genome.fa.s3.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  46  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16017752--16017893	31	4.6	31	97	0	266	23	36	3	35	1.73
16018335--16018373	19	2.1	19	90	0	60	64	0	0	35	0.94
16027966--16027990	13	1.9	13	100	0	50	64	12	16	8	1.49
16046267--16046322	23	2.4	23	84	0	76	26	39	5	28	1.78
16046317--16046448	43	3.1	42	83	2	138	21	38	18	21	1.93
16049387--16049492	43	2.5	43	93	3	178	25	34	17	21	1.96
16051080--16051112	2	16.5	2	100	0	66	0	0	48	51	1.00
16053304--16053356	27	2.0	27	84	0	70	35	16	7	39	1.78
16053301--16053508	54	3.8	54	68	8	141	34	14	5	45	1.68
16053391--16053513	27	4.6	27	84	2	149	38	14	5	41	1.70
16055930--16055984	26	2.2	24	78	12	56	30	10	0	58	1.33
16059568--16059634	30	2.3	29	82	5	73	28	7	22	41	1.80
16061550--16061590	22	1.9	21	85	5	55	51	4	19	24	1.66
16068025--16068083	21	2.8	21	94	0	100	37	10	11	40	1.76
16071853--16072145	80	3.7	80	83	3	342	30	11	23	34	1.90
16084899--16085073	42	4.2	42	83	1	181	21	34	20	23	1.96
16094228--16094378	41	3.8	41	81	10	161	23	15	37	24	1.93
16094384--16094488	54	1.9	55	90	7	171	21	14	40	22	1.90
16098560--16098759	105	1.9	103	85	4	276	25	40	13	21	1.89
16098807--16098834	2	14.0	2	100	0	56	50	0	0	50	1.00
16099578--16099617	20	2.0	20	90	0	62	40	10	35	15	1.80
16109296--16109334	20	2.1	18	85	9	51	7	12	10	69	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16113536--16113726	73	2.6	73	78	8	194	19	19	17	42	1.89
16120207--16120236	16	1.9	15	93	6	51	13	3	6	76	1.11
16120418--16120496	27	3.2	25	71	22	69	35	12	12	39	1.81
16121479--16121784	80	3.8	80	86	2	402	31	10	24	33	1.89
16123309--16123341	17	1.9	17	88	11	50	45	0	24	30	1.53
16132108--16132239	43	3.1	43	92	4	216	23	35	16	24	1.95
16141796--16141901	38	2.7	39	82	5	126	23	41	15	19	1.89
16144657--16144772	34	3.5	32	79	4	88	31	15	21	31	1.94
16144786--16144825	20	2.0	20	100	0	80	20	10	20	50	1.76
16145899--16145972	35	2.1	35	89	0	112	33	25	10	29	1.90
16146619--16146718	49	2.0	49	94	0	173	25	16	19	40	1.91
16155484--16155529	20	2.3	20	96	0	83	28	4	21	45	1.71
16158331--16158461	43	3.1	42	81	5	129	22	34	19	23	1.96
16158348--16158463	43	2.7	43	85	2	135	22	34	20	22	1.97
16165306--16165352	12	3.9	12	79	17	53	76	4	0	19	0.95
16165309--16165361	17	3.2	16	80	15	63	83	1	0	15	0.74
16165312--16165357	23	1.9	24	91	8	76	80	2	0	17	0.81
16165312--16165360	25	1.9	25	87	4	71	81	2	0	16	0.78
16165866--16165908	13	3.3	13	87	6	61	16	4	2	76	1.05
16167868--16167949	41	2.0	41	100	0	164	31	19	19	29	1.96
16171549--16171589	20	2.0	20	95	0	73	43	14	0	41	1.45
16173845--16173996	73	2.1	73	100	0	304	22	34	9	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16181024--16181054	2	15.5	2	100	0	62	48	0	0	51	1.00
16181054--16181098	2	22.5	2	100	0	90	0	0	48	51	1.00
16181106--16181140	17	2.1	17	100	0	70	28	25	11	34	1.91
16184578--16184618	20	2.0	20	95	0	73	43	14	0	41	1.45
16189115--16189139	10	2.5	10	100	0	50	48	8	32	12	1.69
16195244--16195290	19	2.5	19	82	6	51	59	0	2	38	1.09
16204901--16204933	17	2.1	16	88	11	50	15	21	6	57	1.59
16216562--16216593	15	2.1	15	94	0	55	40	3	6	50	1.43
16227211--16227238	11	2.5	11	100	0	56	53	14	0	32	1.41
16227252--16227311	22	2.7	22	92	0	102	45	21	6	26	1.77
16231692--16231743	18	2.8	18	71	18	52	0	34	0	65	0.93
16231708--16231752	22	2.0	24	86	8	67	0	37	0	62	0.96
16231705--16231772	15	4.5	15	77	20	63	0	35	1	63	1.04
16232836--16232872	18	2.0	19	89	5	58	37	8	0	54	1.30
16243367--16243429	5	12.2	5	86	6	90	74	0	25	0	0.82
16243447--16243503	25	2.3	25	82	14	73	43	14	28	14	1.83
