genome.fa.s3.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  21  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6911375--6911463	32	2.7	32	84	10	101	22	3	0	74	0.97
6911396--6911448	26	2.0	26	89	7	81	24	0	0	75	0.80
6911397--6911463	17	3.9	17	79	16	68	22	1	0	76	0.87
6912460--6912504	20	2.2	20	85	14	58	26	11	4	57	1.52
6921067--6921097	11	2.8	11	95	0	53	0	9	0	90	0.46
6921067--6921105	11	3.5	11	89	0	51	5	7	0	87	0.68
6921443--6921467	12	2.1	12	100	0	50	40	0	8	52	1.31
6926051--6926093	18	2.4	18	80	0	50	18	20	25	34	1.96
6926284--6926399	59	2.0	59	86	3	162	37	12	14	34	1.85
6930697--6930773	2	41.0	2	75	12	74	55	0	44	0	0.99
6932305--6932349	20	2.2	20	96	0	81	42	0	11	46	1.39
6935006--6935061	22	2.5	22	82	5	69	51	17	1	28	1.56
6935107--6935170	20	3.3	20	72	16	62	50	20	3	26	1.63
6939760--6939834	21	3.4	21	66	28	57	37	16	14	32	1.89
6941246--6941281	18	2.0	18	94	0	63	44	5	13	36	1.68
6950775--6950815	21	2.0	20	85	4	55	34	17	19	29	1.94
6951243--6951442	64	3.1	64	78	2	195	23	14	26	36	1.93
6954703--6954749	22	2.1	21	84	7	58	46	12	6	34	1.67
6960246--6960281	2	18.0	2	100	0	72	50	0	0	50	1.00
6965750--6967202	723	2.0	722	98	0	2818	40	14	13	30	1.86
6968879--6969135	133	1.9	132	81	6	304	29	23	14	31	1.95
6970081--6970644	287	2.0	286	83	4	726	39	20	16	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6976401--6976448	20	2.2	22	79	20	57	58	6	12	22	1.57
6977598--6977633	18	2.0	18	100	0	72	33	16	11	38	1.84
6987164--6987211	20	2.4	20	75	6	53	10	31	6	52	1.60
6998289--6998369	24	3.5	24	77	8	80	23	22	27	27	1.99
6999604--6999651	2	24.0	2	100	0	96	50	0	0	50	1.00
6999704--6999753	2	25.0	2	95	0	91	52	0	0	48	1.00
7000824--7001157	68	4.9	68	81	2	341	35	18	9	36	1.83
7000852--7001157	135	2.3	136	82	1	355	34	18	9	37	1.84
7012236--7012278	15	2.6	17	75	14	54	44	9	0	46	1.35
7017649--7017695	2	23.5	2	95	0	85	51	2	0	46	1.13
7019411--7019460	21	2.3	21	77	12	57	30	4	18	48	1.66
7019542--7019616	21	3.5	21	85	10	107	24	5	20	50	1.68
7019650--7019747	21	4.8	21	81	12	98	30	4	18	46	1.67
7019888--7019961	20	4.0	20	68	22	63	39	14	13	32	1.86
7019892--7019957	34	1.9	34	87	6	98	37	15	15	31	1.88
7020361--7020439	36	2.3	34	87	8	108	29	11	26	32	1.91
7020614--7020643	15	1.9	16	93	6	53	13	6	10	70	1.34
7027042--7027103	21	3.0	21	97	0	115	19	12	22	45	1.84
7027199--7027274	21	3.6	21	85	3	98	25	2	23	48	1.64
7027331--7027413	21	4.0	21	77	4	78	30	6	16	46	1.71
7027323--7027417	21	4.5	21	76	9	77	32	6	15	45	1.72
7031849--7031907	20	3.0	20	87	0	91	38	13	13	33	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7033007--7033174	84	2.0	83	98	1	327	23	14	26	35	1.93
7034115--7034155	20	2.0	20	100	0	82	19	9	31	39	1.84
7036558--7036599	21	2.0	21	90	0	66	21	26	0	52	1.47
7037299--7037325	2	13.5	2	100	0	54	48	0	0	51	1.00
7038732--7038865	70	1.9	70	86	3	189	27	15	21	35	1.94
7038798--7038868	32	2.2	32	82	0	79	28	15	22	33	1.95
7043036--7043132	37	2.6	37	78	1	104	23	32	17	25	1.96
7043242--7043321	40	2.0	40	100	0	160	40	17	15	27	1.89
7043284--7043559	73	3.8	73	82	6	301	31	22	9	35	1.87
7043315--7043559	73	3.4	72	84	4	305	30	22	10	36	1.88
7046037--7046089	21	2.6	21	84	3	63	41	15	18	24	1.89
7048900--7049173	61	4.5	61	93	0	458	23	18	30	26	1.98
7054568--7054822	139	1.8	139	92	0	429	22	31	18	27	1.97
7067826--7067851	13	2.0	13	100	0	52	46	0	7	46	1.31
7069246--7069286	15	2.7	16	92	7	68	31	4	19	43	1.72
