genome.fa.s3.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  30  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10367795--10367924	43	3.0	43	86	4	156	26	16	31	24	1.97
10372851--10373162	156	2.0	155	96	0	570	24	32	11	32	1.90
10382132--10382174	21	2.0	21	86	0	59	18	30	4	46	1.69
10382957--10383086	43	3.0	43	87	2	172	23	17	36	23	1.95
10383440--10383470	15	2.1	15	100	0	62	41	12	12	32	1.81
10387653--10387685	17	2.0	16	94	5	57	54	24	15	6	1.63
10388068--10388156	38	2.3	38	96	0	160	28	38	8	24	1.86
10388024--10388156	38	3.5	38	81	4	144	25	36	12	25	1.92
10389769--10389821	26	2.0	26	96	0	97	28	15	15	41	1.87
10390325--10390377	27	2.0	26	85	10	72	43	20	0	35	1.52
10390429--10390638	43	4.9	43	82	3	253	21	33	18	25	1.96
10390429--10390651	86	2.6	86	86	1	295	21	33	18	26	1.97
10393362--10393495	43	3.1	43	86	5	166	25	33	17	23	1.96
10394299--10394361	23	2.7	23	90	0	90	39	7	34	17	1.79
10398894--10399052	54	2.9	54	83	1	212	27	38	11	22	1.89
10403838--10403878	21	1.9	22	90	5	66	51	7	24	17	1.70
10403838--10403882	20	2.2	21	84	11	58	55	6	22	15	1.63
10403836--10403883	21	2.3	20	79	10	60	56	6	22	14	1.61
10411202--10411228	13	2.1	13	100	0	54	25	22	14	37	1.93
10416980--10417099	35	3.5	35	76	15	135	34	25	10	29	1.90
10416987--10417121	66	2.0	67	88	4	202	37	24	11	25	1.90
10424329--10424704	42	9.0	42	97	0	707	21	23	33	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10424939--10425000	26	2.4	26	94	0	106	24	3	40	32	1.71
10432229--10432347	43	2.8	43	88	2	168	22	21	37	18	1.94
10432239--10432360	43	2.8	43	87	2	165	23	18	39	18	1.92
10432346--10432408	20	3.2	20	86	2	92	26	3	39	30	1.72
10436696--10436843	60	2.5	60	78	2	154	24	16	22	35	1.95
10441527--10441559	17	2.0	16	94	5	57	6	15	24	54	1.63
10445136--10445219	35	2.4	35	82	4	98	27	34	11	26	1.91
10446620--10446712	43	2.2	43	92	0	150	24	17	35	22	1.95
10454834--10454922	37	2.5	36	80	12	94	32	8	33	24	1.87
10455155--10455199	22	2.0	22	91	0	72	35	17	20	26	1.95
10457105--10457129	2	12.5	2	100	0	50	52	0	0	48	1.00
10458854--10458972	37	3.2	37	89	2	177	23	36	9	30	1.86
10463713--10463902	36	5.3	35	82	1	191	44	16	5	34	1.70
10463714--10463902	71	2.7	71	82	2	236	44	16	5	33	1.70
10464656--10464690	2	17.5	2	100	0	70	51	0	0	48	1.00
10464703--10464765	20	3.2	20	90	2	101	30	41	3	25	1.71
10464764--10464882	43	2.8	43	89	2	168	19	37	21	21	1.94
10469804--10469971	23	7.2	23	87	4	246	31	8	27	32	1.86
10469804--10469975	47	3.7	47	91	0	281	30	9	27	32	1.88
10469945--10470018	34	2.1	34	87	9	105	29	14	22	32	1.94
10470107--10470150	22	2.0	22	86	0	61	36	9	43	11	1.72
10470204--10470297	28	3.5	28	86	7	140	56	12	17	13	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10470753--10470781	2	15.0	2	92	7	51	48	0	0	51	1.00
10472055--10472096	18	2.3	19	80	12	52	26	23	23	26	2.00
10476535--10476702	23	7.2	23	85	4	237	31	8	26	33	1.86
10476535--10476706	47	3.7	47	88	3	265	30	9	26	33	1.88
10476676--10476749	34	2.1	34	87	9	105	29	14	22	32	1.94
10476839--10476882	22	2.0	22	90	0	70	34	9	45	11	1.72
10476942--10477061	28	4.5	27	83	9	149	51	12	19	16	1.75
10476952--10477058	25	4.1	25	86	3	115	49	14	20	15	1.79
10477021--10477086	31	2.1	33	82	5	82	51	10	19	18	1.75
10479829--10479859	2	15.5	2	93	0	53	48	0	3	48	1.17
10483391--10483487	37	2.7	36	77	6	97	31	14	19	34	1.92
10484079--10484128	21	2.5	21	83	6	59	18	4	26	52	1.63
10489197--10489239	19	2.2	20	84	12	54	41	11	6	39	1.68
10496987--10497027	21	1.9	21	85	5	55	60	7	24	7	1.48
10512306--10512392	44	2.0	44	100	0	174	56	6	11	25	1.59
