genome.fa.s3.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  84  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31950116--31950378	89	3.0	89	88	1	393	34	14	33	17	1.90
31950939--31951059	35	3.5	35	80	4	136	22	14	14	47	1.81
31951499--31951538	20	2.0	20	90	0	62	47	2	0	50	1.14
31951920--31951951	2	16.0	2	100	0	64	50	0	0	50	1.00
31952046--31952101	27	2.1	26	83	9	69	58	10	12	17	1.61
31955491--31955577	29	3.0	28	75	8	77	35	1	3	59	1.22
31956384--31956426	22	2.0	22	85	0	59	30	0	13	55	1.39
31964088--31964171	39	2.2	39	91	0	132	21	15	19	44	1.87
31968002--31968092	9	10.3	9	70	13	55	43	2	1	52	1.20
31968774--31968820	24	2.0	24	82	0	58	31	12	2	53	1.51
31975378--31975457	22	3.7	22	77	3	99	21	10	23	45	1.82
31975469--31975512	23	1.9	23	85	0	61	31	22	11	34	1.90
31975560--31975712	43	3.5	44	77	6	152	42	20	11	24	1.86
31975560--31975711	22	7.0	22	67	7	87	42	21	11	25	1.86
31995479--31995517	21	1.9	20	85	15	53	38	2	2	56	1.27
32002756--32002821	32	2.1	32	91	0	105	48	12	16	22	1.79
32012544--32012569	7	3.7	7	100	0	52	30	30	26	11	1.92
32012875--32012909	17	2.1	17	89	5	54	14	57	0	28	1.38
32014672--32014701	9	3.3	9	95	0	51	66	23	0	10	1.21
32018597--32018662	29	2.3	29	82	10	73	51	1	1	45	1.19
32043301--32043517	72	3.0	72	98	0	418	25	26	14	33	1.94
32044682--32044707	12	2.2	12	100	0	52	34	7	0	57	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32045173--32045430	26	10.5	25	70	17	168	24	13	23	38	1.91
32045136--32045378	73	3.4	71	84	7	289	23	13	23	39	1.90
32045464--32045521	21	2.7	22	78	5	73	50	18	5	25	1.68
32054817--32054888	32	2.2	32	85	2	90	52	5	2	38	1.39
32059477--32059560	44	1.9	44	95	4	152	17	14	25	42	1.87
32065392--32065448	28	2.0	28	100	0	114	49	10	3	36	1.55
32077122--32077168	20	2.3	20	96	0	85	27	14	23	34	1.94
32097315--32097393	39	2.0	41	85	7	108	37	20	16	25	1.93
32097481--32097543	15	4.1	15	75	15	56	65	6	0	28	1.17
32101340--32101385	16	2.8	17	80	9	51	58	0	2	39	1.10
32113152--32113232	42	1.9	42	89	0	126	27	13	17	41	1.87
32117863--32117926	33	2.0	33	85	11	89	39	4	0	56	1.20
32120810--32120854	22	1.9	22	86	13	63	55	0	0	44	0.99
32134999--32135045	20	2.3	21	85	3	69	53	0	6	40	1.27
32135989--32136013	13	1.9	13	100	0	50	48	8	0	44	1.32
32136746--32136785	21	2.0	20	85	9	55	47	10	12	30	1.74
32141917--32141979	30	2.1	30	84	0	81	26	6	39	26	1.80
32149560--32149588	15	1.9	15	100	0	58	72	0	27	0	0.85
32154710--32154748	18	2.1	19	85	4	53	76	2	0	20	0.90
32162410--32162470	30	2.0	31	87	9	90	40	8	1	49	1.42
32163122--32163231	51	2.2	51	96	0	202	14	22	21	40	1.90
32182014--32182062	24	2.0	24	88	7	73	65	0	2	32	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32194282--32194372	42	2.2	42	97	0	173	21	62	4	10	1.45
32194439--32194514	27	2.8	27	83	0	89	25	44	13	17	1.84
32206021--32206659	222	3.0	210	86	6	856	45	3	7	42	1.51
32206593--32206640	22	2.2	23	81	7	64	47	0	8	43	1.33
32206591--32206653	23	2.9	21	77	13	65	47	0	7	44	1.32
32206624--32206669	15	2.8	17	74	16	51	47	2	4	45	1.34
32207962--32207995	15	2.2	16	89	5	52	52	0	0	47	1.00
32208107--32208157	14	3.8	14	75	15	54	43	0	0	56	0.99
32222296--32222330	13	2.8	12	87	8	52	68	8	20	2	1.29
32222296--32222331	12	2.9	12	88	8	54	66	8	19	5	1.38
32224736--32225018	142	2.0	142	93	0	485	44	10	11	33	1.75
32232334--32232383	11	4.6	11	73	12	50	42	2	2	54	1.23
32232343--32232383	21	2.1	19	90	9	64	39	2	2	56	1.26
32233423--32233466	2	22.0	2	95	0	79	50	2	0	47	1.13
32241988--32242352	27	13.4	27	70	7	121	40	10	8	40	1.70
32241985--32242163	80	2.2	82	79	7	179	40	12	10	36	1.77
