genome.fa.s3.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  81  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30373074--30373120	17	2.8	17	74	9	51	38	0	0	61	0.96
30373545--30373597	24	2.2	25	80	16	67	20	7	1	69	1.22
30373836--30373874	18	2.2	18	86	4	53	28	0	20	51	1.48
30374316--30374418	27	4.2	26	74	21	98	55	0	0	43	1.06
30374301--30374413	22	5.0	22	72	18	81	51	0	0	46	1.13
30374346--30374415	21	3.3	20	75	16	79	55	0	0	44	0.99
30374374--30374422	22	2.2	22	82	7	64	59	0	0	40	0.98
30387378--30387407	15	2.0	15	93	0	51	50	23	13	13	1.77
30399776--30399846	30	2.4	30	97	0	133	18	43	11	26	1.83
30412717--30412758	16	2.6	17	85	11	61	0	45	0	54	0.99
30419503--30419557	18	2.9	18	71	10	56	49	3	1	45	1.30
30419503--30419561	20	3.0	20	74	13	61	49	3	1	45	1.28
30434591--30434680	44	2.0	45	85	6	121	50	4	0	44	1.22
30434679--30434904	67	3.3	67	74	20	216	57	3	0	38	1.21
30434707--30434905	75	2.9	65	73	22	190	58	3	1	37	1.20
30434747--30434853	27	4.3	24	73	18	60	53	1	0	43	1.18
30434645--30434905	140	1.9	140	91	3	436	56	3	0	39	1.20
30434805--30434857	27	2.0	27	100	0	106	49	3	0	47	1.19
30434641--30434868	75	3.2	72	74	21	235	55	3	0	40	1.21
30434926--30434975	27	2.0	26	84	11	68	46	4	2	48	1.32
30434786--30435003	112	1.9	113	83	6	282	53	3	1	41	1.27
30435907--30435960	24	2.2	24	79	20	60	35	0	3	61	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30436153--30436203	24	2.1	24	85	3	66	43	0	1	54	1.11
30455820--30455866	24	2.0	24	95	0	85	46	17	14	21	1.83
30455979--30456003	10	2.5	10	100	0	50	28	0	0	72	0.86
30455993--30456032	22	1.9	22	85	10	57	27	7	5	60	1.45
30455992--30456038	20	2.2	21	79	17	53	27	6	4	61	1.39
30458975--30459003	1	29.0	1	100	0	58	0	0	0	100	0.00
30459288--30459385	9	10.4	9	81	5	70	23	0	1	75	0.86
30459285--30459342	13	4.2	13	78	8	62	18	0	0	81	0.70
30459290--30459389	19	5.4	20	75	21	78	24	0	1	75	0.87
30459285--30459389	5	21.6	5	75	18	62	22	0	0	76	0.85
30459323--30459389	9	7.3	9	85	6	73	25	0	1	73	0.92
30460377--30460470	29	3.2	29	77	14	95	54	4	6	35	1.46
30464684--30464727	9	4.9	9	80	0	52	34	6	43	15	1.74
30470643--30470676	2	17.0	2	100	0	68	50	0	0	50	1.00
30473139--30473259	60	2.0	60	90	3	190	23	21	18	37	1.94
30492366--30492445	40	2.0	40	100	0	160	35	15	17	32	1.91
30492728--30492887	80	2.0	80	96	0	293	47	10	16	25	1.79
30495886--30495944	29	2.0	29	100	0	118	28	10	10	50	1.68
30495886--30495968	29	2.9	30	87	3	91	22	13	9	54	1.68
30530877--30530922	22	2.1	22	87	0	65	43	0	2	54	1.12
30539686--30539753	34	2.0	34	82	5	84	7	4	22	66	1.35
30540402--30540447	19	2.3	20	88	7	67	50	2	0	47	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30551498--30551527	13	2.3	13	100	0	60	70	0	0	30	0.88
30572791--30572833	17	2.6	16	82	13	52	51	0	6	41	1.29
30572822--30573244	203	2.1	204	86	5	584	47	5	6	40	1.51
30585188--30585246	32	1.9	31	86	6	84	59	8	10	22	1.56
30587344--30587419	37	2.1	37	85	5	100	9	48	7	34	1.64
30588472--30588661	85	2.3	83	86	3	247	41	10	7	40	1.67
30591884--30591921	19	2.0	19	89	0	58	44	0	2	52	1.14
30592132--30592175	22	1.9	24	81	9	56	43	2	2	52	1.26
30592776--30592841	30	2.2	30	100	0	132	42	7	19	30	1.79
30598645--30598684	15	2.5	16	84	12	55	77	0	22	0	0.77
30598645--30598684	16	2.5	15	88	8	53	77	0	22	0	0.77
30601776--30601976	85	2.4	85	97	0	375	24	23	22	28	1.99
30602906--30602947	22	1.9	22	95	0	75	40	0	4	54	1.21
30603213--30603270	6	9.2	6	75	9	53	74	1	0	24	0.92
30603214--30603270	19	3.1	19	75	10	55	73	1	0	24	0.92
30603400--30603452	23	2.4	22	77	3	61	35	1	0	62	1.06
