genome.fa.s3.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  53  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18710468--18710620	34	4.5	33	79	7	121	52	3	35	9	1.50
18711372--18711567	32	5.9	32	79	7	196	35	26	14	23	1.93
18711404--18711567	67	2.4	67	89	2	249	35	26	13	24	1.92
18716826--18716898	29	2.4	29	79	4	92	30	8	13	47	1.72
18718497--18718769	80	3.4	80	88	2	386	32	8	24	34	1.86
18723343--18723401	8	7.2	8	72	16	50	47	0	0	52	1.00
18723487--18723526	15	2.4	17	84	16	57	57	0	2	40	1.12
18724174--18724249	34	2.2	34	95	0	134	50	11	10	27	1.72
18725962--18726026	29	2.3	29	89	5	98	36	15	4	43	1.67
18731578--18731667	2	47.5	2	83	14	120	51	1	0	47	1.08
18748116--18748182	2	33.5	2	93	0	116	49	0	1	49	1.10
18762609--18762634	13	2.0	13	100	0	52	23	23	23	30	1.99
18764739--18764768	11	2.8	11	95	5	53	70	10	0	20	1.16
18771463--18771497	2	17.5	2	93	0	61	48	0	2	48	1.16
18776699--18776736	20	1.9	20	88	0	58	63	5	15	15	1.48
18788335--18788376	21	2.0	21	81	9	50	16	2	4	76	1.07
18790717--18790823	38	2.7	40	85	4	155	23	42	14	19	1.89
18790797--18790965	71	2.4	71	96	0	320	23	42	13	20	1.87
18797921--18797949	15	2.0	15	93	6	51	48	6	0	44	1.29
18809899--18809931	17	2.0	17	88	5	50	51	3	6	39	1.42
18811420--18811478	20	3.0	20	89	0	91	25	15	16	42	1.88
18812340--18812391	26	2.0	26	88	0	77	48	17	9	25	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18813288--18813332	18	2.6	16	83	16	54	75	0	0	24	0.80
18813529--18813606	23	3.3	23	71	16	77	67	2	28	1	1.11
18813669--18813753	35	2.5	34	84	5	118	18	12	31	36	1.89
18813784--18813874	36	2.6	35	79	8	96	20	10	32	35	1.88
18813888--18813978	35	2.6	35	87	0	128	24	7	32	35	1.84
18824161--18824200	21	1.9	21	94	0	71	20	22	20	37	1.94
18831900--18831952	28	1.9	27	88	3	79	28	22	18	30	1.98
18831997--18832042	20	2.3	20	92	0	74	45	19	4	30	1.70
18833168--18833201	15	2.2	16	89	5	52	70	0	2	26	1.01
18833760--18833822	33	1.9	33	90	0	99	20	20	30	28	1.98
18837409--18837473	30	2.2	30	88	5	96	49	4	33	12	1.61
18845247--18845286	21	1.9	21	89	0	62	20	17	15	47	1.83
18845271--18845443	72	2.4	72	88	1	240	21	21	17	39	1.92
18849571--18849612	20	2.1	20	95	0	75	42	23	4	28	1.74
18851435--18851473	19	2.1	19	85	9	53	53	0	7	38	1.30
18851838--18851881	22	2.0	23	86	4	63	45	9	25	20	1.80
18852587--18852632	24	2.0	23	83	12	58	67	0	30	2	1.03
18861566--18861613	20	2.4	20	92	0	78	25	41	8	25	1.83
18878492--18878527	2	18.0	2	100	0	72	50	0	0	50	1.00
18878656--18878752	37	2.6	38	85	3	115	23	17	35	23	1.96
18881921--18882026	40	2.7	40	86	0	158	24	19	33	21	1.97
18883492--18883531	20	2.0	20	85	0	53	17	35	7	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18884299--18884327	2	14.5	2	100	0	58	51	0	0	48	1.00
18887968--18888006	15	2.5	16	87	4	53	0	33	0	66	0.92
18887971--18888024	20	2.7	20	91	0	90	0	35	0	64	0.94
18887950--18888026	13	5.5	15	73	21	62	1	35	0	63	1.03
18891075--18891455	80	4.8	80	88	3	529	34	23	9	32	1.88
18892714--18892754	18	2.3	18	100	0	82	17	26	0	56	1.41
18894509--18894765	54	4.8	54	92	0	424	22	44	14	19	1.86
18894907--18894946	2	20.5	2	94	5	73	52	0	0	47	1.00
18905928--18905970	22	2.0	20	86	8	59	30	25	9	34	1.87
18915579--18915842	54	4.9	54	84	1	341	24	40	13	21	1.90
18916022--18916058	2	18.5	2	100	0	74	48	0	0	51	1.00
18920217--18920243	2	13.5	2	100	0	54	51	0	0	48	1.00
18921223--18921259	19	1.9	19	89	10	58	70	2	21	5	1.20
18922094--18922136	2	21.5	2	100	0	86	51	0	0	48	1.00
18941893--18942075	72	2.6	72	81	4	228	44	15	18	21	1.87
18944181--18944213	17	1.9	17	100	0	66	21	36	12	30	1.90