32242056--32242339	55	5.2	55	78	3	295	40	9	8	42	1.67
32242056--32242380	110	3.0	110	84	1	411	40	8	8	42	1.66
32242054--32242377	55	5.9	54	75	4	272	39	8	8	42	1.66
32242046--32242388	27	12.5	27	71	7	181	39	8	7	43	1.65
32242864--32242914	20	2.5	20	78	6	50	56	3	1	37	1.29
32243225--32243260	18	2.1	17	89	5	54	11	8	0	80	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32257720--32257756	16	2.3	16	90	0	56	45	5	5	43	1.49
32258060--32258136	33	2.3	33	77	4	84	45	1	1	51	1.17
32269672--32269735	29	2.2	29	86	2	85	25	10	23	40	1.87
32269672--32269754	28	2.9	29	84	7	91	24	8	19	48	1.76
32273528--32273601	29	2.5	31	75	22	77	50	1	8	40	1.41
32275174--32275222	6	7.7	6	78	13	53	22	0	0	77	0.77
32275174--32275222	13	3.8	13	76	7	55	22	0	0	77	0.77
32275169--32275255	33	2.6	33	90	1	129	27	1	1	70	1.02
32275281--32275360	5	16.2	5	70	17	60	25	2	0	72	0.97
32275228--32275363	55	2.7	49	77	17	134	27	3	0	68	1.06
32275289--32275352	33	2.0	32	90	9	103	23	3	0	73	0.97
32275228--32275349	28	4.4	28	66	26	73	28	4	0	67	1.09
32276115--32276153	11	3.2	12	82	10	53	0	15	2	82	0.79
32276115--32276153	12	3.4	11	82	10	51	0	15	2	82	0.79
32279626--32279686	30	2.0	30	100	0	122	40	16	22	19	1.90
32280263--32280322	29	2.1	29	81	12	70	28	10	10	51	1.67
32283669--32283756	30	2.9	30	94	1	149	11	26	17	45	1.81
32285051--32285107	23	2.4	22	82	11	60	54	24	8	12	1.65
32291310--32291354	17	2.7	16	83	10	54	71	0	0	28	0.87
32291317--32291354	18	2.1	18	90	0	58	78	0	0	21	0.74
32291560--32291618	6	9.5	6	75	17	50	5	11	1	81	0.93
32291559--32291618	12	4.9	11	75	18	57	5	11	1	81	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32291559--32291610	23	2.3	22	80	9	59	5	11	1	80	0.96
32304517--32304577	5	11.4	5	77	11	50	73	0	1	24	0.92
32304517--32304577	16	3.8	16	76	8	61	73	0	1	24	0.92
32304517--32304577	27	2.3	27	82	0	77	73	0	1	24	0.92
32304517--32304637	42	2.9	39	72	20	93	63	0	4	31	1.19
32304708--32304761	26	2.1	25	83	10	65	31	0	1	66	1.02
32304701--32304761	20	3.0	20	80	4	59	34	1	1	62	1.15
32304732--32304777	20	2.4	19	82	17	60	39	0	0	60	0.97
32305389--32305426	11	3.5	11	89	3	51	18	55	0	26	1.43
32312860--32312897	12	3.2	12	81	7	51	71	2	0	26	1.00
32317737--32317770	14	2.5	13	86	9	50	67	5	0	26	1.13
32319754--32319799	23	1.9	25	86	8	69	65	0	2	32	1.05
32324210--32324289	33	2.4	33	87	0	106	66	1	3	28	1.17
32330368--32330410	22	2.0	22	100	0	86	27	27	20	23	1.99
32332825--32332960	36	4.0	36	80	16	191	36	15	25	22	1.94
32332868--32332923	27	2.1	27	96	0	103	32	14	30	23	1.94
32332832--32332959	63	2.0	63	96	0	238	35	14	27	22	1.94
32334151--32334321	85	2.0	86	90	3	274	35	14	16	34	1.88
32334801--32334845	22	2.0	22	84	16	58	40	4	2	53	1.33
32353910--32354271	190	1.9	190	85	4	498	47	4	6	41	1.49
32362085--32362134	25	2.0	26	96	4	93	58	0	0	42	0.98
32362086--32362174	22	3.9	22	75	12	81	53	3	0	42	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32366809--32366856	21	2.3	21	92	0	78	33	16	6	43	1.73
32379829--32379868	21	1.9	21	84	0	53	40	12	22	25	1.89
32399511--32399543	2	16.5	2	93	0	57	0	51	0	48	1.00
32399591--32399623	2	16.5	2	93	0	57	0	51	0	48	1.00
32399473--32399624	80	1.9	79	100	0	295	11	41	3	42	1.60
32408363--32408405	2	21.5	2	95	0	77	51	2	0	46	1.13
32426095--32426144	26	1.9	26	91	0	82	42	8	0	50	1.32
32429474--32429844	202	1.8	202	94	0	661	26	15	17	40	1.89
32441534--32442191	344	1.9	340	81	6	801	30	11	19	39	1.86
32448262--32448292	11	2.8	11	100	0	62	38	0	6	54	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91