7074687--7074711	13	1.9	13	100	0	50	44	0	8	48	1.32
7079832--7080013	91	2.0	92	93	3	314	40	12	7	39	1.72
7083441--7083523	29	2.8	29	72	1	76	33	13	13	39	1.83
7083444--7083885	81	5.4	82	76	9	368	32	13	13	40	1.83
7084809--7084895	29	3.0	29	84	0	93	48	8	25	18	1.75
7085348--7085382	15	2.3	15	90	0	52	37	22	17	22	1.94
7086279--7086325	16	3.0	16	71	6	51	27	4	0	68	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7103289--7103582	145	2.0	145	90	0	462	44	11	11	32	1.76
7108532--7108593	26	2.3	28	77	5	74	46	1	1	50	1.20
7109189--7109237	10	5.1	10	78	14	50	61	0	0	38	0.96
7116145--7116175	11	2.8	11	100	0	62	51	0	0	48	1.00
7116745--7116782	15	2.6	14	87	4	58	76	0	0	23	0.79
7116751--7116797	14	3.5	13	83	16	60	70	0	2	27	0.99
7116838--7116934	41	2.6	37	83	11	117	67	0	4	28	1.09
7116838--7116936	35	2.6	38	85	9	123	66	0	4	29	1.10
7116842--7116963	35	3.2	38	77	12	115	62	0	6	30	1.26
7116963--7117165	101	2.0	101	97	0	379	51	8	7	32	1.61
7127894--7127936	15	2.9	15	80	10	52	37	4	25	32	1.77
7131718--7131802	6	14.2	6	82	0	62	38	8	2	50	1.45
7131720--7131804	32	2.7	32	90	0	134	37	8	2	51	1.45
7131969--7132100	2	64.0	2	79	5	138	43	6	3	46	1.45
7131982--7132104	27	4.9	27	87	11	181	41	6	4	47	1.48
7132264--7132294	2	15.5	2	100	0	62	48	0	0	51	1.00
7134357--7134426	34	2.1	33	86	5	97	18	7	25	48	1.73
7134603--7134695	34	2.7	34	79	1	96	21	8	20	49	1.75
7139688--7139782	43	2.2	43	90	0	145	26	11	34	27	1.91
7141469--7141537	29	2.3	30	82	2	68	55	7	11	26	1.61
7141480--7141537	29	2.0	29	89	3	89	53	6	8	31	1.58
7144894--7145016	42	2.9	42	90	0	201	21	21	33	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7145251--7145312	26	2.4	26	94	0	106	24	3	40	32	1.71
7152509--7152546	2	19.0	2	94	0	67	47	0	0	52	1.00
7152663--7152765	38	2.7	38	92	3	170	26	18	34	20	1.95
7171168--7171232	34	1.9	34	96	0	121	20	15	10	53	1.71
7173827--7173999	39	4.4	39	86	1	204	26	34	12	26	1.92
7189353--7189415	33	1.9	33	83	6	83	39	4	15	39	1.69
7193272--7193308	3	12.3	3	94	0	65	29	0	2	67	1.04
7195429--7195467	3	13.3	3	94	5	71	30	0	0	69	0.89
7199471--7199522	20	2.6	20	75	6	52	78	13	5	1	1.01
7201850--7201874	13	1.9	13	100	0	50	16	36	0	48	1.46
7202907--7202984	31	2.5	31	91	0	120	24	11	14	50	1.75
7202902--7203021	62	1.9	62	81	6	145	26	12	13	47	1.78
7203794--7204178	208	1.9	205	84	5	519	44	9	11	35	1.73
7206770--7206845	35	2.1	36	85	2	100	27	9	26	36	1.87
7209477--7209527	23	2.2	23	92	0	84	21	29	17	31	1.96
7226928--7226975	2	24.0	2	100	0	96	50	0	0	50	1.00
7240159--7240202	20	2.2	20	88	4	63	22	0	13	63	1.29
7246946--7246989	2	22.0	2	100	0	88	50	0	0	50	1.00
7252735--7252768	18	1.9	18	94	5	61	32	5	17	44	1.73
7261233--7261281	22	2.2	22	100	0	98	32	26	8	32	1.86
7268900--7268948	2	24.0	2	89	4	71	51	4	0	44	1.20
7268993--7269119	42	3.0	41	88	3	182	26	36	18	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7269012--7269141	42	3.1	42	93	0	206	25	33	20	20	1.97
7270209--7270245	18	2.1	18	89	0	56	0	37	0	62	0.96
7275635--7275777	37	4.0	37	79	13	181	31	9	34	23	1.88
7275833--7275868	2	18.0	2	100	0	72	50	0	0	50	1.00
7275932--7275978	23	2.0	23	84	8	60	36	12	14	36	1.85
7284571--7284696	42	3.0	42	88	2	173	23	22	31	23	1.98
7290104--7290140	19	1.9	19	94	0	65	18	35	27	18	1.95
7291197--7291235	14	2.8	14	84	0	51	51	0	7	41	1.31
7293356--7293832	241	2.0	247	85	3	653	38	9	12	39	1.76
7298885--7298937	26	2.1	25	86	10	72	37	18	1	41	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91