16267930--16267985	22	2.5	23	75	16	64	0	33	0	66	0.92
16267925--16267995	15	4.8	15	80	3	72	1	33	0	64	1.02
16273316--16273358	21	2.0	23	86	9	63	18	25	6	48	1.73
16275754--16275805	24	2.2	24	92	0	86	34	9	26	28	1.88
16283614--16283654	21	1.9	22	90	5	66	17	24	7	51	1.70
16283680--16283706	11	2.5	11	100	0	54	0	25	7	66	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16284369--16284458	42	2.1	42	95	4	164	24	34	17	23	1.96
16303023--16303052	14	2.1	15	93	6	53	26	3	13	56	1.52
16304678--16304789	39	2.9	39	78	2	118	31	14	21	33	1.93
16308711--16308870	42	3.8	42	92	0	257	22	33	21	22	1.97
16315388--16315509	42	2.9	42	92	0	199	23	34	21	20	1.97
16316193--16316234	19	2.2	19	83	8	50	47	9	30	11	1.72
16321926--16322094	88	1.9	87	100	0	329	28	28	9	32	1.88
16323191--16323283	43	2.2	43	88	3	134	22	31	18	27	1.97
16326176--16326214	20	1.9	21	89	5	62	20	41	0	38	1.53
16329135--16329176	20	2.1	20	86	0	57	45	2	30	21	1.65
16331855--16331939	35	2.5	35	90	1	136	34	5	28	31	1.81
16331917--16331965	22	2.2	23	85	7	75	36	8	20	34	1.82
16331881--16332045	57	2.8	60	84	8	230	34	7	27	29	1.85
16331973--16332022	26	1.9	26	92	8	84	42	8	22	28	1.81
16338567--16338600	2	17.0	2	100	0	68	50	0	0	50	1.00
16340664--16340789	42	3.0	42	84	0	180	22	32	23	22	1.98
16347574--16347612	21	1.9	20	84	5	51	17	23	25	33	1.96
16347855--16347934	42	1.9	42	89	0	124	22	31	22	23	1.99
16350311--16350362	20	2.6	20	75	0	59	21	40	7	30	1.81
16351516--16351588	35	2.1	35	92	0	119	24	8	34	32	1.85
16353544--16353752	54	3.9	54	90	0	337	22	37	17	22	1.94
16355414--16355524	35	3.3	32	75	14	109	31	24	14	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16355370--16355544	66	2.6	67	87	5	248	35	25	13	25	1.92
16355397--16355506	31	3.4	31	72	15	105	34	26	13	25	1.93
16358636--16358664	13	2.1	14	93	6	51	27	13	6	51	1.66
16378367--16378428	28	2.2	28	79	0	70	33	17	17	30	1.94
16386865--16386970	38	2.7	39	82	5	126	24	40	14	20	1.90
16397412--16397621	54	3.9	54	92	0	330	25	39	14	20	1.91
16422027--16422083	28	2.0	28	90	6	89	26	22	21	29	1.99
16422138--16422175	20	1.9	20	100	0	76	44	21	5	28	1.73
16423157--16423251	35	2.7	35	83	0	109	11	25	22	41	1.87
16429938--16430030	47	2.0	47	91	0	150	35	12	20	31	1.90
16430169--16430249	22	3.8	22	90	4	123	33	13	44	8	1.74
16430328--16430391	25	2.5	25	79	2	74	51	10	18	18	1.75
16433907--16433957	2	25.0	2	92	4	84	50	0	1	47	1.12
16434020--16434145	36	3.5	36	93	0	198	29	42	11	17	1.84
16434755--16434788	11	3.0	11	91	4	50	38	29	5	26	1.80
16444228--16444335	38	2.8	38	92	0	180	25	16	36	22	1.94
16444406--16444432	8	3.4	8	100	0	54	37	0	11	51	1.37
16446481--16446575	36	2.6	36	81	0	127	25	43	16	14	1.86
16446475--16446588	36	3.2	35	77	7	122	26	40	15	17	1.90
16450831--16450937	38	2.7	40	85	4	146	24	39	14	21	1.91
16460768--16460923	63	2.5	63	90	0	231	21	19	35	24	1.96
16465730--16465778	22	2.2	22	85	0	62	28	18	20	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16467615--16467681	29	2.3	29	75	14	75	32	11	22	32	1.90
16468942--16468980	21	1.9	22	85	15	57	41	0	23	35	1.55
16469327--16469499	49	3.5	49	81	0	184	25	13	27	34	1.93
16472835--16472945	38	2.9	38	90	2	168	25	36	16	21	1.94
16474542--16474614	38	2.0	36	94	5	128	54	5	32	5	1.46
16474606--16474666	5	12.8	5	88	8	83	81	0	18	0	0.68
16474603--16474666	28	2.4	26	89	7	101	81	0	18	0	0.70
16482475--16482515	21	1.9	22	90	5	66	17	24	7	51	1.70
16484321--16484516	35	5.6	35	86	1	241	26	38	12	23	1.90
16494259--16494361	52	2.0	52	96	0	188	31	12	23	33	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91