genome.fa.s3.2.7.7.80.10.50.1000.79.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  79  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29219186--29219271	40	2.2	40	91	0	136	31	19	22	26	1.98
29230114--29230155	22	1.9	22	100	0	84	26	14	14	45	1.83
29230829--29230854	1	26.0	1	100	0	52	0	0	0	100	0.00
29247968--29247997	14	2.1	15	93	6	53	73	0	13	13	1.10
29250792--29250899	54	2.0	53	98	1	207	37	5	18	37	1.74
29252748--29252802	15	3.7	15	87	0	74	34	7	25	32	1.83
29253019--29253124	50	2.3	45	78	13	108	28	2	0	68	1.03
29253019--29253132	13	9.1	12	67	18	54	27	2	0	69	1.08
29253270--29253347	13	6.0	14	74	19	71	48	1	0	50	1.09
29276217--29278076	370	5.0	369	91	3	2685	50	7	9	32	1.62
29276217--29278082	754	2.5	737	88	4	2289	50	7	9	32	1.62
29280260--29280296	18	2.1	18	100	0	74	16	21	16	45	1.84
29289931--29290002	22	3.3	22	84	0	81	25	9	16	48	1.76
29290014--29290115	22	4.5	23	76	6	93	37	28	12	21	1.90
29290078--29290213	22	6.2	22	74	5	87	45	24	8	21	1.80
29290104--29290189	44	2.0	43	81	2	100	44	20	10	24	1.83
29292622--29292731	55	2.0	55	98	0	211	21	11	10	56	1.64
29294969--29295030	21	3.0	21	73	7	63	53	1	1	43	1.20
29294976--29295055	42	1.9	42	92	5	135	57	1	1	40	1.15
29295026--29295097	12	5.9	12	68	20	51	58	1	0	40	1.07
29294966--29295101	23	6.0	22	72	16	82	56	1	0	41	1.13
29295020--29295070	26	2.0	26	92	0	84	60	1	0	37	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29295363--29295467	24	4.5	22	73	15	72	53	0	1	43	1.18
29295298--29295584	139	2.1	136	89	6	431	55	1	3	40	1.22
29295300--29295584	66	4.2	65	73	14	211	55	1	3	40	1.23
29295489--29295545	25	2.3	25	81	6	71	56	0	1	42	1.10
29295539--29295618	26	3.0	25	79	13	81	52	1	1	45	1.16
29295363--29295605	69	3.6	66	72	14	208	54	0	2	41	1.21
29295523--29295632	15	7.3	15	69	22	63	50	0	0	47	1.13
29295561--29295618	22	2.8	20	80	12	64	53	0	0	46	1.00
29295507--29295625	34	3.6	34	72	16	106	51	0	0	47	1.12
29295574--29295618	22	2.1	21	88	8	65	51	0	0	48	1.00
29295671--29295702	15	2.1	15	94	0	55	12	3	0	84	0.74
29301138--29301278	29	4.7	30	80	9	153	34	8	11	45	1.71
29301138--29301278	61	2.4	59	82	8	176	34	8	11	45	1.71
29301334--29301429	45	2.1	45	90	0	156	30	18	15	35	1.92
29317860--29317925	31	2.1	31	88	0	96	65	4	16	13	1.43
29325349--29325418	34	2.1	33	81	7	79	40	17	15	27	1.90
29325486--29325529	23	1.9	23	90	0	70	31	20	11	36	1.88
29338216--29338304	45	2.0	45	100	0	178	30	26	11	31	1.91
29342868--29342909	3	14.0	3	89	0	66	35	0	2	61	1.09
29343537--29343573	18	2.1	18	89	0	56	40	10	5	43	1.63
29349044--29349120	25	2.9	28	70	18	81	45	11	20	22	1.83
29356582--29356662	24	3.4	24	73	19	78	41	2	8	46	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29356571--29356664	48	1.9	49	85	6	129	40	4	8	46	1.54
29375816--29375956	73	1.9	73	91	2	230	27	24	9	38	1.87
29388110--29388209	47	2.1	47	94	0	173	18	30	16	36	1.92
29392901--29392939	2	19.5	2	100	0	78	0	51	0	48	1.00
29397955--29398151	98	2.0	98	100	0	394	40	15	17	26	1.89
29401147--29401187	19	2.2	19	100	0	82	51	17	9	21	1.74
29422983--29423015	10	3.4	10	91	8	59	45	0	0	54	0.99
29422977--29423015	19	2.0	19	90	5	60	48	0	2	48	1.15
29431736--29431767	2	16.5	2	93	6	57	50	0	0	50	1.00
29439078--29439102	13	1.9	13	100	0	50	84	0	0	16	0.63
29465792--29465840	18	2.7	18	77	0	53	79	4	0	16	0.88
29466263--29466302	17	2.5	15	80	11	53	75	2	0	22	0.93
29467131--29467166	2	17.5	2	88	5	54	52	2	0	44	1.15
29468459--29468515	2	28.5	2	79	13	64	43	1	5	49	1.35
29468461--29468515	25	2.4	24	85	11	71	43	1	5	49	1.36
