genome.fa.s3.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  45  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15645305--15645382	37	2.1	37	97	0	147	26	8	38	25	1.86
15673966--15674018	17	3.1	17	78	5	63	35	18	33	11	1.87
15674368--15674549	73	2.5	72	80	8	183	39	18	21	20	1.93
15678441--15678488	21	2.3	20	79	10	60	14	22	6	56	1.61
15678446--15678486	21	1.9	22	90	5	66	17	24	7	51	1.70
15681679--15681712	12	2.8	12	95	0	59	0	23	2	73	0.97
15681678--15681712	15	2.3	15	90	9	54	0	25	2	71	1.00
15687031--15687059	14	2.1	14	100	0	58	24	6	27	41	1.80
15690058--15690298	123	2.0	123	97	0	455	28	16	14	40	1.88
15693813--15693917	54	1.9	54	94	0	183	27	39	13	20	1.89
15693889--15694255	184	2.0	183	99	0	716	31	28	13	27	1.93
15695314--15695345	6	5.3	6	100	0	64	15	0	0	84	0.63
15700412--15700456	2	22.5	2	100	0	90	0	48	0	51	1.00
15704291--15704463	73	2.4	72	80	5	179	42	16	20	20	1.89
15704939--15704980	11	3.7	11	79	17	50	33	11	28	26	1.92
15710598--15710658	2	30.5	2	89	0	95	4	49	0	45	1.23
15717099--15717142	20	2.2	21	88	8	65	40	15	22	20	1.90
15718464--15718638	73	2.4	73	82	9	205	43	17	18	20	1.88
15723490--15723604	37	3.1	37	87	5	178	24	35	9	30	1.87
15724668--15724730	23	2.8	21	75	15	54	23	19	1	55	1.51
15727478--15727518	21	2.1	19	86	9	55	29	0	9	60	1.28
15730706--15730772	33	2.0	33	94	5	118	26	16	23	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15730717--15730798	33	2.5	33	86	4	103	29	18	21	30	1.97
15730750--15730812	33	1.9	33	83	0	81	31	23	17	26	1.97
15735067--15735465	202	1.9	207	86	6	562	42	9	17	30	1.82
15735573--15735928	26	13.3	26	71	10	137	34	14	11	39	1.82
15735573--15735650	29	2.8	29	82	9	90	33	10	10	46	1.72
15736581--15736645	23	2.8	23	83	0	76	29	26	10	33	1.90
15739522--15739610	36	2.5	36	88	0	133	38	14	14	32	1.87
15740687--15740768	28	3.0	28	81	1	103	30	26	13	29	1.94
15740699--15740797	28	3.5	28	81	0	108	32	24	14	29	1.94
15741229--15741364	63	2.2	63	79	2	148	23	15	19	41	1.89
15744470--15744518	20	2.5	20	96	0	89	34	8	26	30	1.86
15745597--15745636	21	1.9	21	84	0	53	30	25	22	22	1.99
15747579--15748791	512	2.4	511	88	1	1793	35	17	12	34	1.88
15760692--15760722	11	2.8	11	95	0	53	6	16	19	58	1.59
15761322--15761383	30	2.1	30	84	3	81	38	14	4	41	1.67
15763538--15763600	32	2.0	30	87	6	90	30	7	22	39	1.82
15771440--15771573	42	3.2	42	82	4	146	20	26	22	29	1.99
15771410--15771573	84	1.9	85	79	6	181	21	29	20	29	1.98
15779304--15779347	21	2.0	22	82	8	54	38	25	4	31	1.76
15785289--15785343	22	2.5	22	96	0	101	20	27	32	20	1.97
15785631--15785707	22	3.5	22	90	0	118	27	25	20	25	1.99
15785982--15786041	23	2.6	23	91	0	93	33	40	1	25	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15786078--15786169	43	2.1	43	83	0	112	22	33	18	25	1.97
15787183--15787321	71	2.0	71	100	0	278	23	18	12	45	1.84
15790193--15790242	24	2.1	24	96	0	91	50	12	6	32	1.64
15805424--15805526	38	2.6	39	84	6	129	23	40	15	20	1.90
15805850--15805888	2	20.0	2	94	5	71	51	48	0	0	1.00
15809025--15809105	30	2.8	28	77	9	81	44	0	27	28	1.55
15810565--15810624	25	2.4	25	82	0	75	25	11	35	28	1.91
15818814--15818860	21	2.3	21	85	3	60	34	10	23	31	1.89
15822921--15822979	26	2.1	28	82	14	70	18	3	10	67	1.33
15827062--15827228	73	2.3	74	82	4	196	23	19	15	40	1.90
15828012--15828054	22	2.0	22	95	0	77	20	27	2	48	1.62
15833539--15833567	14	2.0	15	93	6	51	20	20	10	48	1.79
15841267--15841418	42	3.8	41	77	9	143	24	36	16	23	1.94
15841517--15841544	2	14.0	2	100	0	56	50	0	0	50	1.00
15842565--15842601	18	2.1	18	89	0	56	0	35	0	64	0.94
15847391--15847423	17	1.9	17	88	11	50	42	15	3	39	1.62
