genome.fa.s3.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  44  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15201294--15201334	19	2.2	20	82	13	59	51	0	2	46	1.14
15236321--15236362	12	3.3	12	83	9	57	76	0	0	23	0.79
15236319--15236369	21	2.5	20	82	14	61	78	0	0	21	0.75
15246294--15246332	2	19.0	2	84	5	51	48	2	2	46	1.29
15248282--15248328	22	2.1	23	84	4	60	53	14	4	27	1.60
15249122--15249713	292	2.0	292	94	1	1044	40	13	16	29	1.87
15258227--15258333	37	2.9	37	91	0	187	22	39	10	28	1.87
15270966--15271025	30	2.1	29	81	6	68	31	8	21	38	1.83
15275556--15275619	19	3.4	19	65	8	58	21	35	20	21	1.96
15275506--15275642	38	3.6	38	90	4	188	23	40	16	19	1.90
15280559--15280616	27	2.1	28	87	3	82	8	29	15	46	1.75
15280617--15280666	5	10.6	5	93	6	63	0	20	0	80	0.72
15280608--15280667	4	14.5	4	86	10	61	0	21	0	78	0.75
15282567--15282644	37	2.1	37	88	4	113	25	37	10	26	1.88
15286027--15286106	33	2.4	34	83	12	94	31	13	25	30	1.94
15286262--15286310	13	3.6	14	79	17	50	69	0	30	0	0.89
15286266--15286312	10	4.2	12	89	10	50	72	0	27	0	0.85
15286276--15286318	5	8.2	5	92	7	68	76	0	23	0	0.78
15286319--15286354	2	18.0	2	88	0	54	47	5	0	47	1.25
15292682--15292769	33	2.6	34	80	8	83	32	11	22	32	1.90
15292930--15292998	5	13.2	5	81	13	77	76	0	23	0	0.78
15296386--15296539	55	2.8	55	88	0	227	27	32	15	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15297374--15297419	20	2.4	19	85	3	56	71	6	15	6	1.27
15300499--15300585	43	2.0	43	93	0	147	22	34	19	22	1.97
15306274--15306439	86	1.9	86	86	2	235	25	17	34	21	1.95
15306274--15306439	43	3.9	43	84	6	203	25	17	34	21	1.95
15330378--15330406	2	14.5	2	100	0	58	0	48	0	51	1.00
15331086--15331127	22	2.0	22	86	13	61	35	30	4	28	1.78
15333093--15333153	27	2.3	27	85	0	95	49	0	32	18	1.48
15333101--15333173	23	3.0	23	82	8	74	49	1	30	19	1.57
15337836--15337876	2	20.5	2	100	0	82	0	0	48	51	1.00
15340589--15340628	20	2.0	21	90	5	64	70	7	2	20	1.24
15347164--15347212	20	2.5	21	80	12	59	28	2	12	57	1.46
15347178--15347230	21	2.7	20	82	5	63	28	0	9	62	1.26
15356341--15356397	21	2.8	21	94	2	98	26	3	28	42	1.72
15356445--15356579	42	3.2	42	81	5	164	28	17	32	21	1.96
15363576--15363709	42	3.2	42	79	1	160	29	16	30	23	1.96
15365339--15365394	27	2.1	27	100	0	112	26	7	17	48	1.73
15366147--15366242	35	2.9	33	75	13	97	23	11	28	36	1.90
15368571--15368732	60	2.7	60	85	5	213	36	24	17	22	1.95
15368728--15368788	21	2.8	23	90	5	76	22	16	27	32	1.96
15368736--15368788	21	2.5	21	96	0	97	26	15	30	28	1.96
15369141--15369272	43	3.1	43	84	2	158	21	37	18	22	1.95
15370048--15370091	20	2.2	21	84	15	58	40	18	20	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15386511--15386554	20	2.2	20	87	0	61	65	6	2	25	1.28
15387584--15387624	20	2.0	20	85	0	55	60	12	9	17	1.57
15400504--15400578	8	9.3	7	78	21	60	17	1	1	80	0.86
15400499--15400578	15	4.8	16	78	17	83	17	1	1	80	0.86
15400500--15400581	42	1.9	43	92	7	141	18	1	1	79	0.87
15400496--15400581	34	2.5	34	81	9	111	17	1	1	80	0.84
15404552--15404641	35	2.6	35	80	0	117	25	36	14	23	1.93
15408302--15408395	38	2.5	36	80	13	100	21	36	19	23	1.95
15411366--15411480	36	3.2	35	81	10	110	29	33	13	23	1.93
15411457--15411556	52	1.9	52	91	0	164	35	33	10	22	1.87
15415293--15415352	30	2.1	29	81	6	68	31	8	21	38	1.83
15429303--15429436	40	3.5	37	73	13	121	23	17	36	22	1.95
15433067--15433159	35	2.6	36	79	3	89	21	8	23	46	1.79
15433097--15433204	35	3.1	35	82	0	126	17	9	25	48	1.77
15434853--15434877	13	1.9	13	100	0	50	44	0	8	48	1.32
15438054--15438091	20	2.0	20	89	5	60	42	15	0	42	1.47
