genome.fa.s3.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  85  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32448478--32448674	104	1.9	104	87	0	286	33	8	10	47	1.68
32461249--32461320	29	2.4	31	75	6	78	41	5	0	52	1.24
32461815--32461880	27	2.2	28	80	20	73	56	0	0	43	0.99
32461804--32461891	30	2.9	29	76	14	72	56	0	0	43	0.99
32468850--32468974	62	2.0	62	100	0	250	32	16	12	39	1.86
32475082--32475127	13	3.5	13	79	8	58	45	2	0	52	1.13
32476949--32476974	13	2.0	13	100	0	52	38	0	0	61	0.96
32476951--32476981	15	2.0	16	93	6	55	38	3	0	58	1.15
32477050--32477094	23	2.0	22	86	4	63	46	2	2	48	1.26
32477075--32477146	23	3.1	23	73	15	67	44	0	1	54	1.08
32477623--32477667	2	22.0	2	90	4	72	48	0	4	46	1.22
32480071--32480100	15	2.0	15	93	0	51	70	0	0	30	0.88
32490885--32490919	15	2.4	14	86	9	52	71	5	0	22	1.07
32491531--32491574	23	1.9	23	86	9	63	70	9	2	18	1.24
32491530--32491580	22	2.2	24	79	6	61	68	13	1	15	1.30
32500020--32500049	16	1.9	16	93	6	53	30	0	6	63	1.20
32501545--32501596	2	26.0	2	83	14	63	3	44	0	50	1.20
32508967--32509017	20	2.6	19	76	11	50	60	0	1	37	1.08
32514110--32514380	146	1.9	144	94	1	479	31	12	16	39	1.86
32563290--32563347	24	2.4	24	97	0	107	39	25	17	17	1.91
32563334--32563378	21	2.1	21	91	0	72	20	15	31	33	1.93
32563359--32563478	45	2.7	45	78	10	129	34	16	19	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32563449--32563500	21	2.5	21	90	0	77	30	19	17	32	1.95
32563485--32563547	30	2.1	30	87	0	90	36	14	11	38	1.81
32566452--32566506	22	2.5	22	81	3	56	67	3	3	25	1.23
32566522--32566580	2	30.0	2	77	16	61	44	5	1	49	1.34
32566587--32566850	132	2.0	131	99	0	519	44	13	16	25	1.84
32567666--32567749	42	2.0	43	92	2	143	21	19	9	50	1.75
32577126--32577206	39	2.1	39	95	0	144	27	13	14	44	1.83
32580931--32580993	28	2.3	27	81	10	67	65	1	0	33	1.03
32581707--32581750	1	44.0	1	100	0	88	100	0	0	0	0.00
32583694--32583738	20	2.2	21	92	4	74	20	2	6	71	1.20
32586434--32586463	15	2.0	15	93	0	51	50	20	0	30	1.49
32586589--32586621	17	1.9	17	93	0	57	9	6	3	81	0.95
32587108--32587142	18	1.9	18	88	0	52	54	0	5	40	1.24
32596311--32596367	24	2.4	24	88	5	80	17	26	35	21	1.95
32597234--32597387	78	2.0	78	94	2	274	24	12	22	40	1.88
32598367--32598547	44	4.1	44	89	0	281	28	19	20	32	1.97
32610406--32610480	21	3.5	20	85	12	89	24	16	24	36	1.94
32610428--32610480	21	2.5	21	96	0	97	22	15	24	37	1.92
32610453--32610653	73	2.7	73	81	2	224	27	13	22	36	1.92
32610474--32610653	26	7.3	26	69	11	126	28	13	21	36	1.91
32610559--32610651	48	1.9	49	84	2	125	29	11	23	35	1.90
32610665--32610721	21	2.6	22	83	5	71	49	22	5	22	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32611372--32611409	19	2.0	20	89	5	60	68	2	0	28	1.03
32611388--32611444	29	2.0	29	82	0	69	47	1	7	43	1.40
32613506--32613579	23	3.3	22	72	23	73	51	2	2	43	1.30
32613506--32613619	23	5.1	22	67	19	67	48	1	5	44	1.35
32621482--32621563	42	2.0	42	92	0	137	31	12	9	46	1.74
32622239--32622329	27	3.4	27	80	6	94	34	19	21	24	1.97
32622305--32622422	32	3.7	31	70	13	78	26	18	22	33	1.97
32646464--32646496	3	11.0	3	100	0	66	66	0	0	33	0.92
32651919--32651949	16	1.9	16	93	0	53	25	25	3	45	1.69
32660192--32660309	15	7.9	15	71	14	66	44	1	1	51	1.21
32661619--32661671	23	2.3	23	83	6	63	54	0	41	3	1.18
32693165--32693193	7	4.1	7	100	0	58	27	0	0	72	0.85
32695475--32695629	58	2.7	58	82	2	186	41	16	14	27	1.87
32695710--32695801	47	2.0	47	84	4	123	36	15	14	33	1.87
32695764--32696118	51	6.8	51	77	6	287	39	18	13	28	1.89
32695780--32696050	107	2.6	102	76	8	240	39	19	12	28	1.88
