genome.fa.s3.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  20  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6579371--6579431	19	3.2	19	65	9	52	21	42	14	21	1.88
6579549--6579597	2	25.0	2	95	4	91	51	48	0	0	1.00
6582500--6582543	19	2.3	20	88	7	65	18	11	18	52	1.74
6589822--6589865	2	23.0	2	90	9	74	47	0	0	52	1.00
6589801--6589940	69	2.0	70	95	4	257	40	9	7	42	1.64
6589891--6589936	2	23.0	2	90	0	74	45	0	0	54	0.99
6592878--6592935	25	2.4	24	80	13	66	1	13	3	81	0.91
6592893--6592931	17	2.5	16	88	12	55	0	12	0	87	0.55
6592893--6592932	21	1.9	21	89	0	62	0	12	0	87	0.54
6592893--6592932	10	4.0	10	87	6	55	0	12	0	87	0.54
6595155--6595248	44	2.1	44	100	0	188	24	22	8	44	1.80
6598019--6598092	21	3.1	24	69	18	73	51	1	1	45	1.18
6598000--6598092	47	2.0	47	91	0	150	47	3	3	46	1.35
6600030--6600068	21	1.9	21	89	5	62	66	0	2	30	1.05
6602955--6603009	23	2.5	22	80	11	69	50	1	1	45	1.22
6607501--6607587	27	3.2	27	78	3	86	33	22	27	16	1.95
6609039--6609194	52	3.0	52	89	0	240	19	23	17	39	1.92
6610280--6610380	33	3.1	32	84	2	130	33	39	6	19	1.79
6619914--6619950	18	2.1	18	94	0	65	27	18	24	29	1.98
6623837--6623963	43	3.0	42	88	2	182	23	34	18	22	1.96
6625063--6625114	20	2.6	20	71	0	59	28	7	40	23	1.82
6648261--6648311	19	2.7	19	100	0	102	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6651176--6651322	55	2.7	54	83	3	177	19	14	36	28	1.92
6652260--6652289	11	2.7	11	89	0	51	56	0	0	43	0.99
6652687--6652724	19	2.0	19	100	0	76	26	0	31	42	1.56
6654111--6654135	13	1.9	13	100	0	50	44	0	8	48	1.32
6660139--6660163	2	12.5	2	100	0	50	52	0	48	0	1.00
6667707--6667762	29	1.9	29	88	0	85	28	21	5	44	1.74
6671864--6671894	2	16.0	2	93	6	55	51	0	0	48	1.00
6695508--6695900	211	1.9	210	86	1	572	36	19	14	29	1.91
6696546--6696653	36	3.0	36	83	2	110	36	24	11	28	1.89
6697183--6697304	63	1.9	63	81	3	147	24	14	12	48	1.78
6715079--6715139	28	2.1	29	81	3	70	44	18	8	29	1.78
6719646--6719670	3	8.3	3	100	0	50	32	0	0	68	0.90
6729195--6730073	438	2.0	437	94	1	1555	46	16	15	21	1.84
6731394--6731434	2	20.5	2	94	0	73	51	48	0	0	1.00
6731536--6731564	15	1.9	15	100	0	58	68	10	0	20	1.18
6732166--6732199	3	11.3	3	87	0	50	67	2	29	0	1.05
6739133--6739172	21	1.9	21	94	0	71	17	5	17	60	1.54
6739131--6739182	21	2.5	21	80	0	68	13	5	23	57	1.57
6740223--6740260	2	19.0	2	100	0	76	50	0	0	50	1.00
6740866--6740962	44	2.1	47	83	5	119	39	2	1	57	1.17
6740989--6741061	25	2.7	27	82	14	73	42	1	1	54	1.17
6745212--6745255	18	2.4	18	92	0	70	38	25	22	13	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6745557--6745628	32	2.3	31	88	7	108	31	47	16	4	1.66
6745581--6745626	24	1.9	24	82	8	58	32	45	17	4	1.68
6745638--6745686	18	2.7	18	87	0	71	18	28	6	46	1.72
6756359--6756401	21	2.0	21	81	0	50	30	9	34	25	1.87
6759378--6759439	28	2.1	28	82	5	70	43	17	6	32	1.75
6760236--6760278	22	2.0	22	90	0	68	30	2	4	62	1.28
6762131--6762171	21	1.9	22	85	5	57	48	2	0	48	1.14
6762251--6762292	8	4.9	9	81	18	54	45	0	0	54	0.99
6762250--6762304	18	2.9	18	75	17	51	45	0	1	52	1.11
6762361--6762391	2	15.5	2	100	0	62	51	0	0	48	1.00
6762591--6762639	24	2.0	24	88	7	73	38	8	4	48	1.52
6763845--6763886	19	2.3	19	87	4	59	28	0	23	47	1.52
6764235--6764277	21	2.0	22	86	13	63	58	6	20	13	1.59
6765089--6765123	16	2.2	16	89	0	52	40	2	8	48	1.49
6766525--6766563	15	2.6	16	88	8	55	28	2	17	51	1.59
6769146--6769183	19	2.0	19	94	0	67	26	0	28	44	1.54
