genome.fa.s3.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  36  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12458561--12458682	23	5.2	23	86	3	172	32	27	9	30	1.89
12458561--12458682	47	2.6	46	89	2	181	32	27	9	30	1.89
12458865--12458912	25	1.9	25	83	8	62	35	25	0	39	1.56
12463558--12463697	60	2.3	60	85	0	181	32	22	19	25	1.97
12463558--12463724	60	2.8	59	80	5	167	32	22	20	25	1.98
12464126--12464163	2	19.0	2	100	0	76	50	0	0	50	1.00
12464196--12464319	43	2.9	43	85	4	162	21	36	16	25	1.94
12468882--12468922	21	1.9	22	90	5	66	17	24	7	51	1.70
12473601--12473772	42	4.1	42	88	0	209	24	21	31	22	1.98
12473836--12473879	2	22.0	2	85	0	61	50	6	0	43	1.29
12475485--12475605	42	2.9	42	89	1	170	21	20	36	21	1.95
12479996--12480034	20	1.9	21	89	5	62	25	2	2	69	1.14
12486652--12486760	46	2.4	46	96	0	200	29	33	11	25	1.90
12486652--12486848	46	4.4	43	85	4	150	26	35	13	24	1.93
12486652--12486856	43	4.6	45	83	10	201	27	35	13	23	1.93
12486738--12486873	43	3.2	43	89	0	209	23	33	16	25	1.96
12486692--12486873	86	2.1	86	82	7	224	25	33	15	25	1.95
12487249--12487300	21	2.4	21	90	3	77	51	5	28	13	1.64
12492232--12492280	22	2.2	22	85	0	62	26	20	22	30	1.98
12492567--12492659	43	2.2	43	82	7	109	26	34	12	25	1.92
12498716--12498758	21	2.0	21	81	0	50	48	6	25	18	1.73
12500830--12500997	50	3.3	49	76	8	151	32	13	17	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12509257--12509307	19	2.7	19	79	11	59	11	33	5	49	1.64
12510105--12510186	43	1.9	43	87	0	119	26	17	34	21	1.95
12513888--12513922	17	2.1	17	100	0	70	5	11	17	65	1.43
12518161--12518224	27	2.4	26	80	12	69	29	32	17	20	1.95
12519608--12519666	4	15.2	4	79	13	54	0	28	0	71	0.87
12519599--12519688	28	3.1	29	87	7	105	0	32	0	67	0.91
12519599--12519666	36	1.9	35	88	8	102	0	30	0	69	0.89
12519630--12519677	14	3.4	14	75	11	53	0	35	0	64	0.94
12521692--12521741	24	2.1	24	92	0	82	30	26	6	38	1.80
12525536--12525638	52	2.0	52	96	0	188	32	32	13	22	1.93
12526123--12526156	17	2.0	17	88	0	50	55	32	0	11	1.36
12533211--12533313	35	2.9	36	84	12	124	29	33	15	21	1.94
12533288--12533399	52	2.2	52	93	0	197	29	31	17	21	1.96
12558946--12558985	2	20.0	2	84	0	53	42	2	5	50	1.37
12572074--12572112	11	3.8	11	83	16	57	69	7	23	0	1.14
12580106--12580144	11	3.8	11	83	16	57	69	7	23	0	1.14
12584982--12585074	43	2.2	43	90	0	141	23	16	35	24	1.95
12585025--12585129	54	1.9	54	94	0	183	23	16	32	27	1.96
12588347--12588448	35	2.9	35	94	0	168	26	36	10	26	1.89
12590192--12590232	21	1.9	22	95	5	75	53	7	21	17	1.67
12590191--12590238	21	2.2	21	85	3	69	60	6	18	14	1.55
12598381--12598418	20	1.9	20	88	0	58	15	7	13	63	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12599181--12599241	30	2.0	30	93	0	104	29	29	3	37	1.73
12599744--12599791	20	2.4	20	82	6	53	22	4	6	66	1.32
12602808--12602835	2	14.0	2	100	0	56	50	0	50	0	1.00
12606719--12607219	76	6.6	74	76	8	318	25	20	20	32	1.97
12606958--12607172	74	2.8	74	84	3	223	23	20	23	33	1.97
12606992--12607212	74	3.0	74	87	2	268	23	19	23	33	1.97
12611409--12611609	81	2.5	81	82	3	226	22	34	15	27	1.94
12614091--12614151	31	2.0	31	90	0	95	39	19	16	24	1.92
12614918--12615162	23	10.6	22	75	8	154	27	30	12	29	1.93
12615081--12615238	67	2.3	68	79	6	169	24	29	11	34	1.90
12614920--12615247	23	14.2	23	74	9	140	25	29	12	31	1.93
12615276--12615388	23	4.9	23	84	2	120	24	32	12	30	1.92
12616398--12616460	32	2.0	32	100	0	126	26	9	9	53	1.64
12626630--12626658	14	2.0	15	93	6	51	41	3	0	55	1.17
12629852--12629881	2	15.0	2	100	0	60	0	50	0	50	1.00