32695896--32696122	107	2.2	102	78	7	240	37	18	13	30	1.90
32695754--32696109	158	2.3	158	94	0	622	38	18	13	29	1.89
32695710--32696140	51	8.3	51	73	10	259	38	18	13	30	1.89
32695754--32696195	158	2.8	154	87	3	530	38	17	12	30	1.88
32699369--32699398	7	4.3	7	91	0	51	26	16	30	26	1.97
32702280--32702304	5	5.0	5	100	0	50	0	20	0	80	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32705316--32705415	50	2.0	50	92	0	164	19	14	23	44	1.86
32735992--32736018	2	13.5	2	100	0	54	48	0	0	51	1.00
32749576--32749607	13	2.4	13	94	5	55	65	9	6	18	1.42
32750127--32750188	28	2.2	28	82	5	81	51	1	0	46	1.10
32750823--32750874	14	3.5	14	77	12	50	25	3	0	71	1.03
32766798--32766833	2	18.5	2	91	5	56	0	52	0	47	1.00
32768488--32768534	17	2.9	17	76	17	55	51	0	6	42	1.27
32789974--32790031	30	2.0	29	86	10	82	32	1	1	63	1.14
32790013--32790053	15	2.6	16	88	3	57	46	0	0	53	1.00
32790032--32790081	23	2.1	25	88	7	77	46	4	0	50	1.20
32799050--32799109	29	2.0	31	83	6	79	53	0	0	46	1.00
32799056--32799102	22	2.2	20	81	7	58	53	0	0	46	1.00
32799742--32799803	12	5.3	12	68	27	53	61	1	0	37	1.06
32800630--32800719	20	4.7	20	68	15	64	57	2	0	40	1.11
32801085--32801173	45	2.0	45	81	0	106	32	17	19	30	1.95
32801171--32801245	24	3.1	24	94	0	123	37	21	21	20	1.95
32801252--32801343	29	3.2	29	83	4	107	36	10	11	40	1.77
32803733--32803792	28	2.2	27	87	3	84	13	18	10	58	1.62
32807547--32807598	22	2.4	22	83	3	70	36	3	9	50	1.54
32807705--32807828	23	5.5	22	75	4	95	38	26	9	25	1.86
32807704--32807828	45	2.8	45	83	1	142	39	26	9	24	1.86
32807795--32807877	21	3.9	21	80	9	78	40	25	13	20	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32808041--32808078	19	2.0	20	89	5	60	50	21	5	23	1.69
32808004--32808116	60	1.9	60	83	3	147	43	19	5	31	1.73
32808277--32808349	3	23.7	3	88	5	110	63	0	2	34	1.09
32809397--32809446	2	25.0	2	95	0	82	46	0	4	50	1.20
32809538--32809568	2	16.0	2	93	6	55	48	0	0	51	1.00
32809541--32809566	13	2.0	13	100	0	52	46	0	0	53	1.00
32809539--32809568	15	2.0	15	100	0	60	46	0	0	53	1.00
32809614--32809983	190	2.0	189	98	0	704	42	9	16	31	1.79
32810018--32810071	17	3.1	17	80	17	65	75	0	1	22	0.89
32810020--32810072	20	2.6	22	80	16	62	73	0	3	22	0.99
32812167--32812424	120	2.1	121	82	3	315	42	14	15	27	1.85
32812346--32812492	51	2.9	51	82	2	143	43	14	14	27	1.84
32818077--32818188	56	2.0	56	96	0	206	31	38	8	21	1.84
32820849--32820884	14	2.6	14	86	0	54	61	0	2	36	1.11
32823422--32823458	2	18.5	2	88	0	56	45	0	5	48	1.25
32823422--32823458	10	3.7	10	96	0	65	45	0	5	48	1.25
32825090--32825140	12	4.5	12	78	14	63	11	5	66	15	1.41
32825109--32825149	6	6.8	6	88	0	64	12	2	68	17	1.31
32825097--32825149	24	2.2	24	89	0	79	11	3	67	16	1.35
32827274--32827524	132	1.9	134	91	4	416	35	19	13	31	1.91
32828369--32828414	18	2.4	20	75	17	53	50	0	4	45	1.21
32829451--32829493	21	2.0	21	90	0	68	27	4	51	16	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32833088--32833115	14	2.0	14	100	0	56	42	7	7	42	1.59
32836766--32836935	74	2.3	74	89	5	281	27	18	18	36	1.94
32840486--32840563	32	2.4	32	95	0	138	34	11	16	37	1.85
32862287--32862351	24	2.6	25	76	16	71	35	1	0	63	1.04
32868075--32868120	2	23.5	2	87	12	69	50	2	0	47	1.13
32868075--32868120	23	2.0	22	91	4	74	50	2	0	47	1.13
32879965--32880024	30	2.0	30	96	0	111	38	6	20	35	1.79
32882487--32882565	32	2.5	30	75	20	72	58	2	10	29	1.44
32896677--32896707	11	2.7	12	95	5	55	19	29	0	51	1.47
32929592--32929621	6	5.0	6	91	0	51	13	33	0	53	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91