genome.fa.s3.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  10  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2875724--2875817	35	2.7	34	80	8	109	43	27	8	20	1.80
2875779--2875955	92	1.9	92	90	0	282	37	30	9	22	1.86
2876094--2876126	12	2.8	12	82	17	50	0	27	0	72	0.85
2876087--2876166	27	3.1	27	71	14	87	0	27	5	67	1.11
2876088--2876164	23	3.2	23	70	20	66	0	28	5	66	1.13
2876086--2876166	11	6.7	11	72	19	56	0	27	4	67	1.10
2876393--2876426	2	17.0	2	87	0	50	47	2	2	47	1.32
2877820--2877867	24	2.0	24	83	0	60	4	45	16	33	1.67
2878003--2878058	24	2.3	24	81	0	67	30	21	30	17	1.96
2879735--2879786	22	2.4	22	96	0	95	28	21	11	38	1.88
2879911--2879965	23	2.4	23	75	0	56	32	12	21	32	1.91
2879997--2880146	70	2.1	70	92	0	246	32	13	21	33	1.92
2885565--2885998	111	3.8	111	87	4	543	45	25	11	17	1.82
2887396--2887427	15	2.1	15	94	0	55	37	15	12	34	1.85
2889821--2889881	20	3.0	22	77	17	60	31	1	0	67	1.01
2890086--2890569	62	7.9	62	83	5	612	35	19	11	33	1.87
2904009--2904053	22	2.2	20	84	8	54	26	2	0	71	0.98
2906892--2906956	24	2.7	23	74	6	67	36	13	20	29	1.91
2906918--2907006	45	2.0	45	86	0	124	34	15	21	28	1.94
2907040--2907086	24	2.0	24	82	0	58	40	21	19	19	1.92
2906937--2907107	69	2.5	69	80	0	180	33	17	21	27	1.95
2907099--2907264	29	5.8	29	73	16	107	39	15	13	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2907179--2907264	29	2.7	33	77	14	108	40	13	12	32	1.83
2907202--2907277	29	2.7	29	87	4	102	39	15	10	34	1.82
2918742--2918817	40	1.9	40	91	0	125	19	23	22	34	1.97
2921410--2921488	40	2.0	40	89	0	122	18	21	24	35	1.96
2930601--2930632	14	2.3	14	94	0	55	65	21	9	3	1.35
2933644--2933671	2	14.0	2	100	0	56	50	0	0	50	1.00
2933810--2933871	31	2.0	32	83	3	81	38	19	25	16	1.92
2936498--2936595	40	2.4	41	87	3	144	20	23	33	22	1.97
2936615--2936667	26	2.0	26	96	0	97	24	3	41	30	1.72
2936619--2936674	26	2.2	26	90	0	85	26	3	37	32	1.74
2943941--2944316	42	9.0	42	90	0	581	20	20	35	23	1.96
2944294--2944341	25	1.9	25	100	0	96	20	16	37	25	1.93
2944252--2944383	67	2.0	67	95	0	237	21	21	34	22	1.97
2944210--2944425	109	2.0	109	90	0	342	22	21	33	22	1.97
2944168--2944467	151	2.0	151	86	0	420	21	20	34	24	1.97
2944126--2944509	193	2.0	193	86	1	545	21	20	34	24	1.97
2944084--2944524	235	1.9	236	86	2	636	21	20	34	23	1.97
2944319--2944517	42	4.7	42	86	2	265	23	22	32	22	1.98
2944498--2944569	29	2.4	30	93	2	119	20	29	25	25	1.99
2944576--2944637	26	2.4	26	97	0	115	22	3	41	32	1.70
2947566--2947599	15	2.3	15	89	0	50	82	0	17	0	0.67
2950486--2950545	23	2.6	23	86	5	77	28	16	16	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2958211--2958264	28	1.9	28	96	0	99	55	1	3	38	1.28
2960019--2960058	20	2.1	19	95	4	71	77	5	0	17	0.94
2970416--2970452	18	2.1	18	89	0	56	40	10	35	13	1.80
2970853--2970913	30	2.0	30	90	0	95	39	11	26	22	1.88
2972223--2972253	16	1.9	16	93	0	53	45	6	0	48	1.28
2972605--2972648	2	22.0	2	100	0	88	50	0	0	50	1.00
2975734--2975822	46	1.9	46	100	0	178	50	13	8	26	1.71
2983418--2983465	21	2.3	20	79	10	51	50	4	4	41	1.41
2991056--2991112	21	2.6	22	86	5	80	17	8	28	45	1.78
2991062--2991133	22	3.3	22	86	3	92	18	9	26	45	1.80
2991144--2991224	23	3.6	23	83	5	94	37	25	12	24	1.91
2991191--2991270	22	3.6	22	76	3	88	37	23	12	26	1.90
2991264--2991313	21	2.4	20	80	9	64	36	26	18	20	1.95
2991191--2991341	22	6.9	22	74	6	65	40	24	12	22	1.89
2991479--2991515	10	3.6	10	88	3	56	59	18	0	21	1.38
2998018--2998073	15	3.7	15	90	0	67	33	23	7	35	1.82
