genome.fa.s3.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  27  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9252400--9252424	11	2.3	11	100	0	50	72	0	0	28	0.86
9254049--9254073	2	12.5	2	100	0	50	48	0	0	52	1.00
9255015--9255074	25	2.4	25	82	0	75	31	13	26	28	1.94
9259985--9260053	35	2.0	35	82	5	86	28	27	13	30	1.94
9272016--9272061	23	2.0	23	100	0	92	39	0	21	39	1.54
9272995--9273114	49	2.4	49	91	0	195	25	15	35	23	1.95
9281299--9281370	34	2.1	34	89	5	110	23	37	9	29	1.87
9282888--9282942	20	2.9	18	78	19	67	69	1	18	10	1.27
9283276--9283310	6	5.8	6	100	0	70	14	0	0	85	0.59
9283337--9283625	158	1.8	157	89	3	456	37	8	15	38	1.78
9286049--9286217	85	2.0	84	94	0	284	33	6	27	31	1.82
9288278--9288384	39	2.7	39	83	0	133	35	19	21	23	1.96
9295700--9295738	2	19.5	2	100	0	78	51	0	0	48	1.00
9295740--9295780	20	2.0	21	85	4	57	31	2	24	41	1.68
9297894--9297942	21	2.3	21	96	0	89	22	18	6	53	1.66
9306353--9306871	259	2.0	258	99	0	1020	37	9	21	31	1.85
9308428--9308458	2	15.5	2	100	0	62	51	48	0	0	1.00
9308485--9308528	22	2.0	23	95	4	81	31	47	0	20	1.50
9308533--9308642	43	2.6	43	86	2	141	20	36	17	25	1.94
9311027--9311061	3	11.7	3	93	0	61	31	0	34	34	1.58
9311051--9311130	38	2.1	38	88	4	117	28	10	32	28	1.89
9312524--9312652	36	3.1	41	72	23	119	24	13	35	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9312441--9312689	81	3.0	84	86	6	364	22	14	36	26	1.92
9312543--9312688	37	3.8	36	73	15	121	20	14	39	26	1.91
9312550--9312688	36	3.6	36	73	16	116	21	14	38	25	1.91
9312838--9312877	21	2.0	21	85	9	57	25	10	20	45	1.81
9315118--9315171	28	1.9	28	85	14	76	31	14	22	31	1.94
9316188--9316219	2	16.0	2	100	0	64	50	0	0	50	1.00
9317436--9317596	86	1.8	86	81	5	198	29	18	13	39	1.88
9321012--9321075	19	3.4	19	100	0	128	35	4	14	45	1.65
9324453--9325187	367	2.0	367	98	1	1438	42	16	13	27	1.86
9327570--9327602	17	1.9	17	88	11	50	39	3	15	42	1.62
9331918--9331962	21	2.2	21	92	4	74	15	20	8	55	1.66
9335216--9335248	11	2.8	12	86	13	50	66	0	21	12	1.23
9342565--9342589	13	1.9	13	100	0	50	48	0	0	52	1.00
9343307--9343503	100	2.0	99	97	0	367	41	17	12	28	1.86
9343840--9343903	28	2.2	29	86	2	85	48	17	6	28	1.71
9348589--9348629	21	2.1	19	86	9	55	60	9	0	29	1.28
9350929--9351072	38	3.8	38	77	5	139	29	18	20	30	1.97
9350929--9351072	76	1.9	76	84	5	193	29	18	20	30	1.97
9360963--9361001	12	3.2	12	85	10	53	2	10	2	84	0.81
9360955--9360989	18	2.0	17	88	5	52	0	14	2	82	0.77
9362048--9362123	36	2.1	36	92	0	125	30	7	25	36	1.84
9364768--9364812	2	22.5	2	100	0	90	0	0	48	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9373121--9373155	11	3.3	11	88	8	54	65	11	22	0	1.24
9375790--9375924	43	3.1	43	90	0	198	25	34	17	23	1.96
9380068--9380106	10	3.8	10	80	6	51	15	35	5	43	1.69
9380066--9380106	21	2.0	21	100	0	82	14	36	4	43	1.67
9381356--9381445	36	2.5	36	87	0	117	23	13	35	27	1.92
9381669--9381828	84	1.9	84	89	0	248	26	25	16	32	1.96
9381801--9382010	62	3.4	62	81	2	208	25	21	18	34	1.96
9381797--9382030	124	1.9	124	81	3	283	26	21	17	34	1.96
9381797--9382030	62	3.8	61	81	3	198	26	21	17	34	1.96
9388078--9388118	21	2.0	21	90	0	64	17	39	4	39	1.71
9389373--9389456	36	2.3	36	83	0	105	22	13	35	28	1.92
9389577--9389606	2	15.0	2	100	0	60	50	0	0	50	1.00
9389742--9389975	62	3.8	61	80	3	227	26	19	18	36	1.94
9391198--9391366	60	2.8	60	77	2	169	33	18	20	28	1.96
9391642--9391668	2	13.5	2	100	0	54	51	48	0	0	1.00
9391736--9391845	43	2.6	43	89	2	159	21	37	18	22	1.94
