genome.fa.s3.2.7.7.80.10.50.1000.90.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  90  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35254411--35254449	20	2.0	19	85	5	51	66	0	0	33	0.92
35255365--35255411	22	2.2	21	88	3	67	2	17	2	78	0.94
35275753--35275780	2	14.0	2	100	0	56	50	0	50	0	1.00
35275833--35275861	2	14.5	2	100	0	58	48	0	51	0	1.00
35284027--35284057	14	2.2	14	94	0	53	38	9	48	3	1.52
35284028--35284062	18	1.9	18	88	0	52	40	8	48	2	1.49
35296278--35296304	2	13.5	2	100	0	54	51	0	48	0	1.00
35311719--35312371	292	2.2	292	85	4	850	42	14	22	20	1.88
35314101--35314141	2	21.5	2	90	9	68	51	0	0	48	1.00
35324252--35324287	2	18.0	2	100	0	72	50	0	0	50	1.00
35326330--35326364	10	3.4	10	92	7	61	40	22	11	25	1.88
35328663--35328706	23	2.0	23	86	4	63	50	2	0	47	1.13
35328646--35328708	22	3.0	21	77	9	65	52	3	0	44	1.17
35328741--35328792	24	2.2	24	80	6	63	57	0	0	42	0.98
35328748--35328804	28	2.0	29	82	6	71	61	0	0	38	0.96
35329992--35330059	21	3.4	20	75	16	61	64	2	0	32	1.08
35330037--35330080	14	3.1	14	81	18	56	65	9	0	25	1.21
35330036--35330083	15	3.3	15	78	18	57	64	8	0	27	1.22
35332184--35332219	2	18.0	2	100	0	72	50	0	0	50	1.00
35332792--35332883	38	2.4	38	92	1	150	50	1	47	1	1.15
35348540--35348590	2	26.0	2	96	4	95	49	0	0	50	1.00
35348672--35348720	2	25.0	2	95	4	91	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35352655--35352702	2	24.0	2	100	0	96	50	0	0	50	1.00
35359219--35359276	21	2.8	21	97	0	107	10	32	10	46	1.72
35360516--35360555	16	2.5	16	87	0	53	30	0	0	70	0.88
35360510--35360550	21	2.0	21	90	0	64	29	0	0	70	0.87
35362716--35362743	2	14.0	2	100	0	56	50	0	0	50	1.00
35365764--35365810	24	2.0	24	95	0	85	14	12	17	55	1.70
35395702--35395737	17	2.1	18	94	5	65	63	5	30	0	1.17
35397291--35397327	15	2.6	15	87	8	51	32	0	0	67	0.91
35401639--35403144	754	2.0	753	94	0	2631	37	11	12	38	1.80
35402972--35403418	224	2.0	223	100	0	885	42	15	11	31	1.82
35403438--35403469	2	16.5	2	93	6	57	50	0	0	50	1.00
35404151--35404181	4	7.8	4	100	0	62	77	0	22	0	0.77
35405675--35405749	35	2.1	37	85	5	100	17	14	10	57	1.65
35437815--35437840	3	8.7	3	100	0	52	0	65	0	34	0.93
35438008--35438053	2	23.0	2	95	0	83	0	47	0	52	1.00
35440086--35440132	2	23.5	2	89	8	69	2	48	0	46	1.14
35440132--35440158	2	13.5	2	100	0	54	48	0	0	51	1.00
35445977--35446016	21	1.9	21	84	0	53	32	15	22	30	1.94
35450349--35450386	18	2.1	18	100	0	76	15	21	23	39	1.92
35450996--35451120	63	2.0	63	96	0	232	32	19	16	32	1.94
35458989--35459016	2	14.0	2	100	0	56	0	50	0	50	1.00
35463759--35463815	26	2.3	25	82	11	73	50	1	0	47	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35463766--35463815	26	1.9	26	91	0	82	56	2	0	42	1.11
35465818--35465863	19	2.2	20	85	11	58	19	15	21	43	1.87
35486309--35486350	22	1.9	22	90	9	68	66	0	2	30	1.04
35491459--35491500	21	2.0	21	86	9	59	40	2	0	57	1.12
35498716--35498899	91	2.0	92	98	1	361	44	7	7	40	1.61
35499613--35499658	23	2.0	23	100	0	92	60	4	17	17	1.51
35501003--35501093	18	4.7	18	69	20	51	72	0	2	24	0.95
