genome.fa.s3.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  39  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13461181--13461239	26	2.3	26	79	5	66	1	28	3	66	1.18
13468828--13468886	26	2.3	26	79	5	66	1	28	3	66	1.18
13469972--13470074	38	2.6	40	84	6	131	20	15	40	23	1.90
13471653--13471733	29	2.8	29	79	9	92	20	24	23	30	1.99
13474956--13474984	2	14.5	2	100	0	58	48	0	0	51	1.00
13475032--13475142	42	2.6	41	83	5	134	24	31	18	25	1.98
13478785--13478839	21	2.6	21	91	0	92	30	12	14	41	1.83
13480209--13480280	35	2.1	35	84	5	92	29	33	11	26	1.91
13480240--13480348	44	2.6	42	80	7	116	26	36	11	24	1.90
13482183--13482225	20	2.2	20	86	0	59	16	30	11	41	1.83
13482446--13482583	70	2.0	68	92	1	222	27	36	8	26	1.86
13483686--13483761	38	2.0	38	84	0	98	28	34	9	27	1.88
13485341--13485471	43	3.1	43	81	6	133	25	17	35	20	1.95
13487277--13487317	22	1.9	21	90	5	64	51	9	26	12	1.70
13489245--13489327	42	2.0	42	95	4	150	22	32	24	20	1.98
13490644--13490668	10	2.5	10	100	0	50	24	8	48	20	1.76
13513713--13514015	27	11.2	28	79	5	266	32	13	16	37	1.88
13513710--13514015	136	2.3	135	84	4	393	32	13	16	36	1.88
13513713--13514037	55	6.1	54	80	7	297	32	13	16	36	1.89
13518310--13518371	2	31.0	2	90	0	97	48	3	1	46	1.28
13525043--13525088	15	3.3	14	77	19	51	0	30	2	67	1.03
13525047--13525096	20	2.5	20	90	3	73	0	32	2	66	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13533038--13533072	18	1.9	18	88	11	54	34	11	5	48	1.63
13538346--13538375	2	15.0	2	100	0	60	50	0	0	50	1.00
13538427--13538529	38	2.6	40	84	3	129	21	17	40	20	1.91
13539140--13539184	22	2.0	22	95	0	81	28	6	37	26	1.82
13542811--13542927	56	2.1	56	95	0	207	26	30	8	34	1.86
13546565--13546622	23	2.6	23	91	2	100	41	6	6	44	1.58
13547664--13547718	20	2.6	21	88	5	76	0	32	0	67	0.91
13547807--13547843	19	1.9	19	94	0	65	35	10	35	18	1.86
13549471--13549538	4	17.0	4	93	0	100	50	5	0	44	1.26
13551858--13551902	20	2.2	20	84	0	63	64	8	22	4	1.40
13565097--13565151	27	1.9	30	89	10	89	9	32	7	50	1.61
13565304--13565557	35	7.3	35	81	4	255	43	12	6	36	1.70
13565290--13565557	141	1.9	137	84	4	358	42	12	6	37	1.69
13572866--13572948	41	2.0	42	90	2	132	21	24	34	19	1.96
13578368--13578426	26	2.3	26	79	5	66	66	3	28	1	1.18
13587920--13587999	36	2.2	36	82	6	90	37	10	3	48	1.55
13588031--13588158	21	5.6	21	70	17	85	39	17	9	34	1.82
13588031--13588157	49	2.6	50	87	6	183	39	17	9	33	1.82
13593035--13593069	18	1.9	18	100	0	70	22	11	25	40	1.88
13600126--13600153	3	9.3	3	100	0	56	0	32	0	67	0.91
13601021--13601155	71	1.9	71	86	3	191	42	6	25	25	1.79
13606029--13606160	43	3.1	43	84	6	160	26	20	33	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13606541--13606614	38	1.9	38	86	0	103	25	14	21	37	1.92
13608388--13608456	33	2.1	33	86	0	93	28	11	17	42	1.84
13613879--13614041	80	2.0	80	94	2	283	31	11	24	33	1.90
13625649--13625749	32	3.2	32	92	4	161	32	13	13	39	1.85
13632837--13632862	3	8.7	3	100	0	52	34	30	0	34	1.58
13646736--13646787	28	1.9	27	84	7	70	30	21	17	30	1.96
13646831--13646876	20	2.3	20	81	7	58	47	15	4	32	1.65
13649056--13649156	30	3.5	29	77	12	100	32	6	8	51	1.60
13649228--13649290	33	1.9	33	96	0	117	31	9	22	36	1.86
13650216--13650273	30	2.0	29	89	3	89	36	5	5	53	1.46
13658596--13658774	90	2.0	90	91	4	290	45	5	5	43	1.49
13661193--13661239	21	2.3	21	82	10	53	29	12	17	40	1.86
13680356--13680486	57	2.3	57	86	2	174	49	5	3	41	1.41
13682596--13682753	63	2.5	63	89	0	235	25	32	15	26	1.96
13691393--13691420	3	9.3	3	100	0	56	32	0	0	67	0.91
13691601--13691850	125	2.0	125	88	3	371	40	12	15	31	1.85
