genome.fa.s3.2.7.7.80.10.50.1000.71.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  71  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25583729--25583810	27	3.1	27	76	8	73	41	1	1	56	1.15
25583755--25583854	42	2.4	42	85	6	132	43	3	2	52	1.28
25583827--25584102	48	5.7	51	68	24	152	43	1	2	52	1.23
25583418--25584013	300	2.0	296	85	8	796	41	2	2	53	1.27
25584018--25584069	26	2.0	26	88	0	77	44	1	1	51	1.23
25583731--25584108	142	2.7	143	85	8	545	42	2	2	53	1.24
25595817--25595860	14	3.4	14	70	23	51	13	18	0	68	1.22
25595808--25595860	24	2.2	24	100	0	106	11	20	0	67	1.21
25597276--25597661	213	1.8	213	79	9	457	51	9	10	28	1.69
25608521--25608546	12	2.2	12	100	0	52	38	34	7	19	1.80
25612437--25612468	2	16.0	2	100	0	64	50	0	50	0	1.00
25612453--25612548	49	2.0	48	97	2	183	27	16	37	17	1.91
25621038--25621086	20	2.5	19	77	9	53	73	6	4	16	1.19
25621527--25621579	1	53.0	1	100	0	106	100	0	0	0	0.00
25628161--25628205	22	2.0	24	91	8	76	48	0	0	51	1.00
25628160--25628206	15	3.1	16	75	9	53	46	0	0	53	1.00
25631112--25631149	20	1.9	20	84	10	51	26	15	0	57	1.38
25631426--25631527	36	2.9	35	79	5	98	43	13	15	27	1.85
25631763--25631896	29	4.6	29	77	3	135	14	23	11	50	1.75
25652352--25652394	17	2.7	16	82	7	52	48	0	11	39	1.40
25653301--25653361	15	3.7	15	70	29	52	39	4	3	52	1.39
25653879--25653905	8	3.4	8	100	0	54	48	11	0	40	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25654969--25655006	8	4.8	8	83	9	51	57	0	2	39	1.12
25657468--25657563	45	2.1	45	81	7	115	40	14	12	32	1.83
25657513--25657653	76	1.9	76	80	3	167	42	12	12	32	1.80
25657589--25657685	45	2.2	45	83	3	115	36	16	17	29	1.92
25657468--25657728	121	2.2	120	82	2	308	40	13	13	31	1.84
25657676--25657824	30	5.3	29	71	13	100	36	12	15	34	1.86
25657775--25657837	29	2.2	29	88	0	90	41	11	12	34	1.79
25659676--25659708	13	2.5	13	90	0	57	54	12	9	24	1.66
25664720--25664841	62	2.0	62	82	8	149	39	6	3	50	1.45
25665177--25665231	23	2.4	22	84	6	65	41	0	1	56	1.10
25673536--25673562	3	9.0	3	100	0	54	66	0	0	33	0.92
25696307--25696359	27	2.0	27	84	0	70	47	18	1	32	1.60
25709952--25709989	18	2.1	18	100	0	76	36	21	5	36	1.76
25727581--25727635	25	2.2	24	80	3	65	41	0	0	58	0.98
25727668--25727702	17	2.1	17	89	10	54	51	0	0	48	1.00
25737419--25737470	26	2.0	27	88	3	79	59	0	3	36	1.16
25738334--25738390	29	2.1	26	87	9	78	33	0	1	64	1.04
25738339--25738432	31	3.2	29	82	8	111	42	0	1	56	1.06
25738488--25738582	33	2.9	33	74	10	88	48	2	7	42	1.43
25742438--25742627	94	2.0	94	97	0	362	27	18	16	36	1.93
25759746--25759818	18	4.1	18	68	10	51	39	10	6	42	1.67
25759796--25759838	20	2.2	20	86	0	59	39	2	2	55	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25759939--25759965	7	3.9	7	100	0	54	44	14	0	40	1.46
25765997--25766024	13	2.2	13	100	0	56	64	14	14	7	1.48
25773748--25774020	134	2.0	134	88	4	399	35	17	14	32	1.90
25774234--25774281	20	2.4	21	79	6	55	37	2	2	58	1.22
25774449--25774498	24	2.1	24	85	7	66	54	0	0	44	1.00
25774479--25774543	19	3.2	19	83	16	78	38	1	0	60	1.07
25774484--25774543	12	4.2	14	73	16	52	38	1	0	60	1.07
25774556--25774610	17	3.5	17	74	23	66	23	5	0	70	1.07
25774555--25774610	29	1.9	29	96	0	103	23	7	0	69	1.12
25785790--25785818	2	14.5	2	100	0	58	51	0	0	48	1.00
25791880--25792043	47	3.5	47	94	0	283	35	3	12	47	1.59
25797719--25797788	15	4.8	15	71	13	65	38	4	2	54	1.35
25797718--25797837	21	5.7	21	66	16	77	40	2	4	52	1.34
25797715--25797833	42	2.8	42	85	2	150	40	2	4	52	1.34
25803810--25803844	7	4.9	7	96	3	61	60	0	0	40	0.97