18976368--18976408	16	2.5	17	81	18	52	70	4	0	24	1.06
18977721--18977785	25	2.7	24	83	4	94	47	23	16	12	1.80
18984302--18984436	4	33.8	4	79	0	90	42	6	7	42	1.59
18984302--18984426	20	6.6	18	88	3	142	44	7	6	42	1.57
18984306--18984437	10	13.0	10	68	9	79	42	6	8	42	1.61
18986930--18986960	15	2.1	15	93	0	53	19	38	9	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18991868--18991967	42	2.4	42	87	0	146	22	28	24	26	1.99
18996947--18997008	26	2.4	26	94	0	106	32	40	3	24	1.71
18997243--18997366	42	3.0	42	92	0	212	22	33	21	21	1.97
19001628--19001793	73	2.3	73	81	5	185	20	19	19	40	1.91
19002142--19002176	17	2.1	17	88	0	52	11	37	22	28	1.89
19010738--19010778	20	2.1	19	86	4	55	24	12	12	51	1.73
19015628--19015828	29	7.0	28	84	7	210	38	11	10	39	1.77
19029890--19030238	128	2.7	129	80	4	389	35	23	17	23	1.95
19036745--19036791	23	2.0	24	88	12	71	31	2	2	63	1.18
19037655--19037686	13	2.5	13	94	0	55	0	25	9	65	1.22
19037636--19037727	45	2.0	46	93	2	159	5	25	6	63	1.40
19038267--19038326	30	2.1	29	81	6	68	31	8	21	38	1.83
19042697--19042765	36	1.9	36	85	5	95	40	14	14	30	1.86
19049186--19049336	59	2.6	59	84	4	173	39	13	6	41	1.70
19049194--19049336	29	5.0	28	76	6	133	39	13	6	39	1.72
19050512--19050561	24	2.1	24	96	0	91	26	8	32	34	1.85
19055229--19055269	20	2.0	20	100	0	82	14	24	9	51	1.72
19067115--19067197	44	2.0	41	90	9	123	37	6	8	46	1.59
19076426--19076531	2	52.5	2	83	9	117	48	2	4	43	1.38
19077298--19077364	4	16.5	4	73	17	50	2	23	0	73	0.97
19077307--19077367	28	2.2	28	87	0	86	1	24	0	73	0.92
19077289--19077364	33	2.3	33	86	6	100	2	23	0	73	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19086605--19086746	36	3.9	36	74	14	107	33	21	12	33	1.91
19092319--19092366	19	2.6	19	83	3	62	56	0	4	39	1.19
19093224--19093257	16	2.1	16	94	0	59	79	0	20	0	0.73
19098503--19098527	3	8.3	3	100	0	50	0	0	64	36	0.94
19107200--19107243	2	22.0	2	100	0	88	50	0	0	50	1.00
19112360--19112393	3	11.3	3	100	0	68	67	0	32	0	0.91
19118563--19118597	8	4.2	8	89	7	52	77	0	0	22	0.78
19118564--19118596	17	1.9	17	93	0	57	75	0	0	24	0.80
19134642--19134667	10	2.6	10	100	0	52	65	0	7	26	1.20
19135975--19136035	21	2.9	21	97	0	113	16	14	31	37	1.89
19140836--19141449	169	3.7	168	84	4	722	36	13	15	34	1.87
19144454--19144509	20	2.8	20	86	0	76	37	10	39	12	1.78
19158383--19158423	22	1.9	22	85	14	59	21	17	12	48	1.79
19159494--19159575	36	2.2	36	86	2	110	37	8	13	40	1.75
19161090--19161133	19	2.2	19	84	8	52	20	31	9	38	1.84
19161220--19161274	20	2.6	21	85	5	76	63	3	32	0	1.12
19164110--19164263	72	2.1	72	80	7	168	31	26	17	24	1.97
19164138--19164274	73	1.9	72	86	1	193	30	25	18	24	1.98
19164271--19164319	22	2.2	22	92	0	80	18	20	28	32	1.96
19164284--19164328	22	2.0	22	86	0	63	22	24	28	24	1.99
19167321--19167347	2	13.5	2	100	0	54	51	0	0	48	1.00
19167397--19167551	37	4.2	37	84	4	206	25	36	10	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19168252--19168302	2	25.5	2	100	0	102	50	0	49	0	1.00
19177804--19177957	42	3.7	42	81	0	164	24	20	33	22	1.97
19177811--19177970	84	1.9	84	82	0	203	24	18	33	23	1.97
19177998--19178027	2	15.0	2	92	0	51	50	3	0	46	1.18
19190276--19190394	37	3.2	36	89	4	175	29	10	36	24	1.88
19190847--19190907	19	3.2	19	83	2	86	29	26	24	19	1.99
19191738--19191766	4	7.5	4	92	7	51	75	0	0	24	0.80
19191741--19191782	12	3.6	11	84	12	50	76	0	2	21	0.90
19192235--19192375	35	4.0	35	71	12	92	24	11	33	31	1.90
19193793--19193869	40	2.0	40	82	5	95	22	16	35	25	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91