13704425--13704468	20	2.2	20	84	8	54	31	9	25	34	1.87
13705166--13705208	21	2.1	21	86	4	61	32	6	32	27	1.84
13704467--13705849	357	3.9	355	85	7	1725	26	13	18	41	1.88
13705505--13705567	20	3.1	20	88	4	99	31	7	33	26	1.85
13710603--13710660	14	3.9	15	78	14	57	74	3	1	20	1.06
13710625--13710674	25	2.1	26	85	14	72	76	0	4	20	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13710617--13710659	17	2.5	17	82	17	54	76	0	2	20	0.89
13711097--13711296	94	2.1	93	89	1	301	30	14	41	13	1.84
13711374--13711456	33	2.6	32	90	5	141	38	16	31	13	1.87
13711991--13712036	20	2.3	20	84	0	56	71	0	2	26	0.97
13712546--13712572	14	1.9	14	100	0	54	77	0	0	22	0.76
13712538--13712578	18	2.4	17	80	19	57	78	0	4	17	0.93
13712863--13712900	17	2.3	16	90	4	58	76	0	0	23	0.79
13712863--13712900	8	4.6	8	87	6	58	76	0	0	23	0.79
13713008--13713079	27	2.6	27	76	8	65	68	0	6	25	1.15
13715035--13715099	4	16.2	4	80	0	58	50	38	3	7	1.47
13715035--13715099	6	10.8	6	79	0	58	50	38	3	7	1.47
13715213--13715321	42	2.6	42	95	0	191	43	18	5	33	1.73
13717317--13717350	12	3.1	11	91	8	52	91	0	0	8	0.43
13725513--13725781	133	2.0	132	84	5	346	27	22	18	30	1.97
13726557--13726602	1	46.0	1	100	0	92	0	0	0	100	0.00
13743426--13743465	20	2.0	20	100	0	80	20	20	15	45	1.86
13757055--13757159	40	2.7	38	83	4	131	20	15	40	23	1.90
13760933--13760968	13	2.9	12	92	8	63	55	0	19	25	1.43
13762580--13762780	66	3.0	65	81	5	231	26	13	26	33	1.94
13769000--13769030	11	2.8	11	95	0	53	29	0	25	45	1.54
13769070--13769104	5	7.0	5	90	0	52	40	0	22	37	1.55
13778229--13778480	66	3.8	66	87	2	319	25	13	26	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13778315--13778422	34	3.2	34	70	15	116	32	10	25	31	1.89
13780183--13780228	23	2.0	24	82	4	58	6	28	4	60	1.40
13781453--13781622	84	2.0	84	87	0	241	25	20	31	22	1.98
13781423--13781618	42	4.7	43	79	5	195	25	19	32	22	1.97
13781659--13781696	2	19.0	2	88	0	58	50	2	2	44	1.30
13783045--13783569	262	2.0	262	98	0	1016	25	23	15	34	1.95
13785595--13785627	2	16.5	2	100	0	66	51	0	0	48	1.00
13785843--13785935	34	2.7	33	91	6	150	19	12	30	37	1.89
13786027--13786113	34	2.5	35	81	12	117	37	16	21	24	1.93
13786248--13786306	5	11.8	5	89	7	93	79	1	18	0	0.81
13786341--13786397	25	2.3	24	82	14	71	49	7	19	24	1.73
13788407--13788470	22	2.9	22	90	2	92	28	4	25	42	1.75
13788521--13788560	5	8.0	5	85	0	53	42	0	20	37	1.52
13792640--13792666	2	13.5	2	100	0	54	51	0	0	48	1.00
13794576--13794611	15	2.4	15	95	0	63	25	5	5	63	1.38
13796628--13796657	11	2.7	11	94	0	51	3	0	13	83	0.77
13799295--13799568	47	5.8	47	78	5	277	27	17	32	22	1.97
13799295--13799568	94	2.9	94	85	3	372	27	17	32	22	1.97
13799295--13799567	141	1.9	141	81	4	327	27	17	31	23	1.97
13799556--13799633	23	3.3	23	66	15	61	26	16	26	29	1.97
13799557--13799709	47	3.4	47	77	11	158	29	15	25	29	1.96
13800180--13800343	31	5.3	31	86	2	195	25	22	18	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13802528--13802795	31	8.6	31	83	0	329	23	18	19	38	1.93
13804374--13804410	17	2.1	18	90	5	58	37	8	0	54	1.30
13804329--13804513	52	3.8	47	74	11	149	36	8	3	51	1.49
13804346--13804379	14	2.4	14	95	0	59	44	5	2	47	1.42
13804356--13804513	52	3.1	50	77	9	153	36	8	3	51	1.49
13804456--13804491	16	2.2	16	95	0	63	33	2	0	63	1.08
13805510--13805771	31	8.5	31	86	0	326	25	18	19	36	1.94
13810034--13810276	31	7.8	31	80	5	267	40	19	14	25	1.90
13811878--13811913	18	2.0	18	88	0	54	16	11	0	72	1.12
13812123--13812174	10	5.0	10	77	15	52	86	3	7	1	0.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91