genome.fa.s3.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  43  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14796030--14796065	19	1.9	18	88	5	54	47	0	0	52	1.00
14796030--14796067	17	2.2	18	90	4	60	44	0	0	55	0.99
14796083--14796125	15	2.6	17	79	20	56	53	0	0	46	1.00
14799982--14800033	26	2.0	26	88	0	77	32	15	9	42	1.79
14807369--14807393	12	2.1	12	100	0	50	40	8	44	8	1.63
14808900--14808943	16	2.8	16	77	16	56	65	9	0	25	1.21
14811845--14811882	18	2.1	19	85	5	51	15	28	2	52	1.56
14815584--14815682	38	2.5	40	85	3	130	24	15	37	23	1.93
14819897--14820152	35	7.3	35	83	3	293	44	13	7	34	1.72
14819897--14820145	107	2.4	104	84	4	331	43	13	7	34	1.73
14819876--14820152	142	2.0	139	87	3	403	42	14	7	35	1.73
14825994--14826284	42	6.9	42	88	0	402	23	21	30	23	1.99
14826293--14826354	26	2.4	26	97	0	115	22	3	41	32	1.70
14838442--14838479	19	2.0	19	100	0	76	42	31	0	26	1.56
14840312--14840636	180	1.8	180	86	2	474	33	14	13	38	1.86
14846313--14846468	42	3.7	42	85	1	188	20	19	33	25	1.96
14846498--14846536	2	19.0	2	86	5	51	43	0	5	51	1.24
14846499--14846535	19	1.9	19	88	0	56	43	0	5	51	1.24
14850836--14850864	14	2.0	15	93	6	51	48	10	20	20	1.79
14852509--14852545	18	2.0	20	89	10	60	70	0	29	0	0.88
14853611--14853698	42	2.1	42	87	4	124	21	21	32	23	1.98
14853611--14853733	42	2.9	42	76	9	117	21	20	33	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14855300--14855363	19	3.4	19	70	8	67	20	40	17	21	1.91
14872317--14872571	35	7.3	35	80	8	254	43	13	5	36	1.68
14872317--14872545	71	3.2	71	83	4	302	43	13	6	36	1.69
14872317--14872568	107	2.4	105	83	3	330	43	13	5	37	1.68
14872466--14872525	18	3.4	17	68	13	50	40	11	8	40	1.72
14882175--14882305	43	3.1	43	82	7	144	23	19	37	19	1.94
14890313--14890355	22	1.9	23	90	4	70	16	37	6	39	1.75
14891139--14891312	42	4.1	42	88	5	262	22	18	34	24	1.96
14891143--14891305	83	2.0	84	91	3	267	22	19	34	23	1.97
14891899--14891945	19	2.5	19	75	0	58	29	34	21	14	1.93
14897247--14897346	43	2.4	42	84	3	130	25	34	18	23	1.96
14904420--14904444	13	1.9	13	100	0	50	44	0	8	48	1.32
14910455--14910585	43	3.1	43	77	10	146	24	34	17	23	1.96
14911859--14911902	2	22.0	2	95	0	79	47	0	0	52	1.00
14912056--14912115	2	30.0	2	93	0	102	50	0	0	50	1.00
14912853--14912897	23	2.0	23	90	0	72	42	6	35	15	1.73
14913521--14913596	37	2.1	37	92	0	125	42	28	7	21	1.81
14915164--14915323	42	3.8	42	84	4	187	26	17	31	24	1.97
14915188--14915323	43	3.2	43	84	7	179	26	16	33	22	1.96
14917236--14917338	38	2.6	39	81	6	120	19	15	41	23	1.89
14946877--14946946	35	2.0	34	83	2	86	30	27	14	28	1.95
14946904--14947011	35	3.2	35	67	10	98	35	26	14	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14947402--14947601	73	2.8	73	77	9	203	19	20	18	41	1.91
14948127--14948202	37	2.1	37	97	0	143	42	27	9	21	1.83
14953959--14954082	42	3.0	42	81	7	153	22	28	20	29	1.98
14954161--14954362	104	2.0	103	94	3	352	34	17	12	34	1.88
14965800--14965869	35	2.0	35	100	0	140	34	25	8	31	1.86
14974545--14974786	36	6.7	36	81	7	156	20	13	38	27	1.91
14974619--14974786	36	4.7	36	85	6	209	22	13	35	28	1.92
14974645--14974786	69	2.1	69	86	5	198	23	13	33	28	1.93
14977561--14977778	106	2.1	106	94	0	382	33	10	21	34	1.88
14977910--14978045	43	3.2	43	86	2	175	25	16	35	23	1.95
14982541--14982592	25	2.0	25	85	3	68	15	0	15	69	1.20
14985354--14985418	30	2.2	30	91	0	103	44	13	20	21	1.86
14988004--14988137	39	3.4	39	79	10	157	31	6	16	45	1.73
14987993--14988137	79	1.8	78	88	7	222	32	6	16	44	1.74
14991176--14991228	28	1.9	27	88	3	79	28	22	18	30	1.98
14991273--14991318	20	2.3	20	88	7	67	45	17	4	32	1.68