15849052--15849082	2	15.5	2	93	0	53	48	0	3	48	1.17
15849090--15849210	61	2.0	61	90	0	188	24	17	30	27	1.97
15854423--15854492	36	1.9	36	88	5	106	30	35	20	14	1.92
15854568--15854637	36	2.0	35	86	8	97	27	27	24	21	1.99
15860939--15861193	68	3.8	67	83	5	282	35	20	15	29	1.93
15860939--15861261	136	2.4	135	77	7	303	35	20	16	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15861101--15861259	67	2.3	69	81	5	198	33	20	16	29	1.94
15861987--15862025	16	2.4	16	86	0	60	17	2	15	64	1.41
15863243--15863493	68	3.7	68	74	4	211	37	10	16	35	1.84
15864890--15864999	37	3.0	37	83	0	121	26	11	36	25	1.90
15866716--15866767	20	2.6	20	78	0	50	44	9	15	30	1.78
15869645--15869808	31	5.3	30	74	11	136	16	7	23	51	1.70
15869660--15869835	93	1.9	93	80	6	205	16	9	22	51	1.72
15880655--15880735	35	2.3	35	86	0	117	29	19	23	27	1.98
15890397--15890444	21	2.3	20	75	10	51	14	20	6	58	1.58
15895544--15895665	43	2.8	43	80	9	133	27	18	36	18	1.93
15901043--15901075	18	1.9	18	88	11	52	15	6	12	66	1.42
15901706--15901795	46	2.0	46	86	2	128	30	13	13	43	1.82
15903045--15903098	2	27.5	2	96	3	101	50	0	0	50	1.00
15906305--15906335	2	15.5	2	93	0	53	48	3	0	48	1.17
15908104--15908153	26	1.9	26	95	0	91	24	6	20	50	1.70
15909519--15909549	15	2.1	15	93	0	53	12	64	3	19	1.41
15933479--15933515	19	1.9	19	100	0	74	10	21	35	32	1.88
15934193--15934262	2	35.0	2	100	0	140	50	0	0	50	1.00
15938478--15938556	30	2.6	31	92	4	135	25	25	21	27	1.99
15938858--15938976	43	2.8	43	87	6	161	26	35	15	23	1.94
15938858--15938991	42	3.2	42	85	5	180	24	34	15	25	1.95
15941001--15941031	15	2.1	15	93	0	53	77	0	16	6	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15951916--15951960	22	2.0	22	100	0	90	51	17	4	26	1.65
15959110--15959150	21	1.9	22	95	5	75	53	7	21	17	1.67
15959107--15959156	21	2.3	21	82	3	73	60	6	20	14	1.55
15962119--15962325	35	5.9	35	81	3	222	35	7	14	42	1.74
15962300--15962343	18	2.4	18	100	0	88	36	4	13	45	1.64
15962318--15962385	35	1.9	35	90	0	109	35	4	13	47	1.63
15962264--15962376	53	2.1	54	86	1	156	32	6	15	45	1.72
15962320--15962406	35	2.5	35	84	1	102	37	5	14	41	1.70
15962230--15962408	89	2.0	90	85	3	245	34	6	16	43	1.72
15965144--15965223	35	2.3	35	84	0	106	35	15	20	30	1.93
15966397--15966529	35	3.9	35	67	10	87	29	15	24	31	1.95
15966388--15966520	67	2.0	67	91	2	214	26	15	24	33	1.95
15968062--15968116	20	2.8	20	97	0	101	18	30	7	43	1.77
15968878--15968919	20	2.2	19	84	16	52	30	2	26	40	1.69
15968914--15969005	37	2.5	37	92	3	150	28	8	35	27	1.86
15971521--15971635	38	3.0	38	90	2	167	24	34	17	23	1.96
15979938--15979993	25	2.3	24	81	9	69	66	14	8	10	1.45
15983117--15983169	2	26.5	2	96	0	97	52	0	47	0	1.00
15983718--15983742	2	12.5	2	100	0	50	52	0	0	48	1.00
15984714--15984851	29	4.9	28	87	3	195	38	13	9	39	1.76
15984704--15984851	57	2.6	56	86	5	199	39	12	8	39	1.74
15993004--15993035	16	2.0	16	93	0	55	12	3	21	62	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15994807--15994860	24	2.2	25	90	3	83	24	29	20	25	1.99
15997243--15997287	2	23.0	2	95	4	83	48	0	0	51	1.00
16004911--16005175	68	3.9	68	80	2	219	36	10	20	33	1.86
16005016--16005175	66	2.4	67	80	2	178	36	10	18	33	1.86
16006942--16006993	20	2.6	21	81	6	54	50	11	7	30	1.67
16007045--16007151	35	3.1	35	89	1	162	25	35	10	28	1.89
16007848--16007891	22	2.0	22	86	8	63	31	20	6	40	1.79
16009257--16009389	43	3.0	46	80	6	164	22	35	15	26	1.94
16009381--16009425	20	2.2	21	84	11	58	40	26	2	31	1.68
16012209--16012242	11	3.1	11	95	0	59	70	0	0	29	0.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91