genome.fa.s3.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  80  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29745263--29745301	20	2.0	20	100	0	78	43	0	20	35	1.52
29753650--29753720	36	2.0	36	94	0	124	42	9	19	28	1.83
29755150--29755190	20	2.0	20	100	0	82	19	19	9	51	1.74
29762069--29762113	19	2.2	21	84	7	58	42	0	0	57	0.98
29762074--29762136	29	2.2	28	83	5	74	49	0	0	50	1.00
29762094--29762141	14	3.4	14	80	11	53	47	0	0	52	1.00
29762107--29762194	34	2.7	32	82	5	104	47	1	0	51	1.08
29762124--29762168	20	2.3	19	80	7	54	42	2	0	55	1.12
29763007--29763072	31	2.3	28	84	10	80	43	10	15	30	1.80
29763013--29763098	30	2.8	30	85	1	109	39	13	12	33	1.83
29786209--29786293	25	3.3	26	76	18	70	49	2	0	48	1.14
29786237--29786290	25	2.2	25	87	9	76	46	3	0	50	1.19
29786265--29786307	15	3.0	14	83	6	50	41	2	0	55	1.12
29786235--29786312	40	1.9	41	84	7	106	44	2	0	52	1.14
29786200--29786299	15	6.9	15	72	19	63	48	2	0	50	1.12
29786358--29786417	31	1.9	31	83	6	77	53	3	3	40	1.34
29789054--29789099	16	2.6	19	73	20	53	21	8	17	52	1.71
29794272--29794323	25	2.0	27	88	7	81	80	1	17	0	0.80
29794272--29794316	13	3.5	13	78	9	56	80	2	17	0	0.82
29798381--29798443	18	3.5	18	82	0	72	26	14	39	19	1.90
29798382--29798452	36	2.0	36	82	0	88	28	15	39	16	1.89
29798535--29798569	18	1.9	18	94	0	61	22	22	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29801211--29801438	114	2.0	113	94	2	404	28	7	34	30	1.85
29821026--29821061	2	18.0	2	88	0	54	50	0	5	44	1.25
29821024--29821061	10	3.8	10	96	0	67	50	0	7	42	1.31
29822477--29822552	37	2.1	37	89	0	116	27	28	13	30	1.94
29844307--29844331	3	8.3	3	100	0	50	68	0	0	32	0.90
29853222--29853281	29	2.0	31	93	6	106	43	28	10	18	1.82
29858546--29858593	11	4.1	12	81	10	55	70	0	2	27	0.98
29870660--29870701	22	1.9	22	90	0	66	35	4	16	42	1.69
29873311--29873337	2	13.5	2	100	0	54	48	0	0	51	1.00
29880316--29880502	93	2.0	93	92	0	311	28	17	23	31	1.97
29902479--29902541	13	4.5	14	78	11	67	25	0	1	73	0.93
29902479--29902540	4	15.5	4	75	18	58	25	0	1	72	0.94
29902484--29902534	18	2.7	19	85	14	79	27	0	0	72	0.85
29902484--29902534	9	5.6	9	80	13	59	27	0	0	72	0.85
29902488--29902542	22	2.4	23	87	3	76	27	0	1	70	0.97
29910048--29910166	61	2.0	61	100	0	238	37	15	20	26	1.92
29923353--29923401	20	2.4	20	83	10	55	59	0	0	40	0.98
29923356--29923401	21	2.3	18	85	14	56	58	0	0	41	0.98
29923652--29923699	18	2.7	17	84	12	53	33	0	2	64	1.05
29928796--29928838	16	2.7	15	79	10	50	74	0	0	25	0.82
29940493--29940957	230	2.0	230	90	3	740	33	19	18	28	1.95
29944296--29944341	23	2.0	23	100	0	92	43	21	13	21	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29944785--29944826	3	15.0	3	80	14	54	0	30	2	66	1.04
29946830--29946875	23	2.0	23	100	0	92	26	8	13	52	1.69
29951199--29951433	116	2.0	116	100	0	470	33	22	16	27	1.95
29959169--29959225	28	2.0	28	96	0	105	33	14	8	43	1.76
29959100--29959294	97	2.0	97	96	0	363	26	17	13	43	1.86
29967456--29968546	222	5.0	222	79	11	1344	40	18	12	27	1.87
29967850--29968461	193	3.0	193	86	8	751	40	17	12	29	1.86
29967628--29968461	417	2.0	415	98	0	1614	40	18	12	28	1.87
29968043--29968546	224	2.2	225	97	0	947	41	18	12	27	1.86
29988133--29988238	22	4.9	20	68	22	56	65	1	31	1	1.14
29988192--29988235	17	2.6	17	92	7	72	75	0	22	2	0.92
29988307--29988338	15	2.1	16	94	5	57	84	0	12	3	0.74
29988688--29988730	23	2.0	21	86	9	59	69	6	2	20	1.23
29988754--29988778	2	12.5	2	100	0	50	52	0	0	48	1.00
29991034--29991096	2	32.0	2	93	3	110	49	0	1	49	1.10
