genome.fa.s3.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  32  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11194477--11194516	15	2.7	15	88	0	53	30	2	10	57	1.45
11196877--11196935	28	2.1	28	84	6	75	32	22	22	23	1.98
11203979--11204085	31	3.5	31	82	0	133	22	31	17	28	1.97
11204214--11204548	68	4.9	68	86	1	411	34	19	10	35	1.86
11205747--11205778	16	2.0	16	93	0	55	65	18	3	12	1.38
11207178--11207332	55	2.9	54	82	10	194	27	38	14	19	1.91
11207249--11207369	49	2.5	49	94	0	206	26	39	14	19	1.90
11208137--11208174	19	2.0	19	100	0	76	26	0	31	42	1.56
11210371--11210416	21	2.2	21	88	3	67	41	6	0	52	1.27
11213977--11214032	25	2.1	27	83	6	71	23	3	12	60	1.47
11215927--11216106	71	2.5	72	83	5	206	40	23	18	17	1.91
11216278--11216327	21	2.4	21	93	0	82	28	24	24	24	2.00
11217012--11217038	14	1.9	14	100	0	54	59	11	0	29	1.32
11220507--11220578	22	3.2	22	76	3	81	40	18	8	33	1.80
11220545--11220655	35	3.2	35	84	5	138	45	13	6	35	1.69
11224202--11224247	20	2.3	20	88	7	67	28	4	19	47	1.68
11255711--11255760	19	2.6	19	100	0	100	28	28	6	38	1.80
11257950--11257989	20	2.0	20	90	0	62	67	10	0	22	1.20
11260217--11260276	23	2.6	23	89	0	84	26	1	38	33	1.67
11263053--11263301	35	7.1	35	82	3	261	36	6	12	44	1.68
11263053--11263301	107	2.4	106	82	3	308	36	6	12	44	1.68
11263835--11264118	144	2.0	144	94	1	498	29	14	16	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11265233--11265275	18	2.4	18	88	7	61	67	0	13	18	1.23
11265224--11265278	18	2.9	18	78	8	56	67	1	12	18	1.32
11266233--11266327	30	3.3	26	76	22	84	73	2	2	22	1.04
11266236--11266315	14	5.9	14	77	20	64	73	1	1	23	0.97
11266236--11266315	33	2.4	34	80	20	96	73	1	1	23	0.97
11278161--11278412	37	6.7	38	79	4	269	25	15	17	42	1.88
11278161--11278417	75	3.4	75	86	4	304	26	15	16	41	1.88
11278497--11278567	1	71.0	1	71	0	52	85	7	2	4	0.80
11278497--11278553	18	3.2	19	79	16	61	87	8	3	0	0.64
11278497--11278553	20	2.8	20	83	2	69	87	8	3	0	0.64
11278693--11278745	24	2.2	25	77	16	58	73	3	7	15	1.20
11279210--11279377	66	2.6	65	80	10	177	36	12	41	9	1.76
11279358--11279415	2	29.0	2	92	0	98	50	0	48	1	1.11
11279923--11279962	4	10.2	4	89	5	64	47	0	27	25	1.52
11280894--11280957	28	2.3	28	100	0	128	57	4	12	25	1.54
11281017--11281084	16	4.1	16	71	16	50	72	0	4	23	1.03
11281036--11281095	27	2.2	27	85	5	77	73	0	3	23	0.98
11281004--11281084	33	2.4	34	80	19	98	70	1	4	23	1.14
11285701--11285727	14	1.9	14	100	0	54	40	7	22	29	1.81
11287555--11287803	35	7.1	35	83	3	279	36	7	13	43	1.71
11287555--11287801	71	3.5	71	83	3	288	36	7	13	42	1.72
11287555--11287803	107	2.4	106	84	3	317	36	7	13	43	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11293181--11293278	38	2.6	36	90	7	128	28	6	35	29	1.81
11293192--11293278	38	2.3	38	96	4	158	31	5	32	31	1.81
11293431--11293477	24	2.0	23	87	4	67	38	10	12	38	1.78
11297614--11297761	42	3.5	42	77	5	147	25	20	29	24	1.99
11297817--11297856	2	20.0	2	89	0	62	50	2	2	45	1.28
11300528--11300709	73	2.5	72	80	8	183	22	18	17	42	1.89
11306717--11306758	18	2.3	19	80	12	52	30	23	16	28	1.96
11319498--11319542	22	2.0	22	95	0	81	37	15	22	24	1.93
11320397--11320429	15	2.3	15	89	5	50	57	6	12	24	1.57
11320890--11320945	22	2.5	22	91	0	85	25	25	23	26	2.00
11321105--11321157	27	2.0	27	85	10	74	43	20	0	35	1.52
11321209--11321344	43	3.2	43	84	2	175	21	34	18	25	1.96
11322947--11323020	37	2.0	37	86	0	103	22	27	25	24	2.00
11324194--11324317	43	2.9	44	81	6	137	20	37	17	24	1.94
11326504--11326546	21	2.0	21	86	0	59	20	20	20	37	1.95
11326898--11326937	20	2.0	20	100	0	80	25	50	5	20	1.68
