genome.fa.s3.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  63  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22725977--22726297	83	3.9	83	91	0	507	20	31	19	28	1.97
22725944--22726296	43	8.4	43	82	6	420	20	31	18	28	1.97
22731738--22731781	17	2.5	17	85	7	52	43	9	15	31	1.79
22731751--22731784	17	2.0	17	100	0	68	41	5	17	35	1.74
22732445--22732489	23	2.0	23	86	8	65	60	4	28	6	1.42
22734125--22734181	29	2.0	29	92	0	96	21	15	12	50	1.76
22734353--22734443	36	2.5	36	82	3	103	12	15	23	49	1.77
22734419--22734556	72	1.9	71	80	5	161	11	18	23	46	1.81
22734464--22734561	36	2.7	36	80	0	115	10	18	24	46	1.79
22734575--22734722	72	2.1	72	80	0	161	16	25	17	40	1.90
22735409--22735447	20	2.0	20	94	0	69	64	7	0	28	1.21
22736679--22736713	18	1.9	18	88	0	52	62	5	2	28	1.32
22738441--22738497	30	1.9	30	85	7	80	26	14	8	50	1.71
22750121--22750235	2	58.0	2	88	8	173	48	1	0	48	1.11
22750971--22751002	12	2.7	12	90	0	55	0	25	0	75	0.81
22760263--22760326	32	1.9	34	84	6	87	59	1	31	7	1.35
22760610--22760703	34	2.7	34	80	6	109	25	13	27	32	1.94
22760607--22760851	115	2.1	115	93	0	418	27	11	25	35	1.90
22760976--22761005	12	2.6	11	90	10	51	86	0	13	0	0.57
22760975--22761008	17	2.0	17	88	11	52	82	0	17	0	0.67
22760981--22761009	14	2.1	14	100	0	58	86	0	13	0	0.58
22760976--22761046	9	7.3	10	72	15	51	76	1	21	1	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22764873--22765007	72	1.9	72	81	6	166	23	19	22	34	1.96
22769429--22769705	139	2.0	137	94	5	488	37	5	2	53	1.40
22770544--22770609	22	3.1	22	77	16	68	39	0	0	60	0.97
22770734--22770772	21	2.0	20	85	14	55	38	0	0	61	0.96
22771462--22771519	25	2.4	25	80	16	68	74	0	10	15	1.08
22772168--22772205	19	2.1	19	85	5	51	44	0	26	28	1.54
22777535--22777575	21	1.9	22	90	5	66	51	7	24	17	1.70
22777535--22777581	21	2.2	21	84	3	58	55	8	21	14	1.66
22786498--22786559	32	1.9	32	100	0	124	38	17	14	29	1.89
22789768--22789806	21	1.9	20	94	5	69	20	17	25	35	1.95
22800345--22800447	38	2.6	39	84	6	129	20	15	40	23	1.90
22800345--22800450	40	2.7	38	85	5	133	20	15	40	23	1.90
22806694--22806897	47	4.3	47	82	1	201	31	12	15	40	1.85
22806716--22806894	47	3.8	48	84	3	202	32	12	14	40	1.84
22806902--22807460	49	11.7	48	77	9	459	27	14	18	39	1.90
22806909--22807286	194	1.9	195	86	1	535	28	14	19	37	1.91
22808078--22808115	20	2.0	20	85	10	53	39	0	28	31	1.57
22816152--22816177	2	13.0	2	100	0	52	50	0	0	50	1.00
22830429--22830471	21	2.0	21	81	0	50	30	9	34	25	1.87
22837995--22838208	97	2.2	99	83	7	267	29	14	13	42	1.83
22838092--22838486	126	3.1	126	80	6	451	32	13	12	41	1.81
22838439--22838488	26	1.9	26	91	0	82	32	14	12	42	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22845789--22845815	14	1.9	14	100	0	54	29	0	11	59	1.32
22861509--22861599	43	2.1	42	89	2	146	20	36	19	23	1.95
22864718--22864742	13	1.9	13	100	0	50	48	8	0	44	1.32
22869860--22869939	33	2.4	33	74	0	88	35	16	11	37	1.84
22869993--22870057	30	2.2	30	88	0	94	46	4	13	35	1.64
22870441--22870525	42	2.0	41	95	4	161	63	4	4	25	1.34
22873521--22873565	21	2.1	23	88	12	69	28	0	8	62	1.25
22882834--22882871	19	2.0	19	100	0	76	42	31	0	26	1.56
22888862--22888902	21	2.0	21	85	0	55	34	17	14	34	1.90
22892776--22892971	35	5.8	34	73	7	166	25	13	27	34	1.93
22892816--22892988	32	5.2	32	74	13	161	24	12	27	35	1.92
22892773--22892988	67	3.2	67	91	0	351	23	12	27	36	1.91
22901097--22901129	17	1.9	17	93	0	57	33	21	36	9	1.85
22902005--22902180	67	2.6	67	90	3	266	25	11	26	36	1.90
22902005--22902153	35	4.5	32	74	16	124	23	12	27	36	1.90
