genome.fa.s3.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  35  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12113853--12118364	341	13.2	338	77	6	3494	38	13	13	34	1.85
12113845--12118364	171	26.4	170	77	6	3686	38	13	13	34	1.85
12122626--12122654	14	2.0	15	93	6	51	34	13	27	24	1.93
12124076--12124100	13	1.9	13	100	0	50	48	8	0	44	1.32
12125587--12125624	19	2.0	19	89	0	58	42	26	0	31	1.56
12127144--12127187	2	22.5	2	95	4	81	52	0	0	47	1.00
12127242--12127284	2	21.5	2	100	0	86	48	0	0	51	1.00
12127767--12132028	171	25.0	170	77	6	3376	33	14	14	37	1.86
12127767--12132027	511	8.3	510	77	7	3568	33	14	14	37	1.86
12132995--12133065	35	2.0	35	88	0	106	25	35	9	29	1.88
12137813--12137880	30	2.3	31	82	12	88	27	32	0	39	1.57
12137831--12137888	30	1.9	30	82	6	73	27	31	0	41	1.56
12138170--12138209	19	2.2	19	90	4	64	47	2	2	47	1.29
12138481--12140712	171	13.2	165	75	9	1210	33	14	14	37	1.86
12138541--12140712	342	6.4	340	77	6	1630	33	14	14	37	1.86
12138543--12140712	847	2.6	840	77	8	2046	33	14	14	37	1.86
12141993--12142065	35	2.1	35	92	0	119	32	8	31	27	1.86
12142094--12142126	2	16.5	2	100	0	66	48	0	0	51	1.00
12146548--12146611	28	2.3	29	83	5	78	37	9	14	39	1.78
12150939--12151096	54	2.9	54	89	0	226	24	41	12	22	1.88
12150996--12151077	25	3.1	25	65	19	67	20	41	13	24	1.88
12151072--12151170	38	2.6	38	83	6	110	24	40	14	21	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12167015--12167059	20	2.2	21	84	11	58	57	6	20	15	1.60
12167013--12167060	21	2.3	20	76	16	53	58	6	20	14	1.58
12170340--12173613	171	19.2	170	74	8	1471	37	14	14	33	1.86
12170340--12173669	342	9.8	338	77	6	2615	37	14	14	34	1.86
12170340--12173624	512	6.4	514	76	7	2483	37	14	14	34	1.86
12175186--12175293	35	3.1	35	91	0	162	26	9	35	28	1.87
12176059--12176661	171	3.5	171	80	2	563	35	15	15	33	1.89
12176720--12178366	171	9.7	171	76	6	1317	38	14	13	33	1.85
12176170--12177269	551	2.0	549	82	2	1314	37	14	14	33	1.87
12176038--12177382	722	1.9	719	85	2	1876	37	14	14	33	1.87
12176767--12178870	341	6.1	340	75	8	1404	38	14	13	33	1.85
12178329--12178395	24	2.9	22	89	6	82	38	17	19	23	1.93
12178339--12178395	24	2.4	24	96	0	105	40	17	21	21	1.92
12178364--12178761	169	2.3	168	79	5	408	38	13	13	34	1.83
12186280--12186423	40	3.6	39	87	7	184	20	35	20	23	1.96
12188436--12188608	39	4.4	39	89	0	256	25	34	12	27	1.92
12189492--12189568	5	15.4	5	83	4	75	72	0	23	3	1.01
12189494--12189567	20	3.7	20	83	3	87	71	0	24	4	1.03
12189495--12189569	25	3.0	25	96	3	134	72	0	22	5	1.05
12193836--12193909	35	2.1	35	82	5	87	29	35	10	24	1.89
12197773--12197875	38	2.6	40	85	8	133	21	15	39	23	1.91
12199159--12199274	42	2.7	42	86	6	171	25	35	17	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12201898--12202032	43	3.2	43	92	1	209	23	19	36	20	1.95
12205688--12205806	43	2.8	43	84	0	148	23	19	35	21	1.96
12206175--12206268	39	2.4	39	83	3	118	23	19	24	32	1.97
12207995--12208068	34	2.2	34	80	4	87	29	8	27	35	1.85
12208296--12208355	25	2.4	25	85	0	84	48	11	23	16	1.79
12211393--12211432	19	2.1	19	95	0	71	17	27	27	27	1.98
12211886--12211995	42	2.6	42	92	1	175	23	38	15	22	1.92
12211886--12212019	42	3.2	42	86	7	166	23	35	17	23	1.95
12213976--12214024	22	2.2	21	86	13	64	40	12	10	36	1.77
12218168--12218257	42	2.1	42	89	0	135	21	31	21	26	1.98
12224546--12224587	20	2.0	21	82	13	52	66	0	30	2	1.04
12225728--12225860	39	3.5	39	85	3	146	25	15	34	24	1.94
12226617--12226733	57	2.1	57	88	3	173	39	17	8	35	1.80
12230176--12230294	43	2.8	43	85	0	148	23	19	34	22	1.96
12232856--12232940	43	2.0	43	92	0	143	21	17	36	24	1.94
