genome.fa.s3.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  52  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18253379--18253460	37	2.2	37	91	4	130	26	35	9	28	1.88
18256228--18256270	2	21.5	2	90	0	68	46	2	0	51	1.13
18269905--18269989	37	2.4	35	82	4	98	17	40	4	37	1.71
18274746--18274778	2	16.5	2	100	0	66	51	0	0	48	1.00
18278431--18278600	85	2.0	85	98	1	324	21	22	9	46	1.79
18282909--18282949	21	1.9	21	85	5	55	51	7	21	19	1.71
18282907--18282954	21	2.3	20	75	10	51	56	6	20	16	1.62
18288992--18289031	17	2.3	18	86	4	55	10	30	2	57	1.45
18292747--18292833	43	2.0	43	89	8	133	20	36	18	24	1.95
18298085--18298114	16	1.9	15	93	6	51	20	0	20	60	1.37
18298553--18298725	42	4.1	42	77	6	134	22	19	33	24	1.97
18298701--18298748	26	1.9	24	83	8	60	25	8	41	25	1.83
18298750--18298837	2	45.0	2	81	4	90	47	2	4	44	1.36
18315316--18315352	2	18.5	2	100	0	74	48	0	0	51	1.00
18316261--18316285	12	2.1	12	100	0	50	36	0	0	64	0.94
18319938--18320017	2	40.5	2	96	2	144	51	0	1	47	1.08
18321243--18321279	16	2.3	16	90	0	56	56	2	2	37	1.28
18332127--18332166	2	20.0	2	94	0	71	50	2	0	47	1.14
18332361--18332447	21	4.1	21	89	1	93	21	24	20	33	1.97
18332393--18332452	21	2.9	21	100	0	120	18	18	23	40	1.92
18354003--18354035	15	2.1	16	88	5	50	30	6	21	42	1.77
18364379--18364508	67	1.9	67	98	0	251	28	18	13	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18366807--18366899	36	2.6	35	77	5	96	30	10	25	33	1.90
18373107--18373151	22	2.1	21	83	4	54	17	8	2	71	1.23
18378429--18378486	28	2.1	28	96	0	107	27	8	10	53	1.64
18380985--18381062	42	1.9	41	84	7	106	38	17	15	28	1.91
18381063--18381101	18	2.2	18	85	0	51	41	15	7	35	1.76
18381455--18381489	18	1.9	18	88	0	52	48	20	8	22	1.76
18381849--18381927	41	1.9	41	82	5	97	58	2	8	30	1.42
18391051--18391113	21	3.0	21	92	0	108	39	17	17	25	1.91
18392601--18392659	17	3.5	17	75	15	68	59	6	3	30	1.40
18392594--18392659	33	2.1	32	91	5	107	63	6	3	27	1.32
18392950--18393030	8	10.4	8	78	4	67	29	40	0	29	1.57
18392950--18393030	16	5.2	16	74	4	76	29	40	0	29	1.57
18392972--18393030	24	2.5	24	94	0	100	30	42	0	27	1.56
18393048--18393090	10	4.2	10	79	5	50	16	0	2	81	0.79
18393048--18393093	13	3.8	12	81	15	51	17	0	2	80	0.81
18394661--18394707	22	2.1	23	84	11	62	29	4	14	51	1.62
18402504--18402540	2	18.5	2	89	10	58	48	2	0	48	1.15
18402503--18402546	10	4.4	10	85	0	52	47	9	0	43	1.35
18404827--18404939	42	2.7	42	90	0	172	23	33	21	21	1.97
18405703--18405728	3	8.7	3	100	0	52	65	0	34	0	0.93
18409767--18409849	42	2.0	43	95	2	150	26	19	33	20	1.96
18416407--18416457	2	25.5	2	100	0	102	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18422121--18422260	36	3.9	36	86	1	192	35	17	30	16	1.92
18422121--18422260	72	1.9	72	89	2	219	35	17	30	16	1.92
18422607--18422643	19	1.9	19	94	0	65	24	0	29	45	1.53
18425865--18425897	2	16.5	2	100	0	66	51	48	0	0	1.00
18436851--18436891	2	20.5	2	100	0	82	51	0	0	48	1.00
18438442--18438551	41	2.7	40	87	2	166	22	33	17	26	1.96
18441195--18441228	14	2.4	14	95	5	59	70	0	29	0	0.87
18441197--18441237	19	2.2	19	86	0	55	70	2	24	2	1.11
18449071--18449180	43	2.6	43	85	0	139	20	32	18	28	1.96
18453937--18453996	20	3.0	20	80	7	70	53	0	6	40	1.27
18458628--18458734	43	2.4	46	85	9	166	21	29	20	28	1.98
18458628--18458749	43	2.8	43	84	3	145	21	31	19	27	1.97
18459486--18459518	2	16.5	2	100	0	66	0	48	0	51	1.00
18463828--18463887	30	2.1	29	81	6	68	31	8	21	38	1.83
18480031--18480102	27	2.8	26	76	17	69	47	4	1	47	1.30
18485886--18485922	18	2.1	18	100	0	74	16	24	27	32	1.96