9393906--9393986	33	2.5	33	83	0	99	37	17	9	35	1.83
9402336--9402368	17	1.9	17	100	0	66	18	33	18	30	1.94
9405094--9405216	63	2.0	62	88	1	183	21	32	13	33	1.91
9405562--9405638	31	2.5	31	95	0	145	25	15	20	37	1.92
9406845--9406875	11	2.8	11	95	0	53	38	12	22	25	1.90
9409529--9409915	117	3.3	117	88	1	553	23	16	30	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9412114--9412378	145	1.8	144	85	3	370	29	18	20	32	1.96
9413794--9413868	31	2.4	31	97	0	141	40	18	14	26	1.90
9414547--9414900	47	7.6	46	74	6	210	26	28	18	26	1.98
9414635--9414900	141	1.9	141	82	6	333	27	30	16	25	1.97
9414547--9414900	94	3.8	92	76	5	293	26	28	18	26	1.98
9416701--9416848	60	2.5	60	86	0	224	23	20	22	33	1.97
9417708--9417856	47	3.2	47	91	0	235	22	34	16	26	1.95
9496836--9497002	58	2.9	57	97	0	307	38	8	14	37	1.78
9498395--9498432	20	1.9	20	100	0	76	28	5	21	44	1.73
9504310--9504356	19	2.6	18	79	3	58	51	2	2	44	1.25
9505207--9505288	35	2.2	36	81	10	87	34	8	37	19	1.82
9505437--9505498	2	32.0	2	77	6	65	56	1	0	41	1.09
9512216--9512253	20	1.9	20	94	0	67	28	7	21	42	1.81
9518507--9518544	2	19.5	2	89	5	60	52	0	0	47	1.00
9529009--9529049	21	1.9	22	90	5	66	51	7	24	17	1.70
9529009--9529053	20	2.2	21	84	11	58	55	6	22	15	1.63
9529007--9529054	21	2.3	20	79	10	60	56	6	22	14	1.61
9537447--9537511	21	3.1	21	75	2	60	38	12	15	33	1.85
9541693--9541794	38	2.7	37	83	13	136	23	40	15	20	1.91
9541693--9541790	19	5.1	19	63	11	56	22	39	16	21	1.92
9541906--9541948	2	21.0	2	90	4	68	48	46	2	2	1.27
9547460--9547572	58	1.9	58	87	0	163	40	15	8	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9548825--9549298	179	2.7	180	82	7	531	33	14	15	35	1.89
9555942--9556005	15	4.5	13	80	17	58	78	0	0	21	0.76
9555950--9555992	17	2.7	16	85	7	61	76	0	0	23	0.78
9555943--9555992	17	3.1	17	77	8	52	78	0	0	22	0.76
9558290--9558505	78	2.8	77	83	4	254	23	25	26	24	2.00
9569619--9570106	62	7.9	62	87	2	696	32	9	19	38	1.84
9569619--9570106	124	4.0	124	92	2	804	32	9	19	38	1.84
9569619--9570106	245	2.0	247	91	2	802	32	9	19	38	1.84
9570012--9570302	102	2.7	103	82	6	296	33	11	18	36	1.87
9569950--9570250	164	1.8	165	80	5	367	33	11	19	35	1.88
9570416--9570458	17	2.8	16	82	10	54	76	0	0	23	0.78
9570411--9570468	12	4.6	12	80	19	57	79	0	0	20	0.74
9572020--9572071	7	6.9	7	82	10	50	75	1	1	21	1.00
9572512--9572550	16	2.4	16	82	4	51	76	0	0	23	0.78
9572020--9572985	483	2.0	483	99	0	1900	41	13	15	29	1.86
9577707--9578017	163	1.9	164	93	3	538	21	19	15	43	1.87
9580973--9581000	12	2.3	12	100	0	56	67	0	0	32	0.91
9581377--9581742	86	4.2	86	88	1	527	46	7	7	39	1.59
9581384--9581690	42	7.1	42	68	20	179	47	7	6	38	1.58
9587255--9587297	22	2.0	22	81	9	52	16	25	6	51	1.69
9587643--9587688	20	2.3	20	96	0	83	45	21	4	28	1.71
9590330--9590511	60	3.0	60	86	0	256	21	32	19	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9591364--9591436	34	2.1	34	87	5	103	8	35	5	50	1.55
9591380--9591450	34	2.1	34	89	2	108	11	39	7	42	1.68
9591461--9591521	15	4.0	15	76	8	61	0	39	0	60	0.97
9591459--9591510	19	2.7	19	82	5	52	0	38	0	61	0.96
9591687--9591731	17	2.6	18	82	13	58	4	24	0	71	1.05
9596660--9596765	32	3.2	31	72	17	106	35	26	12	25	1.91
9596629--9596805	35	5.2	34	70	17	111	35	26	12	25	1.91
9596621--9596808	67	2.8	67	87	3	263	35	26	13	25	1.92
9605675--9605760	42	2.0	42	97	0	163	22	24	16	37	1.93
9608103--9608213	32	3.4	32	79	11	143	34	28	13	23	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91