22907213--22907268	20	3.0	20	76	10	64	57	8	0	33	1.30
22907214--22907265	19	2.7	20	76	8	54	59	9	0	30	1.29
22914299--22914401	38	2.6	39	85	8	131	23	40	15	20	1.90
22920369--22920410	19	2.2	19	86	0	57	21	38	7	33	1.81
22929965--22929990	13	2.0	13	100	0	52	46	7	0	46	1.31
22931686--22931749	29	2.3	29	83	5	78	35	12	17	34	1.87
22931845--22931952	45	2.4	45	90	3	164	31	22	13	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22931883--22932071	66	2.9	65	86	3	261	31	21	15	31	1.95
22932001--22932041	21	2.0	21	95	0	73	36	26	14	21	1.93
22935258--22935303	20	2.3	20	96	0	83	28	4	21	45	1.71
22953862--22953921	30	2.1	29	81	6	68	31	8	21	38	1.83
22959106--22959188	23	3.6	23	95	0	139	25	1	40	32	1.63
22967826--22967873	20	2.5	19	80	6	60	83	0	12	4	0.79
22971477--22971519	19	2.3	19	95	0	77	48	16	16	18	1.81
22973350--22973400	17	3.0	17	85	0	66	35	21	31	11	1.90
22976689--22976915	114	2.0	113	99	0	436	38	21	6	33	1.78
23001109--23001152	22	2.0	22	86	0	61	40	20	6	31	1.79
23042205--23042245	15	2.8	15	88	3	57	24	2	17	56	1.53
23045629--23045678	22	2.3	22	100	0	100	44	12	10	34	1.75
23046047--23046092	19	2.4	20	82	10	60	54	0	2	43	1.12
23047906--23047930	13	1.9	13	100	0	50	44	0	8	48	1.32
23052689--23052748	30	2.1	29	81	6	68	31	8	21	38	1.83
23055791--23055822	2	16.0	2	100	0	64	50	0	0	50	1.00
23056000--23056036	11	3.4	11	92	7	58	62	5	8	24	1.44
23056000--23056041	11	3.7	12	90	9	54	59	7	7	26	1.50
23056293--23056338	19	2.4	20	82	10	60	54	0	2	43	1.12
23056738--23056775	20	1.9	20	100	0	76	28	5	21	44	1.73
23059284--23059329	20	2.4	19	82	7	58	43	2	8	45	1.47
23061795--23061884	45	2.0	45	100	0	180	44	15	11	28	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23067473--23067497	13	1.9	13	100	0	50	48	8	0	44	1.32
23073830--23074247	213	2.0	213	89	3	646	28	24	10	36	1.88
23080965--23081011	21	2.2	21	100	0	94	40	19	19	21	1.92
23084341--23084388	22	2.2	23	77	7	55	47	2	10	39	1.49
23084726--23084774	2	26.0	2	82	12	59	48	2	2	46	1.25
23084726--23084773	13	4.0	13	76	15	50	50	2	2	45	1.25
23095999--23096031	13	2.4	14	95	5	59	72	12	0	15	1.12
23095997--23096059	14	4.8	12	83	12	54	74	6	1	17	1.10
23097730--23097772	22	2.0	22	85	0	59	72	0	4	23	1.04
23097882--23097962	27	2.9	27	78	9	74	71	0	3	24	1.02
23097898--23097984	32	2.7	31	81	15	90	71	0	4	24	1.05
23097917--23097974	10	6.1	10	71	18	52	75	0	1	22	0.89
23097917--23097982	21	3.2	21	75	12	57	74	0	3	22	0.96
23098390--23098441	23	2.2	23	82	3	59	23	25	5	46	1.74
23106495--23106549	18	2.8	20	81	10	69	65	0	18	16	1.27
23106495--23106558	19	3.3	19	72	20	51	68	0	17	14	1.21
23108260--23108563	38	8.1	37	81	5	283	23	15	20	40	1.90
23108274--23108563	75	3.9	75	79	4	298	22	16	21	40	1.91
23108787--23108825	13	2.9	14	92	7	64	74	10	0	15	1.07
23110499--23110542	18	2.4	18	85	14	56	77	0	4	18	0.94
23110498--23110541	23	2.0	22	86	4	61	77	0	4	18	0.94
23110649--23110706	27	2.2	26	87	6	82	72	0	3	24	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23110673--23110715	15	2.8	15	85	3	50	76	0	2	20	0.89
23110668--23110734	20	3.5	20	78	11	61	74	0	1	23	0.90
23110652--23110734	27	3.0	27	73	18	73	72	0	2	25	0.97
23110667--23110734	14	5.0	15	72	21	53	75	0	1	23	0.89
23110667--23110752	32	2.7	31	76	16	79	72	2	3	22	1.12
23119674--23119716	18	2.4	18	100	0	86	18	30	9	41	1.82
23140876--23140945	30	2.4	30	83	7	81	54	7	5	32	1.51
23140897--23140955	30	2.0	30	89	0	91	54	5	6	33	1.49
23141569--23141677	55	2.0	55	81	3	130	13	11	34	40	1.80
23141781--23141841	23	2.7	23	81	0	77	24	18	31	26	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91