genome.fa.s3.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  49  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17135527--17135710	41	4.4	41	95	0	287	42	2	1	53	1.20
17135616--17135683	19	3.4	19	76	11	82	38	2	0	58	1.13
17136403--17136453	20	2.4	21	80	12	59	43	0	1	54	1.11
17136520--17136607	26	3.4	26	81	7	83	47	1	0	51	1.08
17136504--17136602	15	6.5	15	71	13	51	50	2	0	47	1.12
17136563--17136621	29	2.0	29	84	12	77	55	0	0	44	0.99
17139563--17139588	4	6.5	4	100	0	52	50	23	0	26	1.50
17160276--17160370	44	2.2	44	92	0	163	24	10	22	43	1.84
17179753--17179810	14	4.5	13	79	18	50	25	0	1	72	0.94
17179875--17179918	6	7.3	6	82	7	54	20	2	0	77	0.88
17179881--17179926	23	2.0	23	91	0	74	17	4	0	78	0.91
17180064--17180125	7	9.6	7	77	16	55	25	1	0	72	0.94
17180064--17180125	11	6.0	11	81	10	62	25	1	0	72	0.94
17180987--17181076	37	2.4	37	88	3	128	18	37	18	24	1.94
17181831--17182162	37	8.9	37	85	3	434	40	21	15	22	1.91
17181835--17182162	75	4.4	75	88	4	434	41	21	16	21	1.90
17198096--17198228	37	3.7	36	80	7	130	12	36	23	27	1.91
17198134--17198236	33	3.0	32	81	8	116	13	33	24	28	1.93
17198762--17198822	13	4.8	12	78	13	68	16	1	0	81	0.76
17198762--17198829	26	2.6	26	82	13	77	16	2	0	80	0.82
17198762--17198829	13	5.2	12	79	13	64	16	2	0	80	0.82
17199926--17200095	36	4.7	35	77	11	166	27	39	14	19	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17218009--17218054	19	2.4	20	82	10	60	54	0	2	43	1.12
17218615--17218641	2	13.5	2	100	0	54	51	0	0	48	1.00
17218851--17218941	34	2.7	34	87	0	137	25	13	25	36	1.92
17219280--17219359	26	3.1	26	82	8	92	43	16	26	13	1.85
17219325--17219374	25	2.0	24	85	14	66	42	16	28	14	1.86
17222098--17222157	29	2.0	30	87	3	86	36	8	13	41	1.74
17224911--17224968	27	2.2	27	87	3	91	43	0	3	53	1.17
17225004--17225038	15	2.3	15	86	13	54	60	2	0	37	1.12
17225109--17225145	19	2.0	18	89	5	56	2	13	5	78	1.03
17227541--17227570	3	10.0	3	100	0	60	33	0	0	66	0.92
17227642--17227669	3	9.3	3	100	0	56	67	0	0	32	0.91
17229714--17229854	73	1.9	73	89	0	219	31	21	21	24	1.98
17229997--17230049	2	26.5	2	100	0	106	50	0	0	49	1.00
17230082--17230191	38	2.7	40	76	12	118	29	33	12	24	1.92
17230948--17230989	20	2.0	20	86	4	57	45	9	33	11	1.73
17234024--17234056	10	3.3	10	91	8	50	12	6	0	81	0.85
17241747--17241813	29	2.3	29	87	2	91	44	16	5	32	1.72
17245809--17245855	20	2.3	20	85	0	58	23	2	6	68	1.24
17248404--17248513	43	2.6	43	89	0	157	20	34	19	25	1.96
17257262--17257297	12	3.3	11	88	11	56	72	11	16	0	1.12
17261648--17261684	2	18.5	2	100	0	74	48	0	0	51	1.00
17262615--17262654	2	20.0	2	100	0	80	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17263352--17263389	15	2.4	17	86	8	53	47	0	0	52	1.00
17265555--17265701	47	3.1	47	90	0	231	26	12	32	27	1.93
17265533--17265743	94	2.2	94	78	1	244	28	14	30	26	1.95
17266334--17266705	31	12.6	31	81	11	415	31	18	18	31	1.95
17266483--17266527	22	2.0	22	91	0	72	35	20	15	28	1.93
17266432--17266587	84	1.9	84	93	0	267	33	17	17	30	1.94
17266394--17266706	115	2.7	115	93	0	529	32	17	18	31	1.95
17266536--17266704	84	2.0	84	95	0	302	30	17	20	31	1.95
17266598--17266642	22	2.0	22	100	0	90	31	17	22	28	1.97
17268132--17268477	145	2.4	145	85	0	442	28	21	19	30	1.97
17270673--17270980	31	9.9	31	79	2	262	29	29	15	26	1.96
17275206--17275335	23	5.7	23	74	9	113	35	23	13	28	1.92
17275224--17275286	22	2.9	21	75	15	56	39	25	12	22	1.89
17275273--17275312	12	3.4	12	80	19	57	25	27	17	30	1.97
17280374--17280549	4	44.0	4	89	0	109	34	0	15	50	1.44
