genome.fa.s3.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  42  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14460892--14460938	2	24.0	2	79	12	53	51	4	0	44	1.21
14463106--14463134	2	14.5	2	100	0	58	51	48	0	0	1.00
14463927--14464103	73	2.4	73	89	1	275	37	19	20	22	1.94
14473786--14473823	20	1.9	20	100	0	76	44	21	5	28	1.73
14482172--14482213	21	2.0	21	85	0	57	35	19	26	19	1.95
14486171--14486399	60	3.8	60	89	1	336	24	32	18	24	1.97
14486943--14487091	58	2.6	57	84	3	190	2	36	4	56	1.32
14487174--14487212	12	3.1	13	85	14	55	2	35	0	61	1.10
14487239--14487268	11	2.6	12	94	5	53	0	30	0	70	0.88
14491214--14491377	37	4.2	37	84	11	220	26	8	37	27	1.85
14491257--14491349	45	2.1	45	95	0	168	25	7	37	29	1.83
14491220--14491377	82	1.9	82	93	0	271	26	8	37	27	1.86
14493890--14493978	39	2.3	39	82	7	101	33	23	20	22	1.97
14504930--14504989	28	2.2	27	81	3	66	53	3	3	40	1.34
14504942--14505001	27	2.2	28	82	8	70	55	3	1	40	1.27
14505481--14505510	11	2.7	11	100	0	60	60	0	0	40	0.97
14514912--14514953	18	2.3	19	80	12	52	26	23	23	26	2.00
14529542--14529648	35	3.1	35	83	1	135	28	30	13	28	1.94
14530775--14530834	20	3.0	20	82	2	59	33	5	40	21	1.75
14530783--14530834	20	2.6	20	84	0	68	30	3	42	23	1.72
14534686--14534844	80	2.0	79	96	0	282	32	14	11	40	1.83
14538039--14538076	19	2.0	19	100	0	76	42	10	10	36	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14539780--14539922	35	4.1	35	89	0	196	28	30	9	31	1.88
14542892--14542994	38	2.6	40	87	3	147	21	40	17	20	1.91
14542892--14542990	19	5.1	19	62	13	58	20	40	18	21	1.92
14545704--14545849	31	4.7	31	92	0	238	26	15	19	39	1.90
14549806--14549842	2	18.5	2	100	0	74	48	0	0	51	1.00
14552567--14552601	18	2.0	17	88	5	52	25	2	28	42	1.69
14554772--14554929	86	1.8	86	88	0	244	25	18	29	25	1.98
14554972--14555032	31	2.0	31	83	0	77	24	18	34	22	1.96
14554835--14555255	118	3.6	118	82	1	472	24	18	28	28	1.98
14557447--14557710	145	1.8	145	82	1	341	29	16	21	32	1.95
14571845--14571978	31	4.3	31	87	1	180	40	20	14	25	1.90
14571842--14571978	62	2.2	62	90	2	213	39	19	14	26	1.90
14572688--14572768	23	3.5	24	74	15	89	23	32	18	25	1.97
14572614--14573012	47	8.6	47	82	4	425	25	32	15	26	1.95
14572688--14572862	23	7.5	23	65	11	79	25	32	16	26	1.96
14572807--14572929	24	5.2	24	66	7	81	26	33	14	25	1.94
14572925--14573001	23	3.3	23	65	3	64	22	28	18	31	1.97
14576713--14576814	38	2.6	40	82	3	118	24	16	37	21	1.94
14585436--14585478	19	2.3	18	80	4	50	51	0	6	41	1.29
14585838--14585878	2	22.0	2	80	14	52	56	0	0	43	0.99
14585833--14585878	23	2.1	23	84	8	60	58	0	0	41	0.98
14594587--14594658	37	1.9	37	82	0	90	20	29	22	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14600785--14600903	43	2.8	43	85	2	150	21	35	18	24	1.96
14605223--14605550	164	2.0	164	96	0	611	33	20	9	36	1.85
14607117--14607248	43	3.1	43	79	0	156	21	34	17	27	1.95
14608390--14608482	35	2.7	35	89	0	141	21	10	25	41	1.85
14608390--14608521	35	3.8	33	77	15	115	23	9	27	39	1.86
14608390--14608532	70	2.0	70	81	5	164	23	9	27	39	1.86
14608550--14608631	34	2.4	34	80	13	98	23	14	29	32	1.94
14608760--14608800	5	8.6	5	86	2	50	75	0	21	2	0.92
14611702--14611743	19	2.2	19	87	8	59	45	9	33	11	1.73
14612540--14612614	32	2.3	32	77	9	80	32	8	25	34	1.85
14615790--14615875	34	2.5	35	86	3	120	24	11	26	37	1.90
14616176--14616210	5	6.8	5	87	6	52	80	0	17	2	0.84
14624516--14624555	2	20.0	2	94	0	71	52	0	0	47	1.00
14625091--14625208	34	3.4	34	91	3	184	30	11	25	33	1.90
14625091--14625234	34	4.2	33	86	7	148	31	12	25	31	1.92
14625091--14625234	68	2.1	68	82	11	170	31	12	25	31	1.92
