genome.fa.s3.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  65  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23455669--23455724	29	1.9	29	92	0	94	62	1	1	33	1.16
23458408--23458582	44	4.0	44	97	1	327	13	32	13	41	1.83
23458514--23458583	21	3.2	21	64	28	56	11	35	12	40	1.80
23465771--23465800	16	1.9	15	93	6	51	63	3	0	33	1.11
23470205--23470233	2	14.5	2	100	0	58	51	0	0	48	1.00
23472819--23472844	2	13.0	2	100	0	52	50	0	0	50	1.00
23496190--23496275	15	5.7	15	83	0	82	29	47	8	15	1.73
23496190--23496280	30	3.0	30	81	0	101	29	48	7	14	1.71
23496186--23496278	45	2.1	45	85	0	123	29	48	8	13	1.73
23499598--23499630	2	16.5	2	100	0	66	51	0	0	48	1.00
23516724--23516786	27	2.3	27	100	0	126	28	49	17	4	1.67
23517227--23517277	25	2.1	24	85	10	68	45	0	0	54	0.99
23517523--23517646	63	2.0	63	88	0	185	20	30	13	34	1.92
23517992--23518050	31	1.9	31	96	0	109	28	16	13	40	1.87
23518006--23518093	43	2.0	43	88	0	131	28	14	11	45	1.80
23518049--23518123	31	2.4	31	88	0	114	28	16	13	42	1.85
23521935--23522282	118	3.0	116	82	4	405	24	20	26	28	1.99
23524388--23524741	145	2.4	145	85	1	460	29	18	20	30	1.97
23526127--23526356	31	7.4	31	86	1	282	39	18	15	26	1.90
23526780--23526814	7	5.0	7	100	0	70	42	0	42	14	1.45
23527051--23527157	46	2.3	47	81	1	135	27	31	16	24	1.96
23527173--23527273	23	4.4	23	73	5	96	25	36	10	26	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23538674--23538749	38	2.0	38	94	0	134	32	10	13	43	1.78
23540465--23540572	35	3.1	34	73	7	94	49	12	11	27	1.74
23544452--23544542	28	3.2	30	83	12	111	17	10	8	62	1.52
23556166--23556345	93	1.9	92	82	3	218	37	17	6	37	1.76
23558754--23558809	28	2.0	29	82	10	71	21	21	3	53	1.61
23563801--23563903	38	2.6	39	82	8	120	24	39	14	21	1.91
23566735--23566806	33	2.1	35	89	5	112	68	6	13	11	1.39
23567099--23567146	15	3.2	15	75	0	51	18	10	29	41	1.84
23588736--23588785	25	2.0	25	92	0	82	64	4	26	6	1.35
23589949--23589983	11	3.4	11	88	11	56	80	0	11	8	0.92
23591239--23591316	39	2.0	39	89	0	120	23	32	7	37	1.83
23592153--23592453	150	2.0	150	99	0	593	38	17	15	27	1.91
23592797--23592866	35	2.0	36	86	8	99	32	24	12	30	1.93
23594690--23594760	30	2.4	30	83	4	90	53	7	4	35	1.48
23595713--23595767	22	2.7	20	80	5	65	43	1	1	52	1.22
23596103--23596141	21	2.0	20	90	10	62	48	0	0	51	1.00
23598818--23598843	2	13.0	2	100	0	52	0	50	0	50	1.00
23599177--23599322	73	2.0	73	97	0	274	24	15	23	36	1.93
23603376--23603449	28	2.6	28	89	4	96	22	17	20	39	1.92
23603516--23603616	26	3.9	26	74	7	98	30	14	14	39	1.87
23603525--23603623	51	1.9	51	91	0	162	31	13	16	39	1.86
23605320--23605350	16	1.9	16	100	0	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23605324--23605358	18	1.9	18	94	0	61	45	0	0	54	0.99
23605432--23605459	2	14.0	2	100	0	56	50	0	0	50	1.00
23608877--23608903	4	6.8	4	100	0	54	0	22	0	77	0.76
23620115--23620189	33	2.2	34	79	11	84	25	5	0	69	1.09
23620287--23620361	9	8.4	9	77	16	59	22	0	1	76	0.87
23620289--23620357	17	3.9	18	81	5	70	24	0	1	73	0.91
23620523--23620572	13	4.0	13	82	10	68	26	0	0	74	0.83
23620525--23620571	24	2.0	24	86	0	67	25	0	0	74	0.82
23620550--23620640	40	2.2	42	80	20	104	27	1	4	67	1.17
23620561--23620650	36	2.4	36	78	20	96	26	1	4	67	1.16
23621392--23621602	62	3.4	62	85	0	224	25	43	12	18	1.86
23629344--23629446	2	53.0	2	77	12	90	46	3	3	44	1.40
23634596--23634630	7	5.0	7	89	0	52	0	28	0	71	0.86
23642560--23642626	29	2.3	29	82	12	84	53	10	22	13	1.69
23643763--23643843	14	5.9	14	72	21	55	25	4	0	69	1.09
23643777--23643850	13	5.3	13	73	13	58	21	5	0	72	1.04
