genome.fa.s3.2.7.7.80.10.50.1000.83.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  83  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31346299--31346325	2	13.5	2	100	0	54	51	0	0	48	1.00
31347659--31347693	7	5.0	7	92	0	52	65	17	2	14	1.38
31348911--31348990	42	1.9	42	92	0	133	51	6	10	32	1.60
31352365--31352415	20	2.3	23	80	9	63	60	3	1	33	1.26
31356361--31356395	18	1.9	18	100	0	70	40	28	20	11	1.87
31366637--31366765	64	2.0	64	92	3	215	28	19	16	35	1.93
31381157--31381233	2	40.0	2	82	12	99	48	2	0	48	1.15
31389873--31389899	12	2.2	12	100	0	54	29	11	7	51	1.64
31393890--31393939	23	2.3	23	86	6	68	28	16	16	40	1.89
31406378--31406410	2	16.5	2	100	0	66	51	0	0	48	1.00
31407263--31407313	25	2.0	25	100	0	102	21	7	19	50	1.72
31416104--31416199	47	2.0	47	91	0	156	27	8	10	54	1.63
31416366--31416402	18	2.1	17	90	10	56	37	8	0	54	1.30
31419130--31419379	125	2.0	125	93	0	428	30	15	15	38	1.88
31427799--31427828	2	15.0	2	92	0	51	46	0	0	53	1.00
31434813--31434857	10	4.4	11	75	16	51	77	4	8	8	1.10
31447505--31447529	7	3.6	7	100	0	50	28	48	12	12	1.76
31450157--31450190	2	17.0	2	100	0	68	50	0	0	50	1.00
31452120--31452152	2	16.5	2	93	0	57	48	3	0	48	1.17
31456371--31456395	2	12.5	2	100	0	50	48	0	0	52	1.00
31458317--31458369	2	26.5	2	96	0	97	50	1	0	47	1.12
31463262--31463295	17	1.9	18	88	5	52	50	0	5	44	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31465778--31465809	15	2.1	15	94	0	55	37	12	21	28	1.90
31468319--31468392	2	37.0	2	91	5	114	2	50	0	45	1.16
31476418--31476481	19	3.5	18	83	10	69	45	0	0	54	0.99
31476422--31476466	19	2.4	19	96	0	81	44	0	0	55	0.99
31476419--31476469	19	2.5	20	87	9	77	45	0	0	54	0.99
31489168--31489200	7	4.7	7	92	0	57	24	15	33	27	1.95
31494396--31494447	2	26.5	2	84	11	72	44	0	51	1	1.12
31496550--31496597	25	1.9	25	83	8	62	50	4	8	37	1.52
31496691--31496722	15	2.1	15	94	0	55	56	6	3	34	1.40
31497167--31497259	29	3.2	29	84	0	123	16	21	12	49	1.78
31497167--31497272	29	3.7	29	81	0	113	17	21	13	47	1.82
31497793--31497900	30	3.8	30	76	15	111	41	12	12	33	1.80
31497793--31497897	54	1.9	55	92	1	176	40	13	12	33	1.82
31497810--31497907	27	3.6	28	76	15	100	41	10	11	36	1.75
31535311--31535462	38	4.1	38	91	3	227	12	30	8	48	1.71
31535311--31535462	74	2.0	76	89	2	236	12	30	8	48	1.71
31552981--31553030	2	25.0	2	100	0	100	50	0	0	50	1.00
31558836--31558912	30	2.4	33	82	6	88	58	0	7	33	1.27
31568191--31568388	66	3.0	66	100	0	396	19	21	25	33	1.97
31569129--31569229	45	2.3	44	83	5	116	46	3	3	45	1.40
31570889--31571315	211	2.0	211	98	0	818	29	18	20	30	1.97
31573736--31573769	17	2.0	17	88	11	52	26	29	5	38	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31574253--31574311	28	2.1	29	83	3	75	42	1	13	42	1.54
31576680--31576802	25	4.9	25	91	0	183	27	26	17	28	1.97
31583321--31583359	2	19.5	2	89	0	60	48	2	2	46	1.29
31595167--31595600	216	2.0	217	89	1	663	30	19	19	30	1.96
31599204--31599242	18	2.2	18	100	0	78	48	5	0	46	1.24
31599868--31599899	13	2.3	15	89	10	50	53	0	3	43	1.16
31602268--31602348	29	2.7	30	75	3	74	59	3	6	30	1.39
31615029--31615060	16	2.0	16	93	0	55	37	28	0	34	1.57
31621664--31621722	29	2.1	27	84	9	73	33	11	0	54	1.37
31640288--31640344	27	2.2	26	81	6	71	42	1	5	50	1.35
31640452--31640509	27	2.2	27	87	3	82	39	3	1	55	1.27
31640389--31640643	123	2.1	119	90	2	393	39	1	2	56	1.24
31640502--31640643	26	5.9	26	65	20	92	40	1	1	56	1.17
31640496--31640626	32	4.2	33	68	24	84	40	0	2	56	1.17
31640551--31640575	5	5.0	5	100	0	50	40	0	0	60	0.97