17280387--17280531	8	18.6	8	86	5	181	31	0	17	50	1.47
17280387--17280531	12	12.4	12	81	5	181	31	0	17	50	1.47
17280389--17280547	12	13.2	12	82	5	178	33	0	15	50	1.45
17290381--17290444	29	2.2	28	86	2	83	29	7	20	42	1.80
17290381--17290444	28	2.2	29	83	8	78	29	7	20	42	1.80
17292822--17292882	32	1.9	32	82	0	77	34	16	21	27	1.95
17292916--17292968	27	2.0	27	88	0	79	35	13	16	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17292917--17293010	27	3.5	27	78	8	75	42	12	15	28	1.84
17293760--17293795	17	2.1	17	94	0	63	27	13	2	55	1.52
17296293--17296341	19	2.6	19	90	0	80	10	36	8	44	1.68
17297197--17297302	38	2.7	40	85	2	135	23	12	38	25	1.90
17299068--17299145	38	2.1	38	100	0	156	17	7	43	30	1.77
17303540--17303588	2	24.5	2	100	0	98	51	0	0	48	1.00
17304077--17304116	19	2.1	19	100	0	80	42	20	5	32	1.73
17312828--17312873	19	2.3	20	92	3	76	13	4	17	65	1.42
17314121--17314184	27	2.3	30	82	15	84	29	1	3	65	1.17
17314158--17314203	19	2.4	19	88	0	65	23	0	4	71	1.03
17315796--17316032	80	3.0	80	87	0	348	32	25	10	31	1.89
17318954--17319010	16	3.5	16	79	11	62	19	5	10	64	1.43
17320646--17320719	33	2.2	33	92	0	121	29	20	25	24	1.99
17321040--17321080	2	20.5	2	100	0	82	48	0	0	51	1.00
17321137--17321179	22	2.0	22	85	0	59	34	20	11	32	1.89
17321293--17321420	36	3.6	35	86	5	159	31	35	11	21	1.90
17324909--17325012	38	2.6	40	86	4	140	22	16	39	22	1.92
17329293--17329441	54	2.7	56	88	2	221	23	15	39	21	1.91
17333752--17333786	17	2.1	17	94	0	61	22	20	31	25	1.98
17338710--17338760	26	1.9	27	84	11	70	31	1	0	66	1.03
17338717--17338776	23	2.7	23	77	15	72	31	1	0	66	1.01
17338745--17338786	14	2.8	15	75	10	50	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17339015--17339067	13	4.0	13	80	11	63	50	0	0	49	1.00
17344405--17344543	47	3.0	47	80	0	161	50	10	11	28	1.71
17344552--17344624	38	1.9	37	88	2	110	52	8	12	27	1.67
17349353--17349390	19	2.0	20	94	5	69	36	15	26	21	1.93
17352891--17352948	28	2.1	29	87	6	84	27	20	18	32	1.97
17357160--17357275	46	2.5	47	92	1	198	55	10	8	25	1.62
17357517--17357597	33	2.5	33	76	9	94	38	23	12	25	1.90
17361288--17361375	37	2.4	34	80	14	88	40	22	12	23	1.88
17371765--17371914	59	2.5	60	83	3	196	34	32	11	22	1.89
17374348--17374385	19	2.0	20	89	5	60	18	10	18	52	1.73
17377679--17377859	70	2.6	70	77	12	176	41	2	3	52	1.30
17377679--17377776	22	4.3	22	74	15	83	44	1	3	51	1.24
17377756--17377813	15	4.0	15	70	20	52	37	5	5	51	1.46
17377767--17377823	28	2.0	28	100	0	114	35	3	3	57	1.33
17377789--17378080	133	2.2	131	83	8	321	38	1	3	57	1.23
17377852--17378416	159	3.7	152	76	12	439	38	2	3	55	1.32
17377978--17378416	159	2.9	158	81	9	464	38	3	3	55	1.34
17378024--17378104	22	3.5	22	73	15	81	35	2	1	60	1.18
17378019--17378086	27	2.5	26	81	13	75	35	1	1	61	1.14
17378056--17378154	41	2.4	41	84	1	117	38	6	2	53	1.37
17378276--17378530	113	2.3	111	87	4	347	40	1	2	55	1.26
17390230--17390254	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17391610--17391653	20	2.2	20	91	0	70	22	9	20	47	1.78
17393200--17393231	2	16.0	2	93	0	55	50	0	3	46	1.17
17395645--17395745	2	51.5	2	81	14	122	46	0	3	48	1.20
17396241--17396309	15	4.6	15	98	0	129	37	5	21	34	1.78
17396232--17396309	30	2.6	30	93	2	129	37	7	20	34	1.81
17396528--17396614	33	2.6	33	85	1	111	31	1	0	67	0.98
17396640--17396721	15	5.6	14	70	17	60	28	2	0	69	1.01
17396587--17396718	55	2.4	53	86	7	167	30	3	0	65	1.10
17399105--17399180	38	2.0	38	89	5	118	21	14	25	39	1.91
17400543--17400581	7	5.4	7	87	3	51	41	38	5	15	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91