genome.fa.s3.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  34  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11810136--11810243	38	2.8	38	92	0	189	24	39	15	20	1.91
11810138--11810239	19	5.4	19	62	9	55	23	39	15	21	1.92
11810365--11810390	2	13.0	2	100	0	52	50	0	0	50	1.00
11812545--11812587	22	2.0	22	85	0	59	30	18	23	27	1.98
11812761--11812925	60	2.7	59	84	8	199	32	24	20	23	1.98
11815837--11815870	16	2.1	17	88	5	52	47	14	0	38	1.45
11819719--11819822	38	2.7	38	83	3	127	25	41	14	19	1.89
11822000--11822098	37	2.6	39	82	7	114	24	39	13	23	1.90
11825735--11825778	21	2.1	21	86	0	61	20	27	25	27	1.99
11839214--11839241	2	14.0	2	100	0	56	50	0	0	50	1.00
11839336--11839447	54	2.1	54	94	0	197	21	13	41	24	1.89
11840231--11840394	72	2.3	72	93	0	274	29	12	23	34	1.92
11842890--11842914	13	1.9	13	100	0	50	48	8	0	44	1.32
11844043--11844094	28	1.9	27	84	7	70	26	17	21	34	1.95
11844148--11844185	20	1.9	20	88	0	58	42	18	7	31	1.79
11848359--11848403	5	9.0	5	82	0	54	33	26	0	40	1.57
11848366--11848403	15	2.5	15	95	0	67	31	26	0	42	1.56
11848449--11848495	15	3.1	15	78	6	51	51	14	2	31	1.55
11850716--11850753	20	1.9	20	100	0	76	28	5	21	44	1.73
11850807--11850864	28	2.1	27	81	12	73	31	22	22	24	1.99
11851983--11852007	13	1.9	13	100	0	50	44	0	8	48	1.32
11852977--11853010	18	1.9	17	88	5	50	32	0	8	58	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11853408--11853445	15	2.5	15	91	0	58	28	2	15	52	1.56
11859567--11859615	15	3.3	15	82	0	62	46	18	0	34	1.49
11964168--11964192	2	12.5	2	100	0	50	52	0	0	48	1.00
11964405--11964496	34	2.7	34	93	3	150	20	14	30	34	1.92
11964811--11964853	5	8.6	5	94	0	77	79	0	20	0	0.74
11964885--11964945	25	2.5	24	87	12	88	50	9	22	16	1.74
11967839--11969494	171	9.7	168	76	6	1341	36	14	14	34	1.87
11967839--11969494	170	9.7	169	76	6	1338	36	14	14	34	1.87
11968331--11968369	20	2.1	19	90	9	62	41	10	12	35	1.77
11967839--11972032	341	12.4	337	75	7	2804	37	13	13	34	1.85
11968593--11969394	174	4.7	174	76	7	443	37	14	13	34	1.85
11969531--11969844	149	2.1	153	81	7	367	38	12	14	33	1.84
11969685--11972067	170	14.0	169	78	5	1954	38	12	13	35	1.83
11973069--11973244	42	4.2	43	77	8	164	22	35	19	22	1.96
11977208--11977250	16	2.6	16	81	7	50	0	16	2	81	0.79
11982434--11982525	39	2.4	39	87	3	132	25	21	22	30	1.99
11985082--11985322	121	2.0	120	99	0	464	29	12	13	44	1.80
11986463--11986537	35	2.1	37	87	12	111	26	26	4	42	1.73
11987975--11989620	171	9.7	170	77	6	1349	36	13	14	35	1.86
11987974--11989620	343	4.8	340	78	6	1550	36	13	14	35	1.85
11989917--11990052	67	2.0	67	86	0	191	36	24	12	26	1.91
11989910--11990030	35	3.6	34	72	10	104	33	23	13	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11994485--11994521	19	1.9	19	88	0	56	37	16	13	32	1.87
12003214--12003264	15	3.4	15	84	10	68	27	1	19	50	1.58
12011234--12011352	43	2.8	43	82	0	148	20	35	20	24	1.96
12015351--12015412	26	2.4	26	94	0	106	32	40	3	24	1.71
12015647--12015769	42	2.9	42	95	0	219	21	33	22	21	1.97
12021788--12021882	42	2.3	40	82	5	111	32	26	20	21	1.97
12022061--12022240	90	2.0	89	98	1	351	39	25	5	28	1.78
12022307--12022438	43	3.1	43	81	2	149	21	36	17	24	1.95
12023897--12024045	73	2.0	74	85	1	201	22	20	15	41	1.89
12025085--12025938	172	5.0	171	78	5	748	38	13	14	32	1.86
12025085--12028062	171	17.7	169	74	11	1439	39	14	13	32	1.85
12025781--12026091	152	2.0	153	98	0	597	39	12	14	32	1.84
12025962--12029875	343	11.6	338	71	11	1923	39	14	13	32	1.85
12027123--12027419	146	2.0	146	81	4	346	41	12	15	31	1.84
12027269--12028058	172	4.6	171	82	5	860	40	13	12	33	1.82
12028461--12029847	514	2.7	515	80	5	1441	39	13	14	33	1.85