31640557--31640630	21	3.5	20	70	21	53	40	0	0	59	0.97
31640478--31640622	46	3.1	46	70	14	127	40	1	2	56	1.19
31640569--31640628	25	2.3	27	85	8	79	41	0	0	58	0.98
31654589--31654618	14	2.1	14	93	0	51	26	0	0	73	0.84
31654560--31654618	18	3.2	18	77	18	59	25	0	1	72	0.93
31672974--31673016	20	2.2	20	83	8	52	74	2	13	9	1.16
31674191--31674222	2	16.0	2	93	0	55	3	50	0	46	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31699500--31699537	17	2.2	17	90	9	60	52	0	47	0	1.00
31700220--31700297	33	2.4	33	84	0	102	46	15	1	37	1.54
31704028--31704062	2	18.0	2	94	5	63	48	0	0	51	1.00
31717625--31717700	37	2.1	37	97	0	143	10	23	17	48	1.78
31723323--31723367	2	23.0	2	95	4	83	51	0	0	48	1.00
31723321--31723364	21	2.1	21	100	0	88	52	0	0	47	1.00
31731597--31731665	26	2.7	26	83	0	84	27	11	37	23	1.89
31739696--31739938	124	2.0	119	82	4	288	42	11	11	34	1.77
31746385--31746508	60	2.0	61	96	1	232	18	10	12	58	1.63
31755060--31755119	30	2.0	30	96	0	111	26	31	16	25	1.96
31761824--31761849	1	26.0	1	100	0	52	0	100	0	0	0.00
31767643--31767710	34	2.0	34	91	0	109	51	5	8	33	1.57
31769113--31769151	17	2.3	17	86	0	51	41	10	7	41	1.68
31769177--31769220	22	2.0	22	86	0	61	43	9	15	31	1.79
31787580--31787609	3	10.3	3	92	7	53	70	0	0	30	0.88
31787969--31787994	2	13.0	2	100	0	52	0	0	50	50	1.00
31796548--31796589	14	2.9	15	82	7	59	47	7	4	40	1.52
31796690--31796736	19	2.6	18	80	10	51	61	4	0	34	1.15
31799228--31799258	16	1.9	16	93	0	53	48	0	3	48	1.17
31800292--31800343	26	2.0	26	100	0	104	38	15	11	34	1.83
31803300--31803344	2	22.5	2	100	0	90	48	0	0	51	1.00
31807725--31807794	2	34.5	2	97	2	131	50	1	0	48	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31808253--31808295	2	21.5	2	100	0	86	51	0	48	0	1.00
31809566--31809610	2	22.5	2	100	0	90	0	48	0	51	1.00
31810960--31811048	2	44.0	2	93	2	151	49	0	48	2	1.13
31822135--31822168	16	2.1	17	88	5	52	61	0	17	20	1.34
31827522--31827562	21	2.0	21	100	0	82	19	4	43	31	1.72
31834111--31834148	20	1.9	20	84	10	51	65	2	0	31	1.06
31834119--31834190	35	2.1	34	86	2	99	61	9	0	29	1.28
31834482--31834547	20	3.1	22	79	12	68	51	0	0	48	1.00
31834858--31834895	18	2.0	20	85	10	53	44	7	5	42	1.56
31841356--31841405	15	3.1	15	77	11	55	2	42	0	56	1.11
31843141--31843187	23	2.0	23	95	0	85	23	48	6	21	1.72
31847542--31847593	21	2.5	21	90	0	86	25	13	32	28	1.93
31848379--31848558	93	1.9	93	95	0	324	28	12	20	38	1.88
31872878--31872923	23	2.0	23	95	0	83	19	17	2	60	1.46
31894050--31894101	22	2.3	22	75	12	52	26	11	13	48	1.77
31894189--31894254	26	2.5	25	81	13	80	31	9	3	56	1.46
31905129--31905173	19	2.4	19	84	0	54	33	2	2	62	1.20
31913622--31913648	6	4.5	6	100	0	54	14	0	0	85	0.61
31920065--31920105	21	2.0	21	85	9	57	31	7	9	51	1.62
31923823--31923874	26	2.0	26	96	0	95	23	21	11	44	1.84
31927577--31927637	6	10.0	7	79	16	50	1	36	0	62	1.05
31927577--31927637	18	3.4	18	80	11	72	1	36	0	62	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31927585--31927636	3	17.3	3	84	7	70	1	34	0	63	1.06
31929412--31929444	16	2.1	16	94	0	57	30	21	12	36	1.90
31935003--31935037	2	17.5	2	100	0	70	51	0	48	0	1.00
31943294--31943326	16	2.1	16	88	11	50	54	0	0	45	0.99
31943304--31943376	29	2.5	27	80	12	83	58	0	1	39	1.06
31943314--31943368	25	2.0	27	86	13	78	61	0	1	36	1.06
31943267--31943379	30	3.7	31	73	17	96	56	0	0	42	1.05
31944535--31944576	21	2.0	21	95	0	75	45	9	0	45	1.36
31949078--31949127	27	1.9	27	84	8	68	42	14	24	20	1.88
31949108--31949387	102	2.8	101	81	4	348	43	14	20	21	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91