29469544--29469632	24	3.5	26	68	15	71	19	4	2	74	1.10
29483989--29484114	38	3.3	38	95	1	218	37	9	8	44	1.68
29484005--29484105	19	5.2	21	60	26	60	37	9	10	41	1.74
29488620--29488667	11	4.5	10	82	7	51	79	2	14	4	0.98
29488633--29488676	21	2.0	21	86	13	61	77	2	20	0	0.88
29507063--29507145	39	2.1	40	84	6	107	46	14	2	36	1.58
29515875--29515921	24	1.9	24	86	4	67	65	14	2	17	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29518014--29518044	2	15.5	2	100	0	62	48	0	0	51	1.00
29524572--29524600	15	2.0	15	93	6	51	6	27	0	65	1.18
29524747--29524798	24	2.1	25	82	10	63	7	1	13	76	1.07
29529123--29529148	2	13.0	2	100	0	52	50	0	0	50	1.00
29534214--29534296	2	43.5	2	86	13	122	50	1	0	48	1.08
29534218--29534291	39	1.9	38	97	2	139	50	1	0	48	1.09
29544734--29544771	6	6.3	6	100	0	76	31	18	18	31	1.95
29548856--29548912	29	2.0	29	92	0	96	43	7	29	19	1.77
29560139--29560213	33	2.3	33	80	0	87	48	8	8	36	1.62
29561767--29561804	20	1.9	20	84	10	51	10	13	13	63	1.53
29567993--29568065	37	2.0	37	100	0	146	35	19	6	38	1.78
29578905--29578978	37	2.0	36	92	7	123	44	2	8	43	1.48
29578977--29579001	2	12.5	2	100	0	50	52	0	0	48	1.00
29579850--29579880	7	4.4	7	100	0	62	45	0	41	12	1.42
29599500--29599600	29	3.5	29	78	2	87	55	3	15	24	1.58
29603904--29603976	10	6.9	10	71	21	51	56	0	43	0	0.99
29603900--29603996	33	3.1	32	78	19	98	57	1	41	0	1.05
29603911--29603997	7	13.0	7	71	20	62	57	1	41	0	1.06
29603910--29604018	45	2.4	48	82	11	122	56	2	40	0	1.13
29603944--29604049	45	2.4	45	77	4	108	55	4	39	0	1.21
29605371--29605411	2	20.5	2	100	0	82	51	0	0	48	1.00
29608393--29608429	2	18.5	2	100	0	74	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29608492--29608528	2	18.5	2	100	0	74	48	0	0	51	1.00
29608393--29608588	102	1.9	101	96	1	365	43	6	15	33	1.73
29617877--29617922	19	2.5	19	93	6	78	26	34	26	13	1.92
29624578--29624653	39	1.9	39	97	0	143	23	11	13	51	1.74
29624774--29625191	107	3.9	106	84	4	545	33	9	9	47	1.68
29624942--29624991	23	2.2	24	85	7	68	48	12	6	34	1.65
29624782--29625200	215	1.9	216	90	2	673	33	10	8	47	1.68
29629238--29629513	138	2.0	139	87	0	401	22	11	14	52	1.73
29636365--29636409	17	2.6	17	75	0	54	24	0	11	64	1.26
29644799--29644851	18	2.9	18	85	0	70	47	5	3	43	1.45
29644968--29645011	15	2.9	15	83	10	54	29	0	6	63	1.20
29669263--29669368	49	2.2	49	96	0	194	41	23	6	28	1.79
29674006--29674053	17	2.7	18	77	6	53	33	0	6	60	1.22
29686061--29686096	2	18.0	2	88	0	54	50	5	0	44	1.25
29686061--29686096	12	3.0	12	95	0	63	50	5	0	44	1.25
29697534--29697580	19	2.4	20	86	10	62	74	8	17	0	1.05
29698169--29698246	2	39.0	2	84	5	104	44	2	0	51	1.15
29700024--29700127	30	3.5	30	73	14	90	38	3	3	53	1.37
29700177--29700271	33	2.9	33	80	1	93	42	7	11	38	1.69
29701075--29701137	16	3.7	17	76	14	67	68	1	1	28	1.08
29701855--29701900	14	3.3	14	85	14	60	63	0	2	34	1.07
29701856--29701907	15	3.5	15	79	10	54	67	0	1	30	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29706024--29706056	16	1.9	18	88	11	52	42	0	0	57	0.98
29710011--29710041	16	1.9	16	93	0	53	77	0	3	19	0.90
29710168--29710207	19	2.3	19	83	12	50	25	0	7	67	1.16
29710172--29710339	89	1.9	90	83	6	225	39	1	3	55	1.25
29710295--29710347	27	2.0	27	100	0	106	47	0	3	49	1.19
29723925--29723978	2	26.5	2	88	3	81	46	0	3	48	1.20
29724497--29724526	3	10.0	3	92	0	51	33	0	3	63	1.11
29734219--29734251	17	1.9	17	88	11	50	57	0	0	42	0.98
29738831--29738867	2	18.5	2	100	0	74	51	0	0	48	1.00
29740610--29740675	33	2.0	33	100	0	132	48	21	12	18	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91