genome.fa.s3.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  11  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3188940--3189340	47	8.6	46	77	9	368	27	15	30	26	1.96
3188942--3189266	94	3.5	93	83	2	420	27	15	30	26	1.96
3188958--3189268	141	2.2	140	86	1	435	27	15	30	26	1.96
3189985--3190094	31	3.5	31	88	2	114	28	16	19	36	1.93
3191518--3191789	145	1.9	145	83	3	359	29	22	18	29	1.97
3191518--3191842	145	2.2	144	80	6	354	29	21	16	32	1.95
3193974--3194091	62	1.9	62	85	0	164	28	32	16	22	1.96
3194021--3194357	87	3.9	86	85	1	433	29	30	17	22	1.96
3197857--3198027	31	5.5	31	90	1	220	35	21	14	28	1.93
3200581--3200605	2	12.5	2	100	0	50	48	0	0	52	1.00
3201938--3201988	2	26.5	2	88	7	79	49	0	0	50	1.00
3202906--3202991	7	11.3	7	72	18	57	74	0	3	22	0.97
3202895--3202989	32	2.9	32	77	13	86	73	0	3	23	0.97
3202907--3202994	29	3.4	27	76	13	78	75	0	3	21	0.95
3206144--3206188	18	2.6	18	82	3	56	15	6	0	77	0.96
3206154--3206195	22	2.0	21	86	13	59	16	2	2	78	0.96
3206142--3206202	25	2.4	25	80	0	59	14	4	3	77	1.07
3206390--3206419	15	1.9	16	93	6	53	0	16	3	80	0.85
3206382--3206430	25	2.0	25	92	4	82	0	16	4	79	0.88
3208855--3208940	42	2.1	42	86	2	120	33	15	12	38	1.85
3211648--3211684	15	2.5	15	90	0	56	40	21	2	35	1.68
3214591--3214643	26	2.0	27	85	10	74	30	0	0	69	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3224241--3224344	38	2.7	39	83	7	140	23	40	16	20	1.91
3225219--3225258	21	2.0	21	90	9	66	32	17	25	25	1.97
3226838--3226908	35	2.0	35	83	8	90	32	25	15	26	1.95
3231399--3231484	43	2.0	43	90	4	138	24	16	25	33	1.95
3231411--3231509	43	2.3	43	84	6	121	22	18	24	35	1.96
3233366--3233674	153	2.0	153	86	3	435	49	12	12	25	1.75
3237965--3238070	32	3.2	32	70	17	99	26	13	26	33	1.93
3237925--3238097	67	2.6	67	80	7	206	28	13	24	33	1.94
3244715--3244903	73	2.6	71	79	11	197	39	17	21	21	1.93
3245302--3245412	35	3.3	35	71	11	95	29	13	25	31	1.94
3245319--3245432	32	3.5	32	78	11	140	22	14	29	33	1.93
3245318--3245456	67	2.1	67	91	5	228	27	13	27	31	1.94
3262391--3262487	48	2.0	48	100	0	194	32	12	26	27	1.92
3268016--3268136	60	2.0	59	80	6	136	26	16	31	25	1.96
3275431--3275517	31	2.8	31	70	11	81	39	14	20	25	1.91
3275407--3275711	61	5.0	60	74	8	231	36	20	19	24	1.95
3275407--3275700	122	2.4	122	79	5	299	36	20	18	23	1.95
3275484--3275703	122	1.8	122	85	5	311	36	21	18	23	1.95
3275619--3275714	31	3.1	30	71	12	79	36	17	18	27	1.94
3275717--3277980	60	37.9	60	76	7	735	36	11	15	36	1.83
3275755--3278549	121	23.5	120	77	6	1655	36	11	15	36	1.84
3275799--3278549	58	46.4	58	76	9	1492	37	11	15	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3278657--3278692	18	2.0	18	89	10	56	22	5	0	72	1.05
3281171--3281211	2	20.5	2	100	0	82	51	0	0	48	1.00
3281578--3281672	35	2.7	35	82	8	111	34	28	12	24	1.92
3281605--3281709	35	3.0	34	83	5	113	36	25	15	22	1.93
3284091--3284134	16	2.7	16	83	16	63	68	0	4	27	1.09
3290735--3291860	564	2.0	565	99	0	2204	27	18	18	35	1.94
3291838--3291891	2	28.0	2	92	7	94	0	51	0	48	1.00
3291891--3291919	2	14.5	2	100	0	58	48	0	0	51	1.00
3304546--3304593	20	2.3	20	96	3	87	37	25	14	22	1.92
3307665--3307699	17	2.1	17	94	0	61	54	11	17	17	1.71
3309741--3309773	15	2.1	16	88	5	50	60	6	0	33	1.21
3326848--3327008	83	1.9	84	82	6	202	43	8	6	41	1.61
3330874--3330904	16	1.9	16	93	0	53	19	9	19	51	1.74
3333024--3333251	54	4.2	54	78	0	186	30	22	28	18	1.97
3333018--3333251	27	8.7	27	68	4	114	30	22	28	18	1.97