15442722--15442750	10	2.7	11	89	10	51	0	37	0	62	0.96
15448025--15448065	21	1.9	22	90	5	66	51	7	24	17	1.70
15448025--15448069	20	2.2	21	84	11	58	55	6	22	15	1.63
15448023--15448070	21	2.3	20	79	10	60	56	6	22	14	1.61
15450742--15450790	2	24.5	2	87	0	71	42	2	4	51	1.32
15455464--15455513	24	2.1	24	84	0	64	8	30	18	44	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15457465--15457516	26	2.0	26	96	0	95	21	13	7	57	1.61
15457458--15457523	26	2.8	23	79	18	73	22	13	6	57	1.58
15457860--15458185	23	14.2	23	67	4	111	28	9	28	32	1.89
15457915--15458104	92	2.1	92	89	4	285	27	8	28	35	1.86
15457939--15458206	46	5.8	46	68	9	136	27	9	29	34	1.88
15461639--15461731	27	3.4	27	89	1	132	9	22	15	52	1.71
15461734--15461778	5	9.4	5	95	4	76	0	20	0	80	0.72
15469122--15469185	22	2.9	22	83	0	74	46	23	10	18	1.80
15469144--15469433	161	1.8	160	84	6	401	40	24	15	20	1.91
15474705--15474844	29	5.0	28	84	7	176	40	10	14	35	1.81
15474705--15474853	55	2.6	55	83	7	183	40	10	13	35	1.78
15478052--15478138	35	2.5	35	86	1	129	9	22	22	44	1.81
15479200--15479404	43	4.8	43	86	1	250	22	35	19	22	1.96
15505771--15505813	5	8.8	5	89	5	61	81	4	0	13	0.84
15514431--15514471	21	2.0	21	90	9	66	41	19	17	21	1.90
15514434--15514593	71	2.2	72	80	9	168	38	18	20	22	1.93
15521190--15521395	105	2.0	105	89	0	313	38	20	14	25	1.91
15535806--15535846	19	2.1	20	90	4	66	39	12	14	34	1.84
15549651--15549713	19	3.7	19	67	30	61	53	0	3	42	1.16
15549653--15549722	30	2.3	30	100	0	140	54	0	2	42	1.15
15551888--15551929	20	2.2	19	84	16	52	30	2	26	40	1.69
15551924--15552097	43	3.9	45	75	13	189	28	15	31	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15556732--15556850	35	3.4	35	88	0	130	28	32	10	28	1.89
15557746--15557788	20	2.2	20	82	0	50	39	9	39	11	1.74
15559207--15559434	61	3.7	61	91	0	366	26	32	17	23	1.97
15565166--15565220	28	1.9	29	85	10	78	27	20	18	34	1.95
15575099--15575137	17	2.3	16	83	12	51	82	0	10	7	0.86
15575099--15575142	9	4.9	9	86	8	54	81	0	11	6	0.86
15575535--15575587	27	2.0	27	85	7	72	28	24	3	43	1.71
15576865--15577025	55	2.9	55	84	0	223	21	14	36	27	1.93
15576872--15576959	28	3.2	28	63	26	69	20	13	38	27	1.90
15585505--15585553	21	2.4	19	80	12	53	26	8	6	59	1.50
15585515--15585558	20	2.1	21	88	12	65	22	11	4	61	1.48
15586243--15586298	20	2.8	20	81	5	60	32	10	25	32	1.90
15586337--15586379	21	2.0	21	86	0	59	25	23	16	34	1.95
15588339--15588375	18	2.1	18	89	0	56	27	0	18	54	1.44
15588529--15588558	2	15.0	2	100	0	60	50	0	0	50	1.00
15588632--15588662	2	15.5	2	100	0	62	48	0	0	51	1.00
15588529--15588729	104	1.9	103	100	0	393	39	6	12	39	1.71
15591351--15591401	20	2.7	18	77	14	57	62	0	0	37	0.95
15591355--15591414	32	1.9	32	83	16	81	61	0	0	38	0.96
15601356--15601401	20	2.3	20	88	7	67	32	4	17	45	1.68
15601446--15601498	28	1.9	27	88	3	79	30	18	22	28	1.98
15601446--15601504	28	2.1	28	84	6	75	30	20	23	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15605657--15605682	13	2.0	13	100	0	52	61	15	7	15	1.55
15611431--15611474	22	2.0	22	95	0	79	27	9	25	38	1.86
15625980--15626046	17	3.9	17	79	16	68	23	0	0	76	0.79
15625960--15626041	26	3.1	26	81	12	87	21	2	1	74	1.01
15625980--15626046	32	2.0	34	88	5	102	23	0	0	76	0.79
15627614--15627652	21	1.9	19	90	10	60	0	30	0	69	0.89
15628247--15628284	10	4.0	10	80	13	53	2	10	0	86	0.66
15628247--15628281	18	1.9	18	100	0	70	2	11	0	85	0.69
15629861--15629953	36	2.6	37	82	5	127	24	11	35	27	1.91
15630110--15630151	22	1.9	22	90	0	66	33	9	19	38	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91