25812213--25812302	45	2.0	45	100	0	180	33	37	8	20	1.83
25816989--25817018	2	15.0	2	100	0	60	50	0	0	50	1.00
25820935--25820974	18	2.2	19	86	8	57	0	15	7	77	0.98
25824451--25824515	30	2.2	30	82	0	76	29	3	12	55	1.52
25824819--25824844	13	2.0	13	100	0	52	30	7	7	53	1.57
25825238--25825391	76	2.0	77	98	1	301	42	19	6	31	1.77
25829517--25829590	37	2.0	37	94	0	130	41	4	4	50	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25829868--25829997	26	5.1	26	75	6	113	39	10	16	33	1.83
25834697--25834791	50	1.9	50	89	4	147	28	16	13	41	1.87
25835877--25835914	2	19.0	2	100	0	76	50	0	0	50	1.00
25843202--25843237	18	2.0	18	94	0	63	41	0	0	58	0.98
25847734--25847761	2	14.0	2	100	0	56	50	0	50	0	1.00
25879161--25879190	3	10.0	3	100	0	60	66	0	0	33	0.92
25886804--25886849	23	2.0	23	91	0	74	39	10	10	39	1.76
25891150--25891182	16	2.1	16	88	5	50	30	12	0	57	1.35
25896418--25896471	26	2.1	25	82	3	63	16	3	1	77	1.00
25896734--25896784	23	2.1	25	85	7	70	62	5	3	27	1.36
25897057--25897112	28	2.0	28	96	0	103	51	3	14	30	1.59
25905395--25905484	30	3.0	30	80	4	110	37	3	2	56	1.28
25905401--25905491	29	3.1	28	81	6	101	38	2	4	54	1.32
25905803--25905840	19	2.1	18	95	5	67	47	0	0	52	1.00
25913786--25913822	18	2.1	18	94	0	65	43	8	5	43	1.57
25921017--25921050	15	2.1	17	89	10	54	58	0	0	41	0.98
25925707--25925734	2	14.0	2	100	0	56	50	0	0	50	1.00
25928836--25928860	4	6.2	4	100	0	50	76	0	24	0	0.80
25933963--25934086	61	2.0	62	93	1	214	33	21	9	34	1.86
25941975--25942056	31	2.7	31	90	1	139	51	13	12	23	1.74
25942167--25942255	45	2.0	45	93	2	151	50	21	7	20	1.73
25943056--25943081	2	13.0	2	100	0	52	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25948312--25948368	19	2.9	19	73	17	55	1	19	0	78	0.83
25948315--25948368	22	2.5	22	84	6	65	1	20	0	77	0.86
25948512--25948545	15	2.2	15	89	5	50	0	14	5	79	0.91
25962290--25962330	18	2.3	18	91	4	66	46	24	19	9	1.80
25963282--25963462	27	6.8	27	81	1	177	33	19	19	27	1.96
25963298--25963385	26	3.4	25	87	4	104	32	25	17	25	1.96
25963284--25963494	79	2.6	81	77	9	207	32	19	19	28	1.97
25963598--25963713	27	4.3	27	70	4	90	38	18	18	24	1.93
25963519--25963701	54	3.4	53	77	8	165	33	20	18	28	1.96
25968130--25968184	2	27.5	2	100	0	110	0	49	0	50	1.00
25968171--25968258	44	2.0	43	93	2	149	22	23	10	42	1.84
25971491--25971544	28	1.9	28	85	7	74	22	14	9	53	1.69
25972529--25972579	24	2.1	24	85	10	68	68	0	3	27	1.07
25972513--25972692	33	5.5	33	75	12	115	65	0	4	30	1.13
25990964--25990990	4	6.8	4	100	0	54	77	0	22	0	0.76
25991928--25991979	2	26.0	2	100	0	104	50	0	0	50	1.00
25992772--25992846	30	2.6	28	76	14	73	37	5	2	54	1.37
25998841--25998865	13	1.9	13	100	0	50	64	0	0	36	0.94
25998838--25998886	18	2.9	16	80	11	62	67	0	0	32	0.91
25999267--25999442	91	1.9	90	81	3	210	27	6	15	50	1.69
25999712--25999765	28	1.9	28	88	0	81	38	9	18	33	1.83
26003770--26003796	12	2.2	12	100	0	54	85	0	14	0	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26003768--26003800	16	2.1	15	94	5	57	84	0	15	0	0.61
26009392--26009434	21	2.0	21	100	0	86	25	18	23	32	1.97
26015358--26015387	6	5.0	6	100	0	60	66	16	0	16	1.25
26015811--26015835	4	6.2	4	100	0	50	0	24	48	28	1.52
26022585--26022687	34	3.0	34	98	0	197	58	11	8	21	1.60
26025327--26025365	2	20.0	2	94	5	71	48	0	0	51	1.00
26074887--26074960	33	2.2	32	88	4	103	40	1	4	54	1.28
26075365--26075445	36	2.1	36	84	11	99	40	0	2	56	1.12
26078321--26078368	24	2.1	23	84	7	62	45	25	10	18	1.81
26078326--26078384	24	2.5	24	88	0	82	42	22	13	22	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91