10512392--10512431	19	2.1	19	90	0	62	47	0	35	17	1.48
10513220--10513264	22	2.1	21	87	4	63	24	17	6	51	1.70
10520253--10520296	18	2.4	18	85	7	54	61	2	0	36	1.09
10522661--10522686	2	13.0	2	100	0	52	50	0	0	50	1.00
10522654--10522794	76	1.9	73	92	5	230	47	5	9	36	1.59
10525254--10525447	72	2.7	72	84	5	241	23	20	21	35	1.96
10526388--10526432	20	2.2	21	88	4	65	53	6	24	15	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10526386--10526433	21	2.3	22	82	10	64	54	6	25	14	1.63
10528787--10528823	17	2.2	17	90	0	56	10	35	24	29	1.89
10531124--10531158	11	3.3	11	88	8	54	0	22	11	65	1.24
10547030--10547227	72	2.7	73	84	3	240	23	17	22	36	1.94
10557849--10557960	56	2.0	55	94	3	197	23	22	8	44	1.80
10575186--10575237	23	2.3	23	93	0	86	32	9	15	42	1.79
10581781--10581806	11	2.4	11	100	0	52	23	0	0	76	0.78
10583189--10583394	73	2.8	72	82	4	200	39	17	19	22	1.92
10586884--10586926	22	1.9	23	85	4	61	48	0	4	46	1.22
10593139--10593292	42	3.6	42	88	2	202	20	32	20	27	1.97
10594507--10594608	44	2.3	43	93	3	168	9	37	5	47	1.61
10599654--10599698	23	2.0	23	90	0	72	62	4	4	28	1.34
10605805--10605838	10	3.4	10	100	0	68	29	0	11	58	1.33
10608022--10608064	2	22.0	2	86	13	63	46	0	2	51	1.13
10608160--10608201	2	22.0	2	90	9	70	47	0	0	52	1.00
10608021--10608295	137	2.0	137	98	1	534	34	7	18	38	1.79
10608250--10608421	42	4.1	42	83	0	191	23	18	34	23	1.96
10614986--10615025	20	2.0	20	95	0	71	15	32	10	42	1.79
10632149--10632608	229	2.0	229	89	2	699	27	15	12	45	1.81
10634248--10634304	6	9.0	6	83	7	51	73	1	22	1	1.02
10634261--10634304	13	3.5	13	84	12	56	72	0	27	0	0.85
10634253--10634304	26	2.0	27	88	11	81	73	1	25	0	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10635718--10635784	30	2.2	29	82	7	80	32	11	5	49	1.64
10635846--10635909	33	1.9	33	93	0	110	37	3	15	43	1.63
10635847--10635920	33	2.2	33	87	0	103	37	4	14	43	1.65
10641785--10641937	43	3.5	44	79	6	186	21	18	37	21	1.94
10641995--10642029	2	17.0	2	94	5	61	48	2	0	48	1.16
10642198--10642228	2	15.5	2	93	0	53	48	3	0	48	1.17
10658653--10658703	26	2.0	26	92	0	84	21	19	21	37	1.95
10659970--10660021	26	2.0	26	96	0	95	30	28	11	28	1.92
10664106--10664140	5	7.0	5	90	0	52	37	22	2	37	1.69
10667580--10667613	17	1.9	18	94	5	61	26	2	5	64	1.30
10668337--10668366	15	1.9	16	93	6	53	23	3	6	66	1.30
10667195--10668894	752	2.3	753	92	0	2823	35	13	12	38	1.82
10675624--10675664	17	2.3	18	87	4	57	21	0	2	75	0.92
10676040--10676432	62	6.4	62	82	6	431	28	16	17	37	1.92
10676040--10676432	124	3.2	123	84	5	481	28	16	17	37	1.92
10676287--10676389	31	3.3	31	66	20	79	33	14	16	35	1.89
10685405--10685440	17	2.1	17	100	0	72	16	0	27	55	1.42
10688222--10688257	18	2.0	18	88	0	54	13	30	8	47	1.73
10688739--10688776	20	1.9	20	94	0	67	23	2	5	68	1.23
10688830--10688862	9	3.7	9	84	15	50	27	6	21	45	1.75
10688829--10688870	18	2.4	17	88	11	66	26	7	19	47	1.74
10694430--10694584	52	3.0	52	93	1	249	23	14	30	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10694560--10694674	35	3.2	36	84	8	128	22	16	33	27	1.96
10737414--10737495	35	2.4	34	81	8	94	30	14	21	32	1.94
10737414--10737505	35	2.6	33	78	11	87	28	16	21	33	1.95
10748319--10748399	35	2.3	36	82	4	87	22	12	32	33	1.91
10750134--10750220	39	2.2	40	82	13	101	35	22	18	22	1.95
10763337--10763372	2	18.0	2	100	0	72	0	0	50	50	1.00
10782232--10782261	2	15.0	2	92	0	51	53	0	46	0	1.00
10782797--10782933	48	3.1	43	76	13	118	27	18	30	23	1.97
10796454--10796495	19	2.2	19	83	8	50	59	0	16	23	1.37
10797498--10797591	43	2.2	41	82	10	118	26	14	32	25	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91