6780514--6780543	14	2.1	14	100	0	60	50	0	20	30	1.49
6783710--6783788	38	2.1	37	92	2	131	31	2	2	63	1.21
6784579--6784620	22	1.9	22	85	0	57	33	4	4	57	1.41
6789970--6789998	2	14.5	2	100	0	58	48	0	51	0	1.00
6795361--6795427	21	3.3	21	70	8	66	22	38	20	17	1.93
6795364--6795431	20	3.2	23	64	23	58	22	38	22	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6795350--6795488	40	3.5	40	90	1	201	22	42	15	19	1.89
6795346--6795484	19	7.1	19	64	12	75	21	41	16	20	1.91
6795598--6795644	2	24.0	2	95	4	87	51	48	0	0	1.00
6795644--6795688	2	22.5	2	100	0	90	51	0	0	48	1.00
6804974--6805016	22	2.0	22	85	0	59	6	4	6	81	0.98
6807788--6807835	20	2.3	21	89	3	71	4	4	16	75	1.12
6809808--6809922	54	2.1	54	91	3	187	40	6	12	40	1.67
6820204--6820366	77	2.1	77	83	7	199	44	5	10	39	1.62
6822174--6822216	21	2.0	21	95	0	77	32	13	23	30	1.93
6822418--6822579	81	2.0	81	100	0	324	49	8	14	27	1.73
6827401--6827436	2	18.0	2	100	0	72	50	0	0	50	1.00
6827485--6827518	2	17.0	2	100	0	68	50	0	0	50	1.00
6827916--6827989	28	2.7	28	82	2	87	37	12	13	36	1.82
6828311--6828368	29	2.0	29	83	6	73	39	8	0	51	1.33
6835614--6835671	29	2.0	29	86	3	82	31	3	0	65	1.09
6835744--6836784	387	2.7	388	97	0	1971	42	7	6	43	1.58
6836615--6836684	26	2.6	26	77	4	68	58	5	4	31	1.41
6838187--6838265	30	2.6	30	80	9	97	41	6	1	50	1.36
6839954--6840057	52	2.0	52	100	0	208	46	19	15	19	1.85
6844130--6844193	32	2.0	31	87	3	92	17	15	25	42	1.88
6846608--6846794	67	2.8	66	75	7	191	20	12	27	39	1.89
6846606--6846770	23	7.4	22	75	7	109	20	12	27	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6846932--6846988	22	2.5	22	80	2	69	21	12	28	38	1.89
6848481--6848559	22	3.6	22	79	3	88	22	7	26	43	1.80
6854716--6855070	59	5.9	59	84	2	422	35	17	12	34	1.88
6854698--6855070	180	2.1	178	85	1	494	35	19	12	33	1.89
6854717--6855077	121	3.0	118	86	1	479	35	17	12	34	1.87
6855984--6856017	18	2.0	16	88	11	50	20	0	2	76	0.92
6859020--6859061	20	2.1	20	95	0	75	28	4	23	42	1.74
6869302--6869350	22	2.2	22	92	0	80	30	6	24	38	1.80
6869309--6869373	22	3.0	22	90	0	94	30	4	24	40	1.75
6869408--6869800	189	2.1	189	85	2	513	22	12	25	39	1.89
6869760--6869801	22	1.9	22	85	0	57	16	14	21	47	1.82
6869773--6869822	22	2.3	22	89	0	73	18	16	20	46	1.85
6869620--6870004	211	1.8	211	88	2	585	25	11	22	40	1.88
6875883--6875926	22	2.0	22	86	0	61	31	18	25	25	1.97
6877864--6877908	23	2.0	23	86	0	63	42	26	4	26	1.74
6877869--6878167	23	13.2	23	83	3	257	34	25	9	30	1.88
6877869--6878156	69	4.2	69	82	4	298	34	26	9	30	1.87
6878462--6878518	26	2.1	27	93	3	98	50	3	12	33	1.57
6878468--6878529	26	2.4	26	88	0	79	56	4	12	25	1.56
6879995--6880198	40	5.0	40	82	7	223	58	19	1	20	1.49
6879995--6880178	81	2.2	84	81	7	225	57	19	2	21	1.51
6883032--6883057	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6884725--6884758	16	2.1	16	88	0	50	2	17	0	79	0.86
6886309--6886623	86	3.8	86	76	12	330	38	7	40	13	1.73
6886265--6886688	164	2.6	165	83	3	489	37	8	41	13	1.75
6886545--6886691	78	1.9	78	84	2	197	34	8	44	12	1.73
6887955--6888005	17	2.9	17	80	8	50	47	1	5	45	1.38
6889381--6889414	12	2.8	12	86	0	50	14	29	14	41	1.86
6890284--6890905	307	2.0	309	93	0	1059	31	22	17	27	1.97
6901516--6901566	25	2.0	24	85	7	66	62	1	35	0	1.06
6910123--6910152	7	4.1	7	91	8	51	70	3	0	26	1.03
6910123--6910153	15	2.1	15	93	0	53	70	3	0	25	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91