genome.fa.s3.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  5  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1431358--1431406	23	2.1	24	85	11	66	44	8	2	44	1.45
1431357--1431409	24	2.2	25	80	16	67	45	7	1	45	1.42
1440036--1440087	21	2.5	21	90	0	77	32	9	9	48	1.69
1442602--1442700	52	1.9	52	85	0	135	33	18	8	40	1.80
1444237--1444814	296	2.0	296	84	2	757	41	10	10	36	1.75
1444532--1445120	264	2.2	265	85	3	776	40	11	11	36	1.78
1447451--1448620	265	4.4	265	89	1	1745	40	12	11	35	1.79
1447451--1448620	529	2.2	532	90	1	1819	40	12	11	35	1.79
1448450--1448785	165	2.0	165	89	2	514	40	12	12	34	1.81
1448615--1449766	267	4.3	265	89	2	1580	40	12	11	34	1.80
1447921--1449317	697	2.0	694	89	1	2161	40	12	11	34	1.80
1448615--1449771	532	2.2	530	87	2	1617	40	12	11	35	1.80
1452008--1452061	28	2.0	27	82	13	67	29	18	16	35	1.93
1452535--1453439	263	3.4	263	94	0	1519	40	11	11	35	1.78
1455598--1457404	266	6.7	267	84	5	2088	40	12	11	35	1.79
1455598--1457404	534	3.4	531	84	5	2158	40	12	11	35	1.79
1462661--1462721	30	2.0	30	90	0	95	32	22	11	32	1.90
1463660--1463698	2	21.5	2	80	19	50	51	0	0	48	1.00
1463661--1463698	7	5.6	7	82	17	53	52	0	0	47	1.00
1463660--1463698	9	4.3	9	81	12	53	51	0	0	48	1.00
1464565--1464593	11	2.5	12	94	5	51	44	20	3	31	1.68
1466450--1466711	133	2.0	133	85	0	353	35	12	10	41	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1466593--1467443	272	3.1	271	84	3	1034	33	12	10	43	1.76
1467728--1468336	272	2.2	271	82	0	716	34	11	10	44	1.73
1470970--1470994	13	1.9	13	100	0	50	48	0	0	52	1.00
1475618--1476792	268	4.4	264	84	6	1411	34	11	9	44	1.73
1481332--1481372	2	20.5	2	100	0	82	0	51	0	48	1.00
1482538--1482567	2	15.0	2	100	0	60	50	0	0	50	1.00
1490436--1490514	30	2.6	30	87	2	122	59	1	21	17	1.44
1490837--1490919	29	2.9	29	80	7	105	50	7	24	18	1.71
1520664--1520697	13	2.6	13	85	0	50	0	8	5	85	0.75
1522294--1522334	21	1.9	22	90	5	66	12	7	21	58	1.58
1528537--1528611	33	2.3	33	85	0	96	36	20	10	33	1.87
1528667--1528727	30	2.0	31	87	9	90	55	4	6	32	1.47
1529232--1529270	18	2.1	19	86	13	55	56	0	2	41	1.13
1529741--1529766	13	2.0	13	100	0	52	61	7	0	30	1.24
1531656--1531695	7	5.7	7	100	0	80	30	15	30	25	1.95
1532992--1533016	12	2.1	12	100	0	50	44	0	16	40	1.47
1533833--1533880	21	2.3	22	82	10	64	54	0	2	43	1.12
1546189--1546215	14	1.9	14	100	0	54	40	7	14	37	1.74
1552485--1552515	10	3.1	10	100	0	62	77	0	12	9	0.99
1555407--1555440	14	2.3	15	95	5	61	64	0	0	35	0.94
1557300--1557364	2	32.5	2	100	0	130	50	0	0	49	1.00
1557965--1558002	13	2.6	15	80	20	53	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1557970--1557997	13	2.2	13	100	0	56	42	0	0	57	0.99
1557967--1558028	30	2.0	31	84	12	83	40	0	0	59	0.97
1558834--1558881	13	3.8	12	79	17	53	8	8	4	79	1.06
1561770--1561814	21	2.1	21	87	0	63	24	26	4	44	1.72
1564703--1564783	29	2.8	29	83	10	103	29	7	7	55	1.55
1564703--1564785	30	2.9	28	84	10	105	28	7	7	56	1.53
1564701--1564805	30	3.5	30	78	6	99	33	7	6	52	1.56
1573840--1573972	58	2.3	58	94	3	234	21	6	22	50	1.70
1587376--1587414	20	2.0	20	85	10	53	48	0	0	51	1.00
1587403--1587466	24	2.5	26	85	5	78	35	1	1	60	1.15
1592503--1592752	27	9.3	27	72	5	191	27	37	16	18	1.92
1592486--1592752	54	4.9	54	89	0	365	26	37	16	19	1.93
1602539--1602873	183	1.8	183	85	2	476	35	10	14	39	1.80
1603275--1603318	22	2.0	23	82	13	56	65	6	2	25	1.28
1611497--1611529	16	2.1	17	88	11	52	51	0	0	48	1.00