11326935--11327101	42	4.0	42	92	1	237	22	32	20	24	1.97
11330164--11330254	39	2.3	39	87	7	123	64	10	18	5	1.44
11330485--11330575	39	2.3	39	86	5	121	65	10	17	5	1.42
11329951--11330574	321	1.9	320	99	0	1239	46	12	20	19	1.82
11342360--11342397	15	2.6	15	87	4	51	52	2	23	21	1.59
11343879--11343997	43	2.8	43	85	2	159	21	19	37	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11343889--11344010	43	2.8	42	82	4	145	22	17	39	20	1.92
11344366--11344442	39	2.0	39	89	0	118	20	20	22	36	1.95
11347076--11347147	33	2.2	33	97	0	135	23	23	30	22	1.99
11347693--11347810	42	2.8	42	84	2	148	21	31	20	27	1.98
11348555--11348579	3	8.3	3	100	0	50	68	0	32	0	0.90
11350115--11350161	2	23.5	2	86	0	67	46	2	2	48	1.25
11357615--11357639	13	1.9	13	100	0	50	48	0	0	52	1.00
11360614--11360668	23	2.4	23	93	0	92	40	1	21	36	1.64
11365564--11365609	24	1.9	24	86	8	67	32	0	17	50	1.47
11370385--11370428	22	2.0	22	100	0	88	13	9	31	45	1.75
11370440--11370565	66	1.9	67	88	1	191	29	13	24	32	1.93
11378197--11378226	10	3.0	10	95	0	51	0	26	0	73	0.84
11378191--11378224	15	2.4	14	90	5	50	0	29	0	70	0.87
11379480--11379654	42	4.5	37	73	17	126	19	11	40	29	1.86
11379442--11379663	77	2.9	77	84	7	281	19	10	41	28	1.85
11379742--11379809	2	34.5	2	85	8	95	47	2	0	50	1.16
11392842--11392940	42	2.4	42	87	0	135	20	33	25	21	1.97
11399897--11399978	42	2.0	42	95	0	146	21	36	19	21	1.95
11405607--11405647	21	2.1	19	86	9	55	60	9	0	29	1.28
11407275--11407375	32	3.1	32	72	8	103	39	23	12	23	1.90
11407240--11407375	67	2.0	67	90	2	211	36	26	12	24	1.91
11407233--11407370	35	4.0	35	71	9	97	34	26	12	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11407784--11407952	73	2.3	73	79	9	177	18	20	19	40	1.91
11409713--11409751	20	2.0	20	84	0	51	41	17	2	38	1.64
11414506--11414620	35	3.4	35	72	13	105	33	26	13	26	1.93
11414506--11414641	35	4.1	33	73	15	100	36	25	13	24	1.92
11414506--11414641	67	2.0	67	87	5	195	36	25	13	24	1.92
11414531--11414637	35	3.1	34	70	17	105	36	25	13	25	1.92
11415030--11415070	20	2.1	20	86	4	57	19	19	19	41	1.91
11415029--11415218	73	2.6	73	79	11	187	18	22	19	39	1.93
11427120--11427245	42	3.0	41	83	5	135	23	33	17	26	1.96
11432707--11432760	28	2.0	27	85	10	74	25	27	25	20	1.99
11434868--11434901	18	1.9	18	88	5	52	38	0	2	58	1.13
11437450--11437929	261	1.8	261	94	0	843	32	20	16	31	1.94
11456867--11456991	42	3.0	42	90	0	187	20	24	33	22	1.97
11458708--11459036	180	1.8	180	88	0	505	34	14	12	38	1.84
11460143--11460391	35	7.0	35	83	2	264	42	12	7	38	1.71
11460164--11460391	107	2.2	105	85	1	294	43	11	7	37	1.69
11461711--11461870	73	2.2	73	84	2	196	21	15	21	41	1.89
11461728--11461891	73	2.2	73	82	2	195	21	15	21	41	1.90
11463980--11464083	38	2.7	39	80	5	113	26	42	11	19	1.85
11467231--11467293	31	2.0	31	100	0	126	34	9	25	30	1.88
11467683--11467792	37	3.0	37	82	0	121	27	10	35	26	1.90
11475682--11475723	2	21.0	2	95	0	75	50	2	0	47	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11481326--11481396	35	2.0	35	88	0	106	33	28	11	26	1.91
11484137--11484240	38	2.7	39	80	7	122	23	38	17	21	1.93
11484137--11484240	19	5.4	19	66	8	57	23	38	17	21	1.93
11485588--11485681	43	2.2	41	82	10	118	25	31	15	26	1.96
11486770--11486966	73	2.7	72	79	9	204	25	18	16	39	1.91
11491607--11491653	24	1.9	25	83	12	62	34	25	12	27	1.92
11496423--11496495	35	2.1	35	84	0	92	26	9	31	32	1.88
11496742--11496791	22	2.3	21	83	10	57	38	10	10	42	1.72
11501621--11501657	2	18.5	2	100	0	74	51	0	0	48	1.00
11501722--11501822	36	2.8	36	92	0	157	23	41	16	17	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91