genome.fa.s3.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  61  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21978769--21978815	22	2.1	23	88	4	69	44	14	27	12	1.82
21983567--21983634	18	3.9	18	77	11	79	33	16	38	11	1.85
21983560--21983632	33	2.2	33	100	0	146	31	15	41	12	1.84
21983562--21983614	15	3.3	15	75	14	61	32	15	43	9	1.78
21986322--21986793	236	2.0	236	83	0	604	34	18	18	28	1.94
21991675--21991727	19	2.8	19	88	5	72	58	0	5	35	1.22
21993216--21993309	36	2.6	36	91	0	152	15	10	47	25	1.78
21993253--21993498	75	3.3	72	76	13	200	21	12	38	28	1.89
21993289--21993498	36	5.7	36	87	5	269	21	12	37	29	1.90
21996614--21996657	18	2.5	17	85	10	61	38	4	0	56	1.20
21997206--21997275	21	3.3	22	74	8	81	40	8	7	44	1.62
21997228--21997288	21	3.0	20	72	9	59	42	9	6	40	1.64
21997204--21997288	42	2.0	42	95	0	152	40	9	7	43	1.64
21999620--21999653	3	11.3	3	100	0	68	67	0	0	32	0.91
21999652--21999677	3	8.7	3	100	0	52	34	0	0	65	0.93
22001465--22001510	15	3.3	15	70	17	53	32	2	4	60	1.28
22002112--22002193	28	3.0	27	89	1	119	32	18	19	29	1.95
22005051--22005130	42	2.0	41	82	7	101	38	18	15	27	1.91
22005413--22005458	18	2.6	18	89	0	74	45	21	10	21	1.82
22008617--22008888	136	2.0	136	89	1	420	26	16	9	47	1.76
22009808--22009838	16	2.0	16	93	6	55	64	0	0	35	0.94
22010226--22010273	13	3.3	15	72	27	50	75	0	2	22	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22010225--22010278	20	2.7	20	86	13	67	72	0	1	25	0.95
22010232--22010278	12	3.7	13	80	11	53	74	0	0	25	0.82
22010735--22010772	20	1.9	20	84	10	51	52	2	7	36	1.45
22015356--22015412	16	3.6	16	80	0	69	15	21	26	36	1.93
22023425--22023484	18	3.3	18	73	17	61	75	1	21	1	0.99
22023425--22023487	26	2.3	28	81	10	69	76	1	20	1	0.96
22023431--22023487	8	6.9	8	78	7	60	77	1	19	1	0.95
22024409--22024488	31	2.6	30	84	4	97	52	7	8	31	1.60
22025163--22025268	30	3.6	30	81	7	110	35	3	1	58	1.27
22036697--22036739	2	21.5	2	80	0	50	46	6	0	46	1.30
22037033--22037105	36	2.0	36	91	0	119	17	16	30	35	1.92
22053354--22053459	38	2.8	38	94	0	176	22	33	16	28	1.95
22056292--22056324	17	1.9	17	88	11	50	42	15	3	39	1.62
22056500--22056641	29	4.9	28	79	6	149	37	13	10	38	1.79
22056476--22056639	59	2.8	58	82	5	177	41	12	9	37	1.74
22071800--22071824	13	1.9	13	100	0	50	48	0	0	52	1.00
22074339--22074411	21	3.3	21	83	9	85	34	0	9	56	1.32
22074372--22074428	21	2.9	19	82	12	55	33	0	12	54	1.38
22079099--22079161	29	2.1	29	85	2	81	26	12	25	34	1.92
22079098--22079186	30	2.8	31	78	14	92	25	12	25	35	1.91
22085374--22085407	17	2.0	17	100	0	68	17	0	0	82	0.67
22092604--22092728	42	3.0	42	87	0	187	20	21	34	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22113599--22113669	14	5.1	13	73	18	54	21	5	0	73	1.04
22113588--22113664	16	4.5	17	75	15	61	25	5	0	68	1.10
22113755--22113818	14	4.6	14	73	23	64	25	1	0	73	0.92
22113757--22113818	23	3.0	20	74	19	56	24	1	0	74	0.91
22113755--22113800	16	2.9	16	79	20	53	26	2	0	71	0.97
22113755--22113818	17	3.5	17	76	8	56	25	1	0	73	0.92
22115573--22115602	13	2.3	13	100	0	60	13	0	13	73	1.10
22139989--22140021	16	2.1	16	94	0	57	21	6	30	42	1.77
22142100--22142149	25	2.0	25	100	0	100	36	20	12	32	1.89
22144279--22144337	26	2.3	26	79	5	66	66	3	28	1	1.18
22149069--22149103	17	2.1	17	88	0	52	54	8	25	11	1.64
22152565--22152609	18	2.6	17	86	6	56	24	0	0	75	0.80
22152573--22152623	26	2.0	26	84	7	68	23	1	0	74	0.92
22152570--22152624	12	4.3	13	74	19	53	23	1	0	74	0.91
22153030--22153074	21	2.1	23	84	12	60	28	2	6	62	1.33
22153745--22153796	22	2.4	22	80	0	68	71	0	28	0	0.87