23643942--23643989	15	3.1	15	85	5	69	27	2	0	70	0.98
23643940--23644009	14	5.3	13	75	13	63	27	1	0	71	0.94
23643939--23644009	8	8.8	8	71	13	56	28	1	0	70	0.96
23643963--23644009	23	2.0	25	91	8	80	27	0	0	72	0.85
23644855--23644891	3	12.7	3	94	5	67	29	0	0	70	0.88
23646086--23646136	6	8.5	6	79	12	52	19	0	0	80	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23646073--23646122	23	2.2	23	82	7	57	14	6	0	80	0.90
23646086--23646137	14	3.8	13	79	18	52	19	0	0	80	0.71
23646093--23646137	23	2.0	23	90	0	72	20	0	0	80	0.72
23649114--23649142	2	14.5	2	100	0	58	48	0	0	51	1.00
23650010--23650072	31	2.0	31	84	6	83	19	22	17	41	1.90
23652355--23653359	503	2.0	508	94	2	1750	35	16	17	30	1.92
23655409--23656153	372	2.0	372	100	0	1490	24	29	11	35	1.90
23662015--23662141	30	4.2	30	88	0	173	14	29	24	32	1.94
23663794--23663883	32	2.8	32	81	11	103	47	12	18	21	1.81
23667417--23667456	15	2.7	15	81	11	55	22	10	22	45	1.82
23669059--23669103	12	3.8	11	78	16	54	73	2	2	22	1.05
23669059--23669125	24	2.7	24	80	13	73	73	1	4	20	1.09
23669107--23669140	16	2.2	16	89	5	52	70	0	14	14	1.17
23670778--23670823	21	2.1	23	88	8	69	47	4	6	41	1.49
23679775--23679803	13	2.2	13	100	0	58	31	13	10	44	1.78
23693162--23693195	2	17.0	2	100	0	68	50	0	50	0	1.00
23706272--23706309	20	1.9	20	84	10	51	39	5	23	31	1.77
23718492--23718521	14	2.1	15	93	6	53	80	0	6	13	0.91
23718567--23718611	23	2.0	23	86	8	65	55	0	0	44	0.99
23718572--23718644	30	2.5	31	80	13	82	50	1	0	47	1.09
23718601--23718654	24	2.2	25	87	6	76	44	1	0	53	1.11
23718630--23718668	15	2.6	15	87	0	60	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23718616--23718679	20	3.3	19	72	21	60	42	0	0	57	0.98
23718741--23718775	16	2.2	16	89	0	52	51	2	2	42	1.31
23718760--23718849	27	3.1	28	80	15	103	47	1	2	48	1.21
23720125--23720168	22	2.0	22	86	8	63	20	25	4	50	1.67
23724729--23724766	20	2.0	20	89	5	60	42	15	0	42	1.47
23746419--23746454	17	2.1	17	94	0	63	47	13	13	25	1.80
23756272--23756307	13	2.8	13	100	0	72	38	8	22	30	1.83
23758556--23758693	48	2.9	48	82	5	163	36	15	15	31	1.89
23761670--23761844	48	3.7	48	87	6	239	36	16	16	30	1.91
23761678--23761877	48	4.2	48	83	5	151	37	17	15	30	1.90
23761670--23761877	95	2.2	95	80	6	235	36	17	15	29	1.92
23764498--23764543	24	2.0	24	91	4	76	6	6	2	84	0.84
23778780--23778891	43	2.6	43	83	4	136	26	19	33	20	1.97
23778901--23778960	23	2.6	23	89	0	84	26	1	38	33	1.67
23778967--23779001	2	17.5	2	93	0	61	48	2	0	48	1.16
23780632--23780673	21	2.0	21	90	4	68	35	7	30	26	1.83
23781270--23781331	25	2.5	27	77	17	71	37	1	1	59	1.17
23788752--23788791	21	1.9	21	84	0	53	35	22	12	30	1.91
23792743--23792790	23	2.1	23	88	0	69	27	10	6	56	1.57
23799387--23799443	18	3.2	18	95	2	98	8	12	28	50	1.69
23802759--23802823	30	2.2	30	83	5	80	43	16	9	30	1.80
23808389--23808425	19	1.9	19	100	0	74	43	29	0	27	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23808389--23808437	19	2.6	19	90	6	73	46	26	0	26	1.53
23812234--23812258	13	1.9	13	100	0	50	48	8	0	44	1.32
23813611--23813649	19	2.1	19	95	0	69	41	30	0	28	1.57
23818888--23819056	72	2.3	73	88	1	241	38	24	17	19	1.93
23821937--23821974	20	1.9	20	94	0	67	44	15	0	39	1.47
23824121--23824145	13	1.9	13	100	0	50	48	8	0	44	1.32
23825489--23825526	19	2.0	19	89	0	58	39	28	2	28	1.70
23832005--23832097	13	6.6	13	72	17	71	22	3	3	70	1.16
23831998--23832117	58	2.0	60	82	9	149	22	5	3	69	1.23
23832190--23832257	14	5.3	13	76	18	63	26	1	0	72	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91