3004310--3004384	24	3.2	23	75	3	60	5	48	12	34	1.63
3004516--3004571	24	2.3	24	84	0	76	30	19	30	19	1.97
3006228--3006280	26	2.0	26	92	0	88	20	13	9	56	1.64
3006759--3006811	23	2.3	23	90	0	79	22	13	28	35	1.92
3014260--3014742	201	2.4	205	80	5	532	40	27	12	19	1.87
3014775--3014809	15	2.3	15	95	0	61	42	5	17	34	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3015047--3015133	33	2.6	33	80	12	97	28	2	0	68	1.01
3015106--3015220	26	4.1	27	69	18	92	29	6	0	63	1.20
3015420--3015951	211	2.5	212	85	1	685	39	25	12	21	1.89
3015732--3016090	190	1.9	189	90	0	574	39	25	13	21	1.90
3015752--3016131	190	2.0	190	87	0	553	39	26	12	20	1.89
3017305--3017386	22	3.5	22	70	12	74	40	29	12	18	1.87
3017306--3017412	48	2.2	48	89	0	160	40	27	10	22	1.86
3019167--3019223	30	1.9	29	82	10	71	47	3	12	36	1.58
3031964--3031997	3	11.7	3	87	6	52	67	2	29	0	1.05
3038257--3038286	14	2.1	14	100	0	60	36	20	16	26	1.93
3060329--3060386	16	3.6	16	77	6	64	79	0	20	0	0.74
3060335--3060398	20	3.1	21	81	14	64	76	0	21	1	0.87
3062512--3062544	17	1.9	17	88	11	50	33	6	12	48	1.65
3074160--3074380	55	4.0	55	86	1	291	28	31	14	25	1.95
3084048--3084083	18	2.0	18	94	0	63	33	13	13	38	1.85
3086018--3086094	27	2.9	27	92	0	127	28	20	16	33	1.95
3086108--3086172	27	2.4	27	89	0	94	32	18	15	33	1.92
3090404--3090498	30	3.2	30	71	14	106	34	2	6	55	1.37
3090536--3090576	18	2.2	18	86	8	55	43	2	2	51	1.28
3092883--3092928	23	2.0	23	83	4	58	28	4	17	50	1.65
3094742--3094776	11	3.3	11	88	8	54	20	0	0	80	0.72
3095516--3095611	49	2.0	46	82	7	113	5	33	12	48	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3095792--3095835	10	4.3	10	78	16	54	9	4	11	75	1.19
3096156--3096208	20	2.5	22	84	12	74	22	0	5	71	1.06
3103599--3103636	20	1.9	20	94	0	67	26	5	21	47	1.71
3106152--3106192	15	2.7	16	88	7	59	29	4	19	46	1.71
3106235--3106270	5	7.2	5	87	0	54	41	0	22	36	1.54
3106235--3106279	15	3.0	15	86	0	63	40	0	22	37	1.54
3110241--3110286	20	2.3	20	96	0	83	32	4	19	43	1.71
3122040--3122069	16	1.9	16	93	6	53	16	6	0	76	0.99
3122291--3122334	17	2.5	17	85	10	54	70	0	11	18	1.16
3138039--3138095	2	27.5	2	84	10	53	47	8	0	42	1.34
3141871--3143646	501	3.5	494	84	3	2096	34	11	6	48	1.64
3146002--3146387	199	1.9	198	86	4	546	34	11	7	46	1.69
3146200--3146858	249	2.6	251	87	2	932	33	9	7	49	1.63
3151655--3151734	39	2.1	39	85	4	108	41	11	2	45	1.53
3155268--3155313	20	2.3	20	84	0	65	23	4	23	47	1.69
3162781--3162836	20	2.7	20	86	5	76	50	10	1	37	1.48
3162875--3162913	19	2.0	21	90	10	64	46	5	7	41	1.55
3162936--3163107	24	7.3	23	71	16	88	44	8	3	43	1.50
3162951--3163027	15	5.1	16	75	10	63	49	5	2	42	1.39
3162938--3163116	93	1.9	92	79	15	199	45	8	3	42	1.53
3167191--3167262	24	3.0	24	81	0	90	25	26	26	22	2.00
3168436--3168487	25	2.1	25	88	0	77	36	13	21	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3173090--3173141	24	2.0	24	82	10	59	46	7	0	46	1.31
3172740--3173166	210	2.0	212	90	4	675	34	13	3	48	1.59
3175924--3176125	79	2.5	80	88	1	291	35	23	8	32	1.85
3177167--3177240	20	3.7	20	76	7	69	28	18	14	37	1.91
3182620--3182648	14	2.1	14	100	0	58	34	13	24	27	1.93
3187327--3187412	30	2.9	29	81	8	102	36	12	9	41	1.75
3187317--3187465	60	2.4	64	80	9	148	33	15	11	39	1.83
3187472--3187574	30	3.5	30	77	5	104	32	17	14	35	1.90
3188883--3188933	23	2.2	23	85	0	66	27	9	37	25	1.87
3188893--3188936	23	1.9	23	95	0	79	27	13	34	25	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91