genome.fa.s3.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  72  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26078349--26078455	50	2.3	45	79	17	135	35	17	18	28	1.94
26078431--26078476	21	2.2	21	92	0	74	21	17	26	34	1.95
26078452--26078584	45	3.0	45	82	0	149	35	15	18	31	1.91
26078568--26078636	24	2.6	28	75	20	83	49	20	10	20	1.77
26078660--26078714	12	4.7	12	77	4	67	49	16	10	23	1.77
26078672--26078753	23	3.5	23	89	1	119	45	17	13	24	1.84
26078672--26078769	23	4.2	23	89	1	106	41	19	15	23	1.89
26078776--26078859	29	2.7	32	76	10	102	44	9	8	38	1.67
26078776--26078872	29	3.3	29	81	9	101	41	10	8	40	1.69
26078856--26078912	25	2.2	26	82	17	66	43	12	5	38	1.65
26086755--26086800	20	2.3	20	96	0	83	45	21	4	28	1.71
26091746--26091789	16	2.9	15	83	6	61	50	0	0	50	1.00
26091713--26091794	22	3.7	21	70	13	58	51	2	0	46	1.14
26092288--26092319	16	2.1	16	94	5	57	65	0	0	34	0.93
26093121--26093169	13	3.6	13	84	13	55	83	2	4	10	0.85
26093135--26093169	18	1.9	18	88	11	54	85	2	2	8	0.79
26093133--26093174	20	2.1	20	86	0	57	85	4	2	7	0.80
26096449--26096490	15	2.9	15	79	13	52	45	0	0	54	0.99
26100062--26100097	3	12.0	3	93	0	63	33	2	0	63	1.08
26101112--26101153	2	22.0	2	85	9	61	47	0	2	50	1.14
26101328--26101363	2	18.0	2	100	0	72	50	0	0	50	1.00
26104729--26104791	29	2.2	29	85	5	83	60	0	4	34	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26104752--26104814	23	2.7	23	90	2	90	63	0	3	33	1.10
26104729--26104798	30	2.3	30	83	9	81	58	0	4	37	1.18
26105606--26105659	24	2.2	25	83	3	65	74	0	7	18	1.05
26108447--26108484	18	2.1	19	85	5	51	57	0	0	42	0.98
26114882--26114911	4	7.5	4	100	0	60	23	0	0	76	0.78
26114978--26115007	2	15.0	2	100	0	60	50	0	0	50	1.00
26136896--26136939	10	4.5	10	80	5	54	50	0	0	50	1.00
26136893--26136931	19	2.1	19	90	0	60	53	0	0	46	1.00
26136930--26137032	30	3.5	30	76	5	102	36	1	4	56	1.32
26149148--26149193	22	2.0	22	84	12	58	69	6	17	6	1.32
26149845--26149882	18	2.0	20	90	10	62	50	0	0	50	1.00
26150738--26150775	16	2.3	17	90	4	60	47	5	2	44	1.39
26150738--26150775	17	2.2	17	90	0	58	47	5	2	44	1.39
26151701--26151779	23	3.3	23	79	8	70	41	0	3	54	1.18
26166891--26166934	14	2.9	16	80	13	56	9	9	18	63	1.49
26168528--26168597	33	2.1	33	82	10	81	57	1	8	32	1.38
26170581--26170631	21	2.4	21	80	6	59	23	1	11	62	1.39
26184533--26184572	21	1.9	21	89	0	62	27	10	15	47	1.77
26187524--26187562	19	2.0	20	85	10	53	58	15	10	15	1.62
26203371--26203543	20	8.6	20	69	9	93	21	4	23	50	1.66
26203409--26203565	42	3.9	41	79	9	151	22	3	22	50	1.65
26203732--26203795	20	3.2	20	79	0	83	23	6	15	54	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26204303--26204340	2	19.0	2	100	0	76	50	0	50	0	1.00
26212805--26212847	22	2.0	22	95	0	77	32	16	27	23	1.96
26212809--26212859	22	2.2	22	86	6	66	33	17	23	25	1.96
26216451--26216506	12	4.4	13	75	11	53	66	0	33	0	0.92
26219116--26219147	15	2.1	15	94	0	55	34	0	0	65	0.93
26224383--26224417	6	5.8	6	93	0	61	54	0	45	0	0.99
26224387--26224429	18	2.4	18	80	7	52	60	0	39	0	0.97
26225333--26225414	36	2.2	39	82	6	98	69	1	2	26	1.08
26225333--26225389	18	3.1	18	73	12	53	73	1	1	22	1.02
26239313--26239394	24	3.5	22	80	12	92	74	0	0	25	0.82
26239313--26239386	4	18.8	4	74	20	59	72	0	0	27	0.84
26254949--26254991	2	21.5	2	100	0	86	51	0	0	48	1.00
26257656--26257689	16	2.2	16	89	5	52	29	2	5	61	1.34
26260382--26260425	23	2.0	22	81	4	52	40	0	6	52	1.28
26260493--26260586	45	2.1	45	83	0	116	45	6	4	43	1.49
26261734--26261775	22	1.9	22	85	0	57	28	14	11	45	1.80