18492454--18492584	38	3.5	37	80	4	127	22	16	22	38	1.93
18493643--18493687	20	2.2	21	84	11	58	55	8	20	15	1.66
18493642--18493689	21	2.2	21	78	10	53	58	8	18	14	1.61
18513532--18513590	25	2.4	24	77	8	64	11	33	13	40	1.81
18513586--18513650	12	5.7	12	75	15	66	1	21	1	75	0.97
18513586--18513652	11	5.9	11	79	10	64	1	22	1	74	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18513586--18513652	23	3.0	22	72	14	64	1	22	1	74	0.98
18513763--18513955	35	5.6	34	80	7	212	29	24	5	41	1.76
18513767--18513955	70	2.7	70	86	4	251	29	24	5	40	1.77
18514008--18514094	45	2.0	44	88	6	131	13	39	2	44	1.57
18519571--18519613	21	2.0	21	81	0	50	25	25	18	30	1.98
18522592--18522630	18	2.1	18	85	4	51	46	2	0	51	1.14
18527503--18527694	35	5.5	34	78	8	199	29	22	6	41	1.79
18527503--18527709	70	2.9	70	81	7	249	28	23	6	41	1.80
18528297--18528325	13	2.1	14	93	6	51	31	0	0	68	0.89
18531337--18531384	20	2.5	20	86	3	71	47	6	31	14	1.69
18536353--18536393	21	2.1	19	86	9	55	60	9	0	29	1.28
18537134--18537201	29	2.4	28	80	9	75	29	32	14	23	1.94
18543109--18543142	2	17.0	2	100	0	68	50	0	0	50	1.00
18548448--18548488	21	1.9	22	90	5	66	51	7	24	17	1.70
18548448--18548492	20	2.2	21	84	11	58	55	6	22	15	1.63
18548446--18548493	21	2.3	20	79	10	60	56	6	22	14	1.61
18556745--18556777	10	3.3	10	91	0	57	18	0	12	69	1.18
18558418--18558507	21	4.3	21	92	2	137	24	23	22	30	1.99
18558435--18558498	12	5.8	12	65	20	50	25	23	21	29	1.99
18559333--18559359	6	4.5	6	100	0	54	0	33	14	51	1.43
18562991--18563023	17	1.9	17	88	11	50	42	15	3	39	1.62
18563186--18563338	28	5.3	28	80	10	166	37	11	10	40	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18575413--18575467	28	1.9	29	85	3	76	23	20	20	36	1.95
18580967--18581069	38	2.6	39	85	8	140	22	38	16	22	1.92
18587665--18587698	16	2.1	16	100	0	68	29	26	5	38	1.80
18593853--18593979	64	2.0	64	90	3	202	36	27	13	22	1.92
18594049--18594115	32	2.1	32	85	0	89	34	25	16	23	1.95
18595670--18595759	46	2.0	45	93	2	153	42	13	11	32	1.79
18600671--18600718	22	2.2	22	92	0	78	35	14	41	8	1.76
18600818--18600874	25	2.2	25	78	9	62	45	12	22	19	1.83
18621719--18621817	19	5.1	19	66	9	74	20	17	41	21	1.90
18621715--18621817	38	2.6	40	87	6	149	19	16	41	22	1.90
18627607--18627787	73	2.5	73	80	7	190	24	20	16	37	1.93
18633597--18633645	23	2.1	24	88	11	75	71	0	28	0	0.86
18633600--18633659	28	2.1	29	90	3	95	71	0	26	1	0.95
18633615--18633680	18	3.8	17	79	16	64	71	0	27	1	0.95
18633634--18633681	18	2.6	19	87	6	73	66	0	31	2	1.03
18635015--18635050	2	18.0	2	100	0	72	50	0	0	50	1.00
18651933--18651976	21	2.2	20	83	4	52	45	13	18	22	1.84
18655887--18656052	43	4.0	42	78	12	162	22	33	18	24	1.97
18658007--18658170	43	3.9	43	85	6	228	21	34	18	25	1.96
18678195--18678221	2	13.5	2	100	0	54	0	51	0	48	1.00
18681320--18681461	77	1.9	73	89	5	221	28	33	17	20	1.95
18685191--18685230	15	2.7	15	88	0	53	25	2	10	62	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18694011--18694063	28	1.9	27	88	3	79	28	22	18	30	1.98
18699805--18699861	29	2.0	29	89	0	87	21	8	19	50	1.74
18703405--18703493	35	2.7	33	77	8	99	39	26	13	20	1.90
18703598--18703735	35	4.1	32	75	13	125	34	26	14	23	1.94
18703598--18703735	67	2.1	67	92	0	231	34	26	14	23	1.94
18703381--18703843	246	1.9	246	94	0	820	36	23	13	26	1.92
18706037--18706300	80	3.3	79	85	3	325	32	9	23	34	1.87
18707703--18707744	21	2.0	21	90	0	66	21	26	16	35	1.94
18707666--18707797	60	2.2	61	81	8	146	27	23	21	27	1.99
18709721--18709756	19	1.9	19	94	5	65	55	0	0	44	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91