12641111--12641154	2	22.0	2	100	0	88	50	0	0	50	1.00
12641154--12641184	2	15.5	2	100	0	62	0	0	48	51	1.00
12641191--12641245	26	2.1	26	89	0	83	40	5	10	43	1.63
12641208--12641242	18	1.9	18	88	0	52	40	5	8	45	1.58
12654156--12654186	4	7.8	4	100	0	62	0	0	22	77	0.77
12655702--12655728	2	13.5	2	100	0	54	51	0	0	48	1.00
12661125--12661153	3	9.7	3	100	0	58	68	0	0	31	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12664115--12664140	7	3.7	7	100	0	52	57	0	0	42	0.98
12666052--12666077	2	13.0	2	100	0	52	50	0	50	0	1.00
12666136--12666161	2	13.0	2	100	0	52	50	0	50	0	1.00
12673929--12673953	13	1.9	13	100	0	50	48	8	0	44	1.32
12677255--12677380	42	3.0	42	82	2	146	22	29	23	25	1.99
12681356--12681458	38	2.6	40	84	3	138	21	15	38	24	1.92
12687605--12687643	2	19.5	2	100	0	78	51	48	0	0	1.00
12688104--12688143	20	2.0	21	85	5	55	42	5	35	17	1.71
12690353--12690519	77	2.1	81	83	8	218	41	7	13	37	1.73
12695490--12695623	43	3.1	42	77	6	126	22	29	17	29	1.97
12699441--12699510	35	2.0	34	83	2	86	30	27	14	28	1.95
12727967--12728058	35	2.6	36	79	6	98	33	21	11	32	1.90
12735136--12735312	39	4.6	39	75	7	132	27	38	12	20	1.89
12737271--12737330	27	2.2	27	82	5	68	31	11	21	35	1.90
12745640--12745683	22	2.0	22	82	8	54	54	9	18	18	1.69
12748575--12748622	20	2.6	18	78	15	53	0	27	0	72	0.84
12751512--12751559	2	24.0	2	100	0	96	50	0	0	50	1.00
12753744--12753813	28	2.6	28	86	6	101	24	14	28	32	1.94
12755921--12755989	34	2.0	34	94	5	122	39	14	14	30	1.86
12772986--12773103	35	3.4	35	65	3	94	22	8	35	33	1.84
12773344--12773394	4	13.2	4	80	15	54	82	0	17	0	0.67
12773343--12773394	19	2.7	19	85	8	70	82	0	17	0	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12773343--12773394	23	2.3	23	93	6	88	82	0	17	0	0.66
12784695--12784752	27	2.1	28	90	9	93	10	24	13	51	1.72
12784743--12784791	5	10.0	5	86	8	66	0	18	0	81	0.69
12785062--12785158	35	2.8	35	88	3	151	38	23	11	26	1.89
12788927--12788954	11	2.5	11	100	0	56	53	14	0	32	1.41
12791105--12791165	27	2.2	27	88	8	88	11	22	11	54	1.68
12791155--12791214	10	5.6	10	75	24	52	1	21	0	76	0.87
12791155--12791212	16	3.5	17	80	17	68	1	22	0	75	0.89
12791158--12791202	22	2.0	22	87	8	65	0	22	0	77	0.76
12791158--12791199	5	8.0	5	94	2	57	0	21	0	78	0.75
12791484--12791567	35	2.4	34	84	2	105	40	21	8	29	1.82
12793867--12794045	54	3.3	54	88	3	270	19	12	40	27	1.87
12796720--12796765	19	2.3	20	88	3	67	63	17	6	13	1.50
12799041--12799076	16	2.2	17	90	5	56	0	11	2	86	0.68
12800776--12800935	54	3.0	54	89	3	250	19	13	40	26	1.88
12800776--12800860	29	3.1	29	66	13	79	16	11	41	30	1.84
12801858--12802267	200	2.0	204	88	4	603	26	18	35	19	1.95
12818996--12819035	21	1.9	21	85	10	55	2	27	0	70	1.01
12818965--12819035	28	2.4	29	90	4	108	2	29	0	67	1.05
12824075--12824114	20	2.0	21	90	5	64	70	7	2	20	1.24
12827405--12827507	38	2.6	40	85	8	133	23	37	17	21	1.94
12831917--12831953	2	18.5	2	100	0	74	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12832933--12832971	20	2.0	20	84	0	51	0	28	2	69	1.02
12838487--12838593	37	2.9	37	97	0	196	28	11	36	23	1.89
12858637--12858671	18	1.9	18	88	11	54	2	20	2	74	1.08
12859506--12859736	37	6.4	37	66	22	107	22	14	33	29	1.93
12859472--12859705	73	3.2	73	90	2	348	23	14	33	28	1.94
12859506--12859736	34	6.4	37	68	18	128	22	14	33	29	1.93
12862264--12862367	43	2.4	43	80	3	111	27	18	33	20	1.96
12866146--12866183	19	2.0	19	89	0	58	28	2	28	39	1.70
12871680--12871717	19	2.0	19	94	0	67	44	26	0	28	1.54
12872854--12872899	19	2.4	20	82	10	60	54	0	2	43	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91