15010271--15010328	2	29.0	2	100	0	116	50	0	0	50	1.00
15010779--15010941	73	2.2	72	77	10	172	36	16	23	23	1.94
15017225--15017254	2	15.0	2	92	0	51	46	0	3	50	1.18
15017300--15017421	42	2.9	42	88	0	181	24	32	19	22	1.97
15020422--15020456	10	3.4	10	88	4	52	65	0	5	28	1.15
15027663--15027810	75	2.0	73	96	4	262	35	8	20	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15027844--15027955	42	2.7	42	84	2	118	20	17	36	25	1.94
15033143--15033182	20	2.0	20	85	0	53	17	40	7	35	1.78
15033151--15033191	20	2.1	20	86	4	57	14	34	7	43	1.73
15037366--15037417	22	2.3	23	80	3	61	63	0	36	0	0.95
15037373--15037441	26	2.7	26	80	8	70	60	0	39	0	0.97
15041618--15041788	63	2.7	63	86	1	229	22	16	34	26	1.95
15047113--15047244	43	3.1	44	81	4	162	22	18	37	21	1.94
15047620--15047709	40	2.3	40	84	1	110	23	15	25	35	1.94
15047855--15047890	19	1.9	18	94	5	63	27	22	25	25	2.00
15050207--15050340	43	3.1	43	84	3	173	26	14	32	26	1.95
15050653--15050743	39	2.3	39	86	0	119	23	18	19	38	1.93
15053567--15053685	43	2.8	43	89	2	168	19	37	21	21	1.94
15063918--15063950	17	1.9	17	88	11	50	48	0	24	27	1.51
15066376--15066427	21	2.5	21	81	6	61	42	17	15	25	1.88
15070119--15070219	52	1.9	52	95	0	184	22	14	32	29	1.94
15070180--15070310	35	3.6	36	82	9	124	21	12	35	31	1.90
15071131--15071171	21	1.9	22	90	5	66	51	7	24	17	1.70
15071131--15071175	20	2.2	21	84	11	58	55	6	22	15	1.63
15071129--15071176	21	2.3	20	79	10	60	56	6	22	14	1.61
15074372--15074413	22	1.9	22	90	9	68	69	2	7	21	1.25
15074574--15074614	2	21.0	2	95	5	75	48	0	0	51	1.00
15083439--15083580	42	3.4	42	83	1	187	24	30	21	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15086114--15086138	13	1.9	13	100	0	50	28	0	32	40	1.57
15089920--15090019	36	2.8	36	83	3	103	21	18	27	34	1.96
15092629--15092780	35	4.1	35	80	14	187	23	9	38	27	1.86
15092662--15092753	44	2.1	44	91	0	148	23	7	39	29	1.83
15092629--15092780	79	1.9	79	93	0	259	23	9	38	27	1.86
15097858--15097999	29	4.9	28	83	6	167	38	11	12	37	1.79
15097858--15098032	59	3.0	58	83	5	208	38	10	12	38	1.78
15097858--15098009	28	5.3	28	81	10	155	39	10	11	38	1.77
15099358--15099442	31	2.7	31	80	8	93	21	29	23	25	1.99
15099564--15099600	17	2.2	17	90	4	58	51	0	0	48	1.00
15099861--15099899	2	20.5	2	89	10	64	48	0	0	51	1.00
15105451--15105488	20	1.9	20	94	0	67	26	5	23	44	1.74
15109158--15109190	17	1.9	17	88	11	50	42	15	3	39	1.62
15109343--15109467	28	4.3	30	74	12	75	43	10	8	38	1.68
15109333--15109502	29	5.9	28	77	8	144	39	12	9	38	1.75
15109333--15109502	57	2.9	59	78	4	159	39	12	9	38	1.75
15111329--15111369	18	2.3	18	80	20	50	70	7	4	17	1.28
15131678--15131764	25	3.5	25	86	10	92	14	26	11	47	1.79
15132508--15132533	2	13.0	2	100	0	52	50	0	0	50	1.00
15132720--15132745	2	13.0	2	100	0	52	50	0	0	50	1.00
15134169--15134193	11	2.3	11	100	0	50	28	0	0	72	0.86
15138239--15138359	54	2.3	53	85	1	152	35	15	14	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15146077--15146218	35	4.1	35	84	6	166	36	8	12	42	1.73
15146127--15146239	35	3.2	35	88	1	154	38	8	14	38	1.77
15155242--15155279	20	1.9	20	100	0	76	44	21	5	28	1.73
15168697--15168773	35	2.2	35	88	2	120	33	22	14	29	1.93
15168709--15168841	35	3.8	33	79	5	113	38	24	11	26	1.89
15170119--15170271	60	2.5	60	81	5	175	26	31	16	24	1.97
15177751--15177810	30	2.1	29	84	6	77	31	10	20	38	1.85
15191524--15191566	22	2.0	22	95	0	77	23	4	25	46	1.71
15200010--15200062	28	1.9	27	88	3	79	28	22	18	30	1.98
15200107--15200152	20	2.3	19	82	17	58	47	17	4	30	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91