30607693--30607769	36	2.1	36	85	0	109	50	23	16	9	1.74
30607714--30607838	36	3.5	36	75	16	107	46	20	20	12	1.83
30607700--30607982	153	1.8	153	80	8	344	48	22	16	11	1.79
30608712--30608736	2	12.5	2	100	0	50	0	52	0	48	1.00
30630550--30630576	7	3.9	7	100	0	54	14	29	29	25	1.95
30635790--30635869	27	3.1	27	66	23	80	37	11	13	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30640683--30640728	6	7.5	6	90	4	56	0	41	0	58	0.98
30640686--30640727	2	21.5	2	80	4	50	0	42	0	57	0.99
30645193--30645226	3	11.0	3	93	6	59	0	32	0	67	0.91
30646554--30646674	2	63.0	2	81	14	130	47	3	0	47	1.24
30646544--30646676	65	2.0	64	95	4	239	42	6	1	48	1.39
30667259--30667301	18	2.5	16	81	11	50	53	2	2	41	1.26
30684173--30684211	19	2.1	19	85	9	53	71	17	5	5	1.23
30712488--30712570	24	3.5	24	80	6	114	33	20	28	16	1.95
30712656--30712759	24	4.3	24	91	0	163	17	24	43	15	1.87
30715336--30715392	23	2.3	26	85	11	75	59	8	0	31	1.28
30715933--30715981	20	2.5	20	83	9	57	42	2	0	55	1.11
30717198--30717272	22	3.2	22	75	7	60	60	1	1	37	1.14
30717493--30717545	20	2.6	19	75	19	54	47	0	0	52	1.00
30719854--30719910	30	1.9	30	92	0	96	36	8	8	45	1.66
30724229--30724401	87	2.0	87	88	4	260	24	22	8	43	1.81
30724492--30724643	75	2.0	75	87	0	214	24	29	7	38	1.82
30727290--30727436	75	2.0	75	87	2	215	36	24	14	23	1.93
30730774--30730832	22	2.7	22	100	0	118	59	0	0	40	0.97
30731044--30731122	40	2.0	39	85	7	106	32	0	1	65	1.00
30731452--30731528	35	2.2	36	79	11	88	42	3	0	53	1.19
30745353--30745409	9	6.3	9	77	0	60	24	8	24	42	1.83
30745353--30745409	18	3.2	18	84	0	87	24	8	24	42	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30761374--30761404	2	15.5	2	100	0	62	51	0	0	48	1.00
30771874--30771899	3	8.7	3	100	0	52	34	0	34	30	1.58
30780568--30780645	27	2.9	27	80	12	83	55	0	1	43	1.08
30780607--30780670	20	3.1	19	70	16	56	57	1	0	40	1.08
30780568--30780639	26	2.7	27	81	12	80	54	0	1	44	1.08
30780971--30781135	50	3.2	49	74	10	143	16	33	29	20	1.95
30785720--30785861	57	2.5	55	79	8	142	63	4	24	7	1.40
30786918--30787117	102	2.0	102	84	2	267	42	12	13	32	1.81
30794263--30794309	18	2.6	18	82	0	58	23	12	31	31	1.92
30796399--30796437	2	19.5	2	94	0	69	0	51	0	48	1.00
30803252--30803306	29	1.9	28	89	10	85	54	1	12	30	1.48
30803322--30803365	21	2.2	19	84	8	52	45	0	0	54	0.99
30803319--30803363	23	2.0	23	82	8	56	44	0	0	55	0.99
30807195--30807232	17	2.2	18	85	4	51	36	0	2	60	1.11
30808481--30808715	58	4.0	59	83	5	298	14	11	19	54	1.70
30808483--30808715	117	2.0	117	86	5	328	15	11	19	54	1.71
30824829--30824886	20	2.9	20	73	19	66	37	31	5	25	1.78
30824823--30824886	21	3.1	21	74	17	71	39	31	4	25	1.76
30830582--30830645	33	2.0	30	85	8	83	39	10	0	50	1.38
30830949--30831015	29	2.3	28	80	10	71	47	8	0	43	1.34
30841224--30841368	62	2.3	63	82	10	190	33	17	15	32	1.92
30843688--30843718	5	6.2	5	100	0	62	38	61	0	0	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30847144--30847252	39	2.8	39	80	5	121	21	27	6	44	1.76
30880175--30880272	25	3.5	29	73	21	84	39	3	2	55	1.27
30894113--30894159	22	2.2	21	84	3	58	34	2	0	63	1.06
30901631--30901662	2	16.0	2	93	0	55	53	0	0	46	1.00
30901662--30901691	2	15.0	2	100	0	60	50	0	50	0	1.00
30901745--30901780	2	18.0	2	100	0	72	50	0	50	0	1.00
30907783--30907825	2	21.5	2	100	0	86	51	0	48	0	1.00
30907845--30907908	2	33.0	2	84	12	89	50	3	46	0	1.17
30910319--30910349	3	10.3	3	100	0	62	67	0	0	32	0.91
30910536--30910654	61	1.9	59	85	9	159	50	5	5	39	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91