12258042--12258158	47	2.5	47	97	0	216	34	12	19	33	1.90
12259525--12259557	17	1.9	17	88	11	50	39	3	15	42	1.62
12262130--12262176	2	23.5	2	100	0	94	51	0	0	48	1.00
12262204--12262296	42	2.2	43	88	1	134	26	37	13	21	1.91
12271308--12271527	35	6.3	35	79	3	221	44	11	5	37	1.66
12271310--12271527	71	3.1	69	79	7	237	44	11	5	38	1.66
12271296--12271499	106	1.9	105	86	1	291	42	11	6	38	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12278248--12278506	34	7.2	34	69	17	173	21	13	35	29	1.92
12278255--12278512	36	7.0	39	65	21	162	20	14	35	29	1.92
12278222--12278541	73	4.4	73	92	0	523	21	14	35	28	1.93
12279625--12279678	28	2.0	27	85	3	72	33	20	20	25	1.97
12284164--12284307	29	5.0	28	80	10	155	40	10	13	36	1.78
12284167--12284328	59	2.7	60	81	10	174	38	9	12	39	1.76
12284202--12284328	60	2.1	59	83	9	152	39	11	11	38	1.76
12285560--12285610	18	2.9	18	82	5	61	41	0	1	56	1.10
12285790--12285832	15	2.8	16	82	10	54	39	0	2	58	1.11
12288139--12288272	35	4.0	34	78	13	134	23	11	29	34	1.91
12288140--12288329	67	2.8	67	86	1	256	23	12	28	35	1.91
12309038--12309147	35	3.2	34	75	10	109	29	12	27	30	1.93
12309015--12309144	67	1.9	67	87	3	190	24	12	30	33	1.92
12309053--12309147	32	2.8	33	78	9	104	27	13	28	30	1.94
12309053--12309204	67	2.3	67	85	0	196	26	13	25	34	1.93
12309922--12309950	2	14.5	2	100	0	58	51	0	0	48	1.00
12310021--12310088	35	1.9	35	85	5	93	29	38	8	23	1.85
12310733--12310894	42	3.8	42	80	2	164	28	19	30	21	1.97
12316296--12316368	35	2.1	35	87	5	103	27	36	12	23	1.90
12325312--12325476	29	5.5	30	75	11	133	36	9	11	42	1.73
12325628--12325661	17	2.0	17	88	11	52	38	0	14	47	1.45
12327864--12327903	21	1.9	21	89	0	62	47	22	2	27	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12333895--12334107	34	5.9	34	68	18	110	22	14	35	27	1.93
12333896--12334138	73	3.3	73	87	2	362	22	14	35	27	1.93
12334117--12334207	35	2.6	36	79	11	107	21	14	30	32	1.93
12337562--12337596	18	1.9	18	88	11	54	11	11	14	62	1.54
12343395--12343443	23	2.1	23	84	0	62	28	10	34	26	1.89
12365046--12365165	42	2.9	42	87	0	177	25	34	19	21	1.96
12367950--12368011	26	2.4	26	91	0	97	32	38	3	25	1.72
12368246--12368327	42	2.0	42	95	0	146	21	35	21	20	1.96
12375492--12375553	26	2.4	26	94	0	106	32	40	3	24	1.71
12375788--12375868	42	1.9	42	94	0	144	22	34	22	20	1.97
12379773--12379808	2	18.0	2	94	0	63	50	0	2	47	1.15
12387530--12387628	43	2.3	43	84	3	119	25	20	35	19	1.95
12389378--12389412	2	17.5	2	100	0	70	51	0	0	48	1.00
12391964--12392012	21	2.4	22	80	13	59	42	16	16	24	1.87
12392314--12392362	20	2.3	22	82	10	66	28	16	8	46	1.75
12402107--12402156	25	2.0	25	84	0	64	30	26	16	28	1.96
12403518--12403588	4	17.8	4	81	15	69	0	30	0	69	0.89
12403524--12403608	14	6.1	14	70	21	54	0	31	0	68	0.90
12403523--12403602	18	4.3	18	78	12	81	0	32	0	67	0.91
12409713--12409831	43	2.8	43	89	2	177	21	21	37	19	1.94
12409723--12409844	43	2.8	43	88	2	174	22	18	39	18	1.92
12409830--12409892	20	3.2	20	90	2	101	25	3	41	30	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12417590--12417717	43	3.0	43	87	2	186	25	20	33	20	1.97
12417738--12417800	20	3.2	20	86	2	92	26	3	39	30	1.72
12428456--12428537	35	2.3	35	91	2	128	19	6	34	40	1.76
12428568--12428657	34	2.6	34	83	0	117	31	13	23	32	1.93
12428825--12428867	5	8.8	5	90	10	63	79	0	20	0	0.74
12457691--12457724	2	17.5	2	93	6	61	50	0	0	50	1.00
12458183--12458248	31	2.1	33	82	5	82	18	22	9	50	1.75
12458211--12458299	25	3.4	25	84	4	115	16	22	11	49	1.77
12458344--12458391	22	2.2	22	92	0	78	10	45	8	35	1.68
12458504--12458589	34	2.5	34	90	1	127	34	23	11	30	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91