12028461--12029876	171	8.3	170	76	6	1133	39	13	14	32	1.85
12032215--12032343	43	3.0	42	88	3	177	23	17	35	24	1.95
12033788--12033878	34	2.6	34	87	1	128	28	8	26	36	1.86
12036263--12036363	36	2.8	36	87	0	148	20	37	18	22	1.94
12037253--12037292	20	2.0	20	95	0	71	40	7	25	27	1.82
12040710--12040805	38	2.5	38	84	3	120	22	19	39	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12042401--12042460	25	2.4	25	85	0	75	28	28	15	28	1.96
12047609--12047650	21	2.1	20	82	8	50	57	9	0	33	1.31
12047780--12050474	171	15.8	170	74	10	1758	40	13	13	32	1.84
12048187--12048483	156	1.9	154	82	4	364	43	13	10	32	1.79
12048382--12050474	328	6.2	339	76	9	1676	40	13	13	32	1.84
12049762--12050052	159	1.8	157	85	1	402	38	13	15	32	1.86
12048830--12050393	657	2.3	664	86	4	2095	39	13	14	33	1.84
12062085--12062113	2	14.5	2	100	0	58	51	0	0	48	1.00
12062142--12062284	35	4.1	35	93	0	232	29	32	9	28	1.89
12063533--12063574	19	2.2	19	86	0	57	40	7	35	16	1.76
12066118--12066181	29	2.1	29	82	5	74	71	10	15	1	1.20
12066580--12066657	34	2.3	34	80	6	86	29	6	26	37	1.81
12066649--12066695	24	1.9	25	83	12	62	27	12	25	34	1.92
12066792--12066839	22	2.2	22	96	0	87	39	12	39	8	1.73
12066907--12066965	25	2.4	25	85	2	84	49	13	22	15	1.79
12070581--12070610	11	2.7	11	100	0	60	40	0	0	60	0.97
12070727--12070758	14	2.3	14	94	0	55	25	0	0	75	0.81
12070729--12070762	11	3.1	11	95	0	59	20	0	0	79	0.73
12074784--12077602	170	16.6	171	78	5	2377	39	14	13	32	1.85
12074792--12077602	342	8.3	343	77	7	2197	39	14	13	32	1.85
12074784--12077592	685	4.1	671	78	7	2319	39	14	13	32	1.85
12079273--12079297	8	3.1	8	100	0	50	48	16	0	36	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12080309--12082823	168	14.9	169	73	9	1456	38	14	13	33	1.85
12080339--12080959	338	1.8	337	79	6	729	38	14	13	33	1.86
12080678--12081535	343	2.5	335	79	6	829	38	14	13	33	1.85
12080308--12082920	171	15.5	168	73	8	1661	38	14	13	33	1.85
12082785--12083062	147	1.9	147	82	5	357	38	12	12	36	1.81
12083067--12084314	171	7.4	169	78	7	1041	38	14	13	33	1.85
12083067--12085024	340	5.8	337	75	9	1190	38	14	13	33	1.85
12083177--12085027	507	3.7	505	76	8	1352	38	14	13	33	1.85
12083247--12084334	336	3.2	339	78	8	830	38	15	12	33	1.85
12083333--12084877	336	4.6	336	75	11	809	38	14	13	33	1.85
12084377--12085024	170	3.8	169	80	5	646	37	13	14	33	1.86
12083076--12085028	663	2.9	659	76	9	1804	38	14	13	33	1.85
12085964--12086023	28	2.1	28	84	6	75	30	8	20	41	1.81
12089916--12089940	13	1.9	13	100	0	50	48	0	0	52	1.00
12093884--12095880	341	6.0	328	74	10	1202	38	13	13	33	1.85
12093820--12096176	170	14.0	170	74	9	1299	38	13	13	33	1.85
12094216--12096200	342	5.9	339	77	7	1560	38	14	13	33	1.85
12094215--12096075	170	11.0	169	76	7	1430	38	14	13	33	1.85
12096205--12096635	170	2.5	172	80	7	484	38	14	13	32	1.86
12098805--12098851	19	2.5	19	89	0	67	38	34	14	12	1.85
12099795--12100720	172	5.4	171	75	8	774	40	13	14	32	1.84
12099795--12100834	172	6.1	167	73	9	657	39	13	13	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12100885--12102488	171	9.4	171	77	5	1282	40	14	13	31	1.85
12100960--12104530	171	21.1	167	73	11	1165	39	13	14	32	1.85
12100867--12104530	341	10.8	341	77	6	2726	39	13	14	32	1.85
12100867--12104530	512	7.2	511	77	7	3168	39	13	14	32	1.85
12102484--12104530	170	12.0	170	79	4	2018	39	13	14	32	1.85
12108199--12109533	526	2.6	527	78	6	1210	37	13	14	33	1.86
12107881--12109545	171	9.7	170	76	7	1110	37	13	14	33	1.86
12110632--12110691	25	2.4	25	91	0	93	25	31	18	25	1.97
12111685--12111722	20	2.0	20	84	5	51	31	28	2	36	1.71
12112267--12112364	45	2.2	45	98	1	189	16	30	9	43	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91