	2.5	14	85	14	52	9	6	3	81	0.95
13055332--13055391	21	2.8	22	92	7	97	51	0	8	40	1.32
13055335--13055391	10	5.5	11	77	6	57	49	0	8	42	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13061505--13061567	18	3.5	17	77	18	58	63	1	1	33	1.13
13061533--13061592	9	6.6	9	73	17	52	65	0	3	31	1.09
13061456--13061546	42	2.2	42	80	7	105	62	3	3	30	1.27
13061511--13061563	19	3.1	16	84	13	61	66	1	1	30	1.13
13061511--13061586	37	2.1	35	85	7	98	61	1	2	34	1.18
13061723--13061764	20	2.1	20	86	0	57	57	7	0	35	1.26
13061844--13061882	19	2.1	19	90	0	60	61	5	2	30	1.31
13061848--13061890	19	2.3	19	79	0	50	72	4	2	20	1.14
13062409--13062464	20	2.7	21	72	5	51	32	3	5	58	1.37
13062621--13062729	53	2.1	53	98	0	209	50	9	10	30	1.67
13071487--13071528	12	3.2	13	83	10	50	64	4	0	30	1.14
13071633--13071722	42	2.2	42	79	13	98	40	2	0	57	1.11
13072109--13072190	15	5.6	15	73	15	73	31	1	4	62	1.24
13072109--13072179	29	2.4	29	88	0	97	33	1	4	60	1.25
13072140--13072199	19	3.2	19	78	4	50	30	3	5	61	1.33
13072278--13072328	17	2.9	18	77	5	52	47	1	0	50	1.12
13076798--13076841	19	2.3	18	85	11	61	52	2	6	38	1.41
13076808--13076848	19	2.2	19	100	0	82	48	4	4	41	1.46
13077392--13077434	23	1.9	23	85	4	61	37	11	23	27	1.89
13077763--13077867	5	20.2	5	72	18	56	38	5	1	54	1.35
13077766--13077802	17	2.2	17	90	0	56	45	2	0	51	1.15
13077873--13077897	11	2.3	11	100	0	50	0	8	0	92	0.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13078691--13078740	17	2.9	17	85	5	57	14	0	6	80	0.90
13078905--13078946	18	2.2	19	87	8	59	59	9	0	30	1.29
13079692--13080025	184	1.8	183	80	7	399	34	11	10	42	1.77
13080055--13080082	12	2.3	12	100	0	56	17	0	0	82	0.68
13080950--13080998	23	2.1	23	88	0	71	24	14	14	46	1.81
13081325--13081570	89	2.8	89	85	3	309	42	15	11	30	1.82
13081331--13081570	44	5.4	44	86	2	293	42	15	11	30	1.82
13081552--13082107	48	11.5	49	80	6	571	38	19	10	31	1.86
13081545--13082100	193	2.9	192	84	3	695	39	19	10	30	1.86
13082894--13082934	8	5.1	8	81	0	55	17	2	0	80	0.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84