3333020--3333252	108	2.2	108	80	1	252	30	22	27	18	1.97
3333278--3333330	28	1.9	27	84	3	70	37	30	24	7	1.83
3334378--3334461	25	3.3	25	66	12	71	20	21	17	40	1.91
3334349--3334554	52	4.0	52	87	1	270	20	23	15	40	1.90
3334382--3334582	104	1.9	104	81	4	244	23	23	15	36	1.93
3335863--3335909	20	2.3	20	88	0	67	21	12	23	42	1.87
3338453--3338484	15	2.1	15	94	0	55	84	0	15	0	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3338528--3338571	20	2.2	20	87	4	61	38	6	25	29	1.81
3338842--3338886	2	24.5	2	82	17	62	46	0	0	53	1.00
3338840--3338886	13	3.7	13	94	2	78	46	0	0	53	1.00
3338840--3338886	11	4.0	11	84	13	58	46	0	0	53	1.00
3339423--3339598	27	6.5	27	76	4	122	32	22	26	18	1.97
3339618--3339717	27	3.7	27	78	2	94	29	25	32	14	1.94
3339703--3339762	27	2.2	28	78	3	68	33	26	26	13	1.93
3339710--3339770	28	2.2	27	79	2	68	36	26	26	11	1.90
3352790--3353182	208	1.9	208	88	2	601	40	7	16	35	1.76
3355381--3355824	221	2.0	224	82	6	555	22	13	15	47	1.81
3365384--3365649	135	2.0	135	91	0	433	43	10	9	36	1.71
3371805--3371851	25	1.9	24	82	4	58	23	2	4	70	1.16
3372172--3372215	24	1.9	23	90	9	72	43	4	18	34	1.70
3377775--3377836	30	2.1	30	100	0	124	25	16	22	35	1.94
3378013--3378117	21	5.0	22	72	18	57	53	1	2	41	1.26
3378049--3378141	26	3.4	29	77	11	90	51	1	2	45	1.20
3382691--3382754	24	2.6	25	72	16	62	34	12	12	40	1.81
3383849--3383907	31	1.9	31	86	3	84	33	11	6	47	1.67
3384951--3385012	30	2.1	30	81	6	72	30	8	8	53	1.59
3388310--3388346	19	1.9	19	94	0	65	45	27	0	27	1.54
3399314--3399488	87	2.0	87	96	2	325	43	6	20	29	1.77
3400691--3400874	66	2.8	66	82	4	235	26	14	25	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3419331--3419582	66	3.8	66	87	2	319	25	13	26	33	1.94
3419417--3419524	34	3.2	34	70	15	116	32	10	25	31	1.89
3421283--3421328	23	2.0	24	82	4	58	6	28	4	60	1.40
3445049--3445115	22	3.0	22	88	2	98	25	7	25	41	1.81
3445155--3445194	5	8.0	5	85	0	53	42	0	20	37	1.52
3449282--3449310	2	14.5	2	100	0	58	51	0	0	48	1.00
3449526--3449618	34	2.7	33	91	6	150	19	12	30	37	1.89
3449710--3449796	34	2.5	35	81	12	117	37	16	21	24	1.93
3449931--3449989	5	11.8	5	89	7	93	79	1	18	0	0.81
3450024--3450080	25	2.3	24	82	14	71	49	7	19	24	1.73
3451073--3451823	372	2.0	373	88	4	1100	30	17	17	33	1.94
3454237--3454284	1	48.0	1	87	0	69	2	0	4	93	0.39
3454732--3454757	6	4.3	6	100	0	52	15	0	0	84	0.62
3456159--3456203	23	2.0	21	83	12	54	11	6	8	73	1.25
3456937--3457194	94	2.7	94	87	2	358	26	17	32	23	1.97
3457182--3457257	23	3.3	23	70	9	73	26	17	27	28	1.97
3456921--3457212	94	3.1	93	82	2	334	26	17	31	24	1.97
3456936--3457194	47	5.5	47	82	4	308	26	17	32	23	1.97
3457183--3457335	47	3.4	47	81	8	172	27	15	27	30	1.96
3457183--3457308	43	2.8	45	85	5	150	26	15	28	29	1.96
3457799--3457969	31	5.5	31	88	2	218	24	20	20	34	1.96
3457799--3457963	62	2.7	62	89	0	240	24	20	21	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3458684--3458982	31	9.6	31	88	0	400	23	18	19	38	1.93
3460527--3460599	16	4.6	16	77	13	62	35	6	4	53	1.47
3460532--3460658	16	8.1	16	68	15	59	37	8	3	50	1.52
3460524--3460656	46	2.7	47	80	10	135	35	8	4	51	1.52
3460610--3460674	34	1.9	33	84	12	87	35	13	4	46	1.64
3461679--3461940	31	8.5	31	87	0	344	24	18	20	36	1.95
3466209--3466451	31	7.8	31	82	5	285	41	19	13	24	1.88
3478353--3478859	254	2.0	254	89	2	768	35	21	13	30	1.91
3479026--3479104	21	3.8	20	73	9	77	48	3	1	46	1.28
3484785--3484965	47	3.9	47	87	2	249	45	11	6	37	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91