22153962--22154013	9	6.0	8	81	18	52	82	0	15	1	0.75
22153962--22154013	18	2.9	17	83	13	61	82	0	15	1	0.75
22153975--22154014	16	2.6	16	88	4	64	85	0	15	0	0.61
22154038--22154077	10	3.8	10	84	12	53	85	0	10	5	0.75
22154125--22154169	23	2.0	23	86	0	63	44	24	24	6	1.77
22154618--22154645	12	2.3	12	100	0	56	85	0	0	14	0.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22154616--22154648	17	2.0	16	94	5	57	84	0	0	15	0.61
22154885--22155065	60	3.0	60	86	3	249	24	18	33	23	1.96
22159131--22159189	2	31.0	2	83	16	81	52	0	1	45	1.10
22160740--22160798	23	2.6	23	87	10	86	79	0	20	0	0.73
22160740--22160799	26	2.4	25	89	10	95	78	0	21	0	0.75
22160815--22160869	29	1.9	29	85	10	78	80	0	16	3	0.86
22162402--22162605	35	6.1	34	72	11	152	23	12	27	36	1.90
22162405--22162633	35	6.9	32	71	14	142	24	12	27	36	1.91
22162405--22162647	134	1.8	134	88	3	373	24	11	27	36	1.90
22162405--22162647	67	3.6	67	87	2	337	24	11	27	36	1.90
22163508--22163688	60	3.0	60	85	3	249	24	18	33	24	1.97
22171043--22171073	14	2.2	14	94	0	53	48	22	6	22	1.73
22173512--22173561	24	2.1	24	84	0	64	30	14	2	54	1.51
22173649--22174009	175	2.1	173	89	3	555	48	23	4	22	1.70
22188233--22188379	47	3.1	47	89	2	213	46	12	2	38	1.56
22188233--22188379	48	3.1	47	88	3	197	46	12	2	38	1.56
22189473--22189545	21	3.5	21	69	14	60	49	4	1	45	1.29
22193698--22193744	21	2.2	22	96	3	87	27	29	25	17	1.97
22195362--22195418	28	2.0	29	89	3	89	31	19	15	33	1.93
22202961--22202997	19	1.9	19	100	0	74	27	0	29	43	1.55
22204444--22204676	115	2.0	117	91	1	380	21	20	33	24	1.97
22215363--22215406	22	2.0	22	95	0	79	43	22	2	31	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22217707--22217759	28	1.9	27	88	11	81	32	20	15	32	1.93
22218355--22218384	15	1.9	16	93	6	53	66	6	6	20	1.38
22222031--22222141	37	3.1	37	89	10	194	26	13	5	54	1.60
22222033--22222136	33	3.0	33	94	5	172	26	12	5	54	1.60
22227382--22227484	23	4.4	23	71	11	84	23	14	14	47	1.81
22238345--22238408	28	2.3	28	91	0	101	37	4	39	18	1.72
22238852--22238926	34	2.2	34	83	4	98	50	9	24	16	1.73
22240515--22240546	3	10.7	3	100	0	64	0	0	31	68	0.90
22240545--22240579	3	11.7	3	100	0	70	0	31	0	68	0.90
22241006--22241034	2	14.5	2	100	0	58	0	48	0	51	1.00
22256959--22257023	32	2.0	32	84	0	85	32	20	23	24	1.98
22261296--22261352	30	1.9	29	89	3	87	22	19	8	49	1.76
22262464--22262640	41	4.3	41	89	2	221	42	20	6	30	1.76
22265944--22265992	2	24.5	2	100	0	98	51	0	0	48	1.00
22266620--22266888	72	3.7	72	86	1	378	29	19	11	39	1.87
22279402--22279502	28	3.7	25	69	18	76	69	0	0	29	0.95
22279396--22279500	18	5.8	18	72	18	67	70	0	0	28	0.94
22279401--22279510	17	6.1	18	72	18	77	68	0	0	30	0.96
22280362--22280432	26	2.7	25	81	12	81	71	0	2	25	0.99
22280777--22280814	7	5.6	7	85	14	53	73	0	0	26	0.83
22280762--22280815	17	3.2	17	77	15	58	72	0	1	25	0.95
22280777--22280818	21	2.0	20	95	4	75	73	0	0	26	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22290709--22290882	62	2.8	62	95	0	321	30	12	22	34	1.91
22292612--22292646	2	17.5	2	100	0	70	51	0	0	48	1.00
22292807--22292836	16	1.9	15	93	6	51	76	0	0	23	0.78
22302480--22302582	29	3.6	29	80	5	109	45	4	26	23	1.72
22303562--22303633	14	5.2	13	75	21	67	44	0	0	55	0.99
22303567--22303619	26	2.1	26	86	10	74	43	0	0	56	0.99
22303938--22303973	18	2.1	18	89	5	56	2	22	0	75	0.94
22304318--22304358	21	2.0	21	85	0	55	26	7	0	65	1.18
22308959--22308986	2	14.0	2	100	0	56	0	50	0	50	1.00
22310730--22310768	19	2.1	19	100	0	78	23	15	35	25	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91