26261787--26261869	23	3.6	23	90	0	112	34	28	14	21	1.93
26261787--26261895	46	2.4	46	81	3	112	33	26	13	25	1.93
26261875--26262003	26	5.1	26	76	11	115	41	20	9	29	1.83
26261900--26262019	52	2.4	49	82	8	125	42	21	8	27	1.81
26269963--26270045	39	2.2	39	97	2	159	22	16	21	38	1.93
26273804--26274344	133	4.0	137	84	4	668	15	43	16	24	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26284580--26284721	74	1.9	75	84	7	191	33	21	10	33	1.88
26285397--26285473	28	2.6	29	80	12	95	45	0	2	51	1.14
26285382--26285452	36	2.0	36	89	10	110	46	0	1	52	1.09
26302858--26302962	2	53.0	2	86	5	133	48	3	0	45	1.27
26302858--26302962	23	4.6	23	83	1	140	48	3	0	45	1.27
26304111--26304162	21	2.5	21	83	0	68	42	0	1	55	1.10
26304984--26305028	15	2.8	16	83	13	56	37	4	8	48	1.55
26305932--26305957	6	4.3	6	100	0	52	84	0	15	0	0.62
26318550--26318593	17	2.5	18	85	3	63	56	2	0	40	1.11
26321755--26321780	11	2.4	11	100	0	52	38	23	7	30	1.83
26321930--26321963	13	2.5	14	90	4	52	29	2	17	50	1.61
26322362--26322398	19	2.1	19	85	10	51	64	0	2	32	1.07
26323157--26323191	18	1.9	18	94	0	61	54	0	0	45	0.99
26323260--26323298	15	2.6	16	84	12	55	43	7	0	48	1.31
26323265--26323309	15	3.1	14	81	12	54	44	6	2	46	1.42
26323929--26324289	90	4.0	89	84	3	422	21	35	18	23	1.96
26328299--26328324	2	13.0	2	100	0	52	0	50	0	50	1.00
26339147--26339208	30	2.1	30	87	6	90	37	3	1	58	1.24
26339405--26339479	28	2.7	28	83	4	98	58	0	1	40	1.06
26358322--26358382	22	2.8	22	80	11	72	52	3	0	44	1.17
26358367--26358409	15	2.9	15	79	3	52	55	0	2	41	1.12
26358346--26358391	22	2.1	22	83	0	56	58	2	0	39	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26358367--26358472	40	2.6	37	78	11	95	52	0	1	45	1.11
26358406--26358466	15	4.3	15	72	16	58	47	0	1	50	1.10
26368061--26368095	13	2.8	12	87	8	52	68	0	0	31	0.90
26368053--26368139	28	3.3	27	76	12	74	62	2	0	35	1.08
26370191--26370243	19	2.8	19	100	0	106	37	22	9	30	1.86
26375623--26375805	92	2.0	92	94	0	321	32	20	19	27	1.97
26387628--26387683	27	2.1	27	83	6	71	26	0	0	73	0.84
26392145--26392176	7	4.6	7	96	0	55	59	3	0	37	1.13
26394808--26394834	14	1.9	14	100	0	54	37	22	0	40	1.54
26396033--26396066	17	2.0	17	94	0	59	52	14	11	20	1.73
26398908--26398948	2	22.0	2	85	14	61	53	0	46	0	1.00
26406083--26406125	8	5.1	8	81	10	50	13	4	0	81	0.84
26406113--26406171	32	1.9	30	83	13	75	30	0	3	66	1.08
26406668--26406763	47	2.0	48	83	2	122	22	10	16	50	1.76
26409864--26409933	27	2.6	27	93	2	115	21	18	15	44	1.87
26415415--26415457	2	21.5	2	100	0	86	48	0	0	51	1.00
26415487--26415838	196	1.8	195	80	9	430	39	14	10	35	1.81
26416112--26416194	26	3.3	25	70	11	71	40	10	10	37	1.75
26429890--26429991	23	4.5	23	70	11	61	47	0	0	50	1.14
26429942--26429980	15	2.6	14	84	11	51	43	0	2	53	1.14
26433037--26433140	30	3.6	29	78	7	95	37	1	2	57	1.25
26441727--26441765	18	2.2	18	86	4	53	23	12	12	51	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26444143--26444175	13	2.4	14	95	5	59	0	12	0	87	0.53
26450997--26451025	8	3.6	8	100	0	58	37	0	10	51	1.36
26452900--26453002	51	2.0	51	98	0	197	45	10	19	24	1.82
26459936--26459985	25	2.0	25	100	0	100	44	4	16	36	1.66
26464031--26464169	68	2.0	68	97	0	260	43	14	21	20	1.87
26470065--26470100	7	5.1	7	96	0	54	36	0	27	36	1.57
26484137--26484171	13	2.7	13	83	16	54	0	31	2	65	1.07
26484137--26484171	6	5.5	6	90	6	52	0	31	2	65	1.07
26496271--26496321	6	8.8	6	97	2	88	64	0	0	35	0.94
26509642--26509778	70	2.0	70	97	0	256	33	17	10	38	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91