14625370--14625437	5	13.2	5	79	11	75	73	1	25	0	0.92
14628414--14628578	68	2.4	67	79	6	163	36	15	7	40	1.77
14631417--14631542	43	3.0	42	86	5	182	24	19	33	23	1.97
14632910--14633012	38	2.6	40	87	3	147	23	42	16	17	1.88
14636557--14636656	53	1.9	50	82	6	119	30	18	20	32	1.96
14643240--14643452	54	3.9	54	86	2	311	20	14	38	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14644218--14644327	53	2.1	50	81	5	121	33	14	20	31	1.92
14644853--14645000	69	2.1	69	86	2	199	27	19	23	29	1.98
14644869--14645038	69	2.5	69	81	3	182	25	23	19	31	1.98
14647338--14647446	42	2.6	42	85	1	137	27	18	33	21	1.96
14647924--14647960	19	1.9	19	94	0	65	32	27	18	21	1.97
14659462--14659516	23	2.4	23	93	0	92	32	45	1	20	1.61
14659525--14659634	43	2.6	43	85	2	141	22	34	16	26	1.95
14662722--14662778	2	28.0	2	89	3	87	47	1	1	49	1.22
14679117--14679155	20	2.0	20	89	0	60	38	20	2	38	1.66
14686965--14687061	49	2.0	49	93	0	167	22	35	15	26	1.94
14698806--14698856	2	26.0	2	88	11	79	49	1	0	49	1.12
14700075--14700144	35	2.0	34	83	2	86	32	27	11	28	1.91
14700607--14700766	73	2.2	73	83	4	189	23	16	17	43	1.88
14702155--14702329	42	4.1	42	85	3	226	26	16	32	25	1.96
14703924--14703969	20	2.3	21	88	11	78	23	23	13	39	1.90
14704756--14704877	43	2.8	43	78	2	129	27	17	35	20	1.95
14705252--14705400	60	2.5	60	82	0	172	25	18	22	33	1.97
14709688--14709917	54	4.3	54	82	2	275	19	12	37	30	1.88
14719431--14719467	2	18.5	2	100	0	74	51	0	0	48	1.00
14722458--14722569	43	2.6	43	83	4	145	23	17	35	23	1.95
14722942--14723106	60	2.7	59	84	3	204	25	18	20	35	1.95
14747507--14747639	42	3.1	42	93	3	223	22	17	36	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14749959--14749990	16	2.0	16	93	0	55	12	3	18	65	1.38
14751168--14751313	42	3.4	42	82	1	139	23	14	26	35	1.93
14751168--14751330	42	3.8	42	78	4	114	23	14	24	37	1.92
14752191--14752222	2	17.0	2	87	12	50	50	0	0	50	1.00
14752252--14752332	33	2.4	35	79	10	87	35	28	11	24	1.90
14754999--14755117	43	2.8	43	89	2	177	21	21	37	19	1.94
14755009--14755130	43	2.8	43	88	2	174	22	18	39	18	1.92
14755116--14755178	20	3.2	20	90	2	101	25	3	41	30	1.71
14755191--14755225	2	17.5	2	93	0	61	48	2	0	48	1.16
14757727--14757764	20	1.9	20	88	0	58	28	13	15	42	1.85
14761068--14761105	20	2.1	19	85	14	53	44	23	2	28	1.67
14763986--14764023	2	19.0	2	94	0	67	50	2	0	47	1.15
14768571--14768678	43	2.5	43	86	0	144	21	19	38	20	1.93
14768728--14768773	2	23.0	2	90	0	74	45	0	4	50	1.21
14769072--14769117	21	2.2	21	84	7	58	23	26	21	28	1.99
14770466--14770613	66	2.2	67	86	3	201	35	10	20	33	1.87
14771584--14771632	25	2.0	25	87	0	71	26	28	26	18	1.98
14783279--14783306	11	2.5	11	100	0	56	53	14	0	32	1.41
14789080--14789110	12	2.6	12	94	0	53	35	22	3	38	1.71
14790504--14790535	11	2.8	12	86	13	50	75	0	0	25	0.81
14790483--14790523	21	2.0	21	85	0	55	60	0	2	36	1.10
14790504--14790555	15	3.3	15	74	12	50	73	1	3	21	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14790576--14790615	16	2.5	16	80	15	55	37	2	35	25	1.69
14790586--14790617	16	2.1	16	94	5	57	31	3	37	28	1.73
14790858--14790975	14	8.8	13	72	22	68	29	1	6	61	1.31
14790895--14790930	13	2.8	13	91	4	56	33	0	5	61	1.19
14790937--14790974	12	2.9	13	84	11	51	31	0	5	63	1.17
14790955--14791008	25	2.3	22	87	9	72	22	0	7	70	1.12
14790942--14791001	13	4.8	12	74	15	50	26	0	8	65	1.21
14792188--14792221	12	2.8	12	81	0	50	23	20	0	55	1.43
14792444--14792532	21	4.2	21	86	1	106	29	19	13	38	1.89
14794208--14794300	46	2.0	46	93	0	159	43	12	9	34	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91