29993595--29993636	17	2.5	17	88	7	59	23	0	0	76	0.79
30009138--30009172	3	11.7	3	88	11	54	68	0	31	0	0.90
30009145--30009185	21	2.0	21	85	9	57	68	2	29	0	1.03
30009138--30009179	15	2.9	14	89	7	57	66	2	30	0	1.04
30010397--30010443	6	8.0	6	77	13	53	34	0	2	63	1.06
30010387--30010467	29	2.8	29	82	1	90	37	0	4	58	1.20
30010595--30010654	26	2.4	26	78	18	65	43	3	10	43	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30025349--30025374	13	2.0	13	100	0	52	53	0	0	46	1.00
30039005--30039031	2	13.5	2	100	0	54	51	0	0	48	1.00
30044277--30044442	83	2.0	84	90	1	262	24	23	8	43	1.81
30050531--30050581	24	2.1	24	92	0	84	29	31	23	15	1.95
30054417--30054458	18	2.3	19	87	4	59	45	2	11	40	1.54
30064903--30064932	3	10.0	3	100	0	60	66	0	0	33	0.92
30083862--30083918	2	29.0	2	92	3	98	49	0	0	50	1.00
30093453--30093492	3	13.0	3	94	5	71	32	0	32	35	1.58
30114984--30115053	2	38.0	2	75	21	64	51	0	0	47	1.00
30114987--30115076	44	2.0	45	89	10	141	53	1	0	44	1.08
30128997--30129035	2	19.5	2	89	0	60	0	46	2	51	1.14
30135029--30135070	20	2.2	18	87	8	57	38	0	4	57	1.20
30136021--30136058	2	19.0	2	94	0	67	47	2	0	50	1.15
30166491--30166535	18	2.4	19	82	10	58	26	0	4	68	1.08
30166852--30167125	115	2.4	111	80	10	306	40	0	4	54	1.23
30167084--30167136	25	2.1	25	100	0	106	43	0	0	56	0.99
30167903--30167942	21	2.0	20	85	5	53	42	0	5	52	1.23
30176289--30176314	2	13.0	2	100	0	52	50	0	50	0	1.00
30177772--30177814	23	2.0	21	85	4	50	39	0	2	55	1.13
30177834--30177946	27	4.1	27	69	21	76	45	0	2	51	1.21
30177916--30177962	17	2.6	18	80	6	51	44	0	2	53	1.12
30177667--30178036	179	2.0	175	81	13	414	42	1	3	52	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30189918--30189942	13	1.9	13	100	0	50	92	0	8	0	0.40
30190949--30190992	22	2.0	22	100	0	88	45	4	18	31	1.69
30191371--30191468	49	2.0	49	97	0	187	33	12	25	28	1.92
30197872--30197917	24	1.9	24	86	0	65	54	13	17	15	1.71
30200908--30200959	22	2.4	21	78	15	52	51	0	3	44	1.19
30205631--30205831	100	2.0	100	98	0	384	28	22	13	34	1.92
30206693--30206726	3	11.7	3	87	6	52	70	0	29	0	0.87
30206700--30206726	14	1.9	14	100	0	54	66	0	33	0	0.92
30207180--30207244	9	7.7	9	85	14	86	7	32	1	58	1.36
30207207--30207254	24	2.0	23	92	4	78	4	35	4	56	1.38
30207217--30207268	24	2.2	24	82	0	59	1	42	3	51	1.31
30207248--30207297	25	2.0	25	88	0	73	6	46	4	44	1.47
30207655--30207707	20	2.7	20	81	0	70	41	9	13	35	1.76
30208072--30208109	15	2.5	15	87	8	51	36	13	5	44	1.66
30209985--30210077	46	2.0	46	87	0	132	36	13	17	32	1.89
30238214--30238256	18	2.4	18	80	0	50	48	20	18	11	1.79
30254282--30254335	26	2.0	26	82	7	63	38	1	3	55	1.28
30254298--30254338	14	3.1	14	86	6	50	41	0	2	56	1.13
30254940--30255002	14	4.6	14	74	18	53	39	0	0	60	0.97
30261211--30261243	5	6.6	5	92	0	57	0	15	0	84	0.61
30272227--30272283	3	19.0	3	100	0	114	0	33	0	66	0.92
30272415--30272463	8	6.2	8	86	11	66	48	0	0	48	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30273084--30273284	81	2.5	81	76	9	218	33	8	5	51	1.58
30279668--30279800	69	1.9	68	92	1	221	30	21	17	30	1.96
30281556--30281608	25	2.1	26	82	6	65	18	24	13	43	1.86
30298100--30298153	21	2.6	21	93	0	90	37	51	3	7	1.48
30327767--30327814	19	2.7	18	76	20	55	68	2	2	27	1.11
30335314--30335357	21	2.1	21	82	0	52	11	27	29	31	1.91
30335917--30336014	48	2.0	48	100	0	196	48	8	21	21	1.75
30341341--30341469	65	2.0	65	100	0	258	33	18	12	35	1.88
30343978--30344047	27	2.6	27	86	0	86	40	21	11	27	1.87
30359920--30359954	17	2.1	17	100	0	70	34	37	5	22	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91