1611998--1612136	40	3.5	40	85	1	188	23	0	16	58	1.42
1621434--1621468	12	2.9	12	91	0	52	42	2	31	22	1.68
1625399--1625436	13	3.0	13	92	3	60	65	5	0	28	1.14
1625422--1625468	15	3.0	16	78	12	53	63	10	0	25	1.26
1625422--1625468	16	3.0	15	81	12	51	63	10	0	25	1.26
1626225--1626456	117	2.0	117	85	6	317	61	1	7	30	1.31
1639564--1639618	25	2.2	25	83	3	65	56	3	7	32	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1640710--1640734	11	2.3	11	100	0	50	40	0	0	60	0.97
1644602--1644628	3	9.0	3	100	0	54	66	0	0	33	0.92
1647149--1647190	8	5.2	8	80	8	50	26	0	2	71	0.98
1649401--1649594	39	5.0	39	82	1	210	25	36	13	24	1.92
1653853--1653907	16	3.4	16	75	9	58	18	10	21	49	1.78
1656508--1656565	27	2.1	29	83	6	75	72	3	12	12	1.24
1656510--1656565	28	2.0	29	86	10	80	71	3	12	12	1.27
1658426--1658467	6	7.3	6	81	10	52	38	0	61	0	0.96
1661334--1661405	29	2.5	28	73	8	65	43	2	0	54	1.15
1663740--1663779	20	2.0	20	100	0	80	45	15	25	15	1.84
1678635--1678677	14	3.0	15	83	10	54	46	0	0	53	1.00
1678797--1678884	29	3.0	28	79	11	88	54	0	0	45	0.99
1678839--1678881	19	2.3	19	84	8	52	48	0	0	51	1.00
1678833--1678877	21	2.1	22	87	4	65	48	0	0	51	1.00
1679266--1679329	16	3.9	17	74	13	62	46	0	0	53	1.00
1679245--1679333	34	2.5	37	77	19	98	51	0	0	48	1.00
1679252--1679319	34	2.0	34	88	8	104	51	0	0	48	1.00
1680348--1680381	2	17.0	2	100	0	68	50	0	0	50	1.00
1680409--1680463	26	2.1	26	82	0	65	30	9	3	56	1.48
1685946--1685979	15	2.4	14	90	5	50	38	0	0	61	0.96
1688149--1688194	18	2.6	18	83	13	60	43	0	0	56	0.99
1692465--1692505	2	21.0	2	95	5	75	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1695172--1695223	17	3.1	16	78	13	59	40	11	3	44	1.59
1696087--1696243	28	5.6	28	73	6	86	42	13	5	38	1.66
1696115--1696263	55	2.7	54	76	7	156	43	12	4	38	1.64
1696162--1696259	28	3.5	28	71	2	81	42	13	4	39	1.63
1703756--1704025	135	2.0	135	100	0	540	25	18	14	41	1.89
1704363--1704415	2	27.0	2	80	3	63	47	1	3	47	1.31
1705675--1705863	63	3.0	63	83	6	249	37	13	22	26	1.91
1714348--1714508	79	2.0	79	98	0	313	19	18	21	41	1.90
1719415--1719450	15	2.4	15	100	0	72	13	19	33	33	1.91
1727595--1727797	102	2.0	103	96	0	372	36	14	10	37	1.82
1728012--1728040	2	14.5	2	100	0	58	51	0	0	48	1.00
1731458--1731513	2	28.0	2	96	0	103	50	1	0	48	1.11
1733420--1733460	22	1.9	22	90	5	66	41	4	4	48	1.46
1754675--1754861	93	2.0	93	97	0	356	43	12	16	27	1.83
1756179--1756306	45	2.8	45	84	0	139	35	17	18	28	1.94
1756279--1756326	24	2.0	24	87	0	69	43	14	16	25	1.86
1756301--1756397	45	2.2	45	80	0	113	34	15	16	34	1.90
1756178--1756397	114	1.9	114	82	3	273	35	16	17	30	1.92
1756382--1756441	30	2.0	30	83	0	75	38	13	13	35	1.84
1756462--1756558	29	3.3	29	85	7	108	40	15	8	36	1.77
1757260--1757315	29	1.9	29	85	7	78	37	0	0	62	0.95
1758658--1758695	2	19.0	2	94	0	58	55	0	44	0	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1758660--1758702	20	2.2	20	95	0	77	58	0	41	0	0.98
1768783--1768818	2	18.0	2	100	0	72	0	0	50	50	1.00
1768856--1768894	2	19.5	2	100	0	78	0	0	48	51	1.00
1776052--1776118	30	2.2	31	82	12	86	52	13	0	34	1.41
1776070--1776128	32	2.0	32	83	12	81	54	11	0	33	1.37
1787561--1787605	17	2.6	19	76	20	53	6	37	6	48	1.56
1788636--1788727	42	2.2	42	80	7	98	47	4	6	41	1.49
1794028--1794231	112	1.8	113	93	1	356	43	6	5	43	1.55
1794167--1794213	21	2.3	20	78	7	51	53	6	4	36	1.46
1794881--1794929	25	1.9	25	83	4	62	22	12	22	42	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91