35500998--35501083	35	2.4	36	81	9	95	72	0	2	25	0.97
35510442--35510479	3	12.7	3	94	0	67	0	63	0	36	0.95
35514317--35514347	2	15.5	2	100	0	62	48	0	51	0	1.00
35521839--35521867	3	9.7	3	100	0	58	68	0	31	0	0.89
35543838--35543891	2	27.0	2	96	0	99	48	0	1	50	1.11
35547975--35548042	33	2.1	33	88	5	102	50	8	2	38	1.49
35548430--35548456	2	13.5	2	100	0	54	51	0	0	48	1.00
35549712--35549753	16	2.5	17	84	7	50	47	9	11	30	1.72
35556677--35556701	2	12.5	2	100	0	50	0	52	0	48	1.00
35557075--35557102	2	14.0	2	100	0	56	50	0	50	0	1.00
35557296--35557343	3	16.3	3	91	4	80	68	0	31	0	0.90
35577505--35577545	2	21.0	2	95	5	75	48	0	0	51	1.00
35578450--35578489	20	2.0	21	85	5	55	47	5	2	45	1.38
35606610--35606638	2	14.5	2	100	0	58	0	48	0	51	1.00
35610474--35610508	9	3.9	9	96	0	61	34	40	11	14	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35613529--35613572	17	2.5	17	89	10	63	47	0	2	50	1.13
35614065--35614112	21	2.2	22	82	10	55	43	10	0	45	1.38
35614276--35614305	15	1.9	15	93	6	51	63	6	0	30	1.20
35615234--35615277	23	1.9	23	85	0	61	43	2	2	52	1.26
35622899--35623003	54	1.9	54	100	0	210	31	19	19	30	1.96
35623601--35623656	28	2.0	28	89	6	87	39	12	16	32	1.85
35624722--35624783	29	2.1	30	82	8	74	59	1	14	24	1.44
35631646--35631676	2	15.5	2	100	0	62	51	0	48	0	1.00
35639674--35639738	27	2.5	27	85	5	80	50	0	7	41	1.31
35639951--35640363	119	3.5	119	80	9	474	49	14	5	30	1.65
35640119--35640334	110	2.0	109	87	4	310	49	15	3	31	1.62
35641370--35641619	138	1.8	137	82	4	306	51	12	6	30	1.63
35659189--35659262	21	3.5	21	75	14	80	35	10	33	20	1.87
35675031--35675056	12	2.2	12	100	0	52	7	42	7	42	1.62
35681614--35681643	4	7.5	4	92	0	51	46	23	3	26	1.68
35682191--35682325	72	1.9	71	86	4	191	25	21	15	37	1.93
35691063--35691105	20	2.2	19	80	15	52	69	9	6	13	1.35
35691022--35691955	261	3.6	255	84	5	1144	48	15	13	22	1.79
35695170--35695232	27	2.4	26	72	2	63	9	20	0	69	1.15
35698893--35699117	30	7.5	30	75	4	193	12	26	25	36	1.91
35699086--35699212	45	2.8	45	85	2	121	10	29	22	37	1.87
35699177--35699257	30	2.7	30	75	7	92	8	25	24	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35710035--35710098	7	9.0	7	80	1	74	46	1	1	50	1.20
35710117--35710153	2	18.5	2	100	0	74	48	0	0	51	1.00
35720056--35720101	24	1.9	24	82	8	58	50	21	19	8	1.75
35720061--35720118	24	2.4	25	75	21	61	50	18	20	10	1.76
35724431--35724482	16	3.2	17	75	8	54	5	23	0	71	1.07
35725934--35725968	14	2.4	15	90	4	54	40	0	0	60	0.97
35725883--35725974	33	2.8	32	80	9	98	41	2	0	56	1.11
35728252--35729013	33	23.1	33	85	1	909	21	21	22	35	1.96
35732318--35732360	9	5.0	8	81	13	50	44	0	0	55	0.99
35732667--35732730	28	2.4	26	82	10	67	31	0	4	64	1.14
35746214--35746265	24	2.2	24	96	0	95	38	17	13	30	1.88
35753678--35753731	23	2.4	23	78	3	65	11	24	11	53	1.68
35754577--35754610	17	1.9	18	88	5	52	67	2	8	20	1.31
35757586--35757623	19	2.0	19	89	0	58	52	0	0	47	1.00
35758010--35758040	16	1.9	16	93	0	53	54	0	0	45	0.99
35758044--35758135	16	6.1	15	71	18	75	44	1	2	52	1.20
35769822--35769916	48	2.0	48	97	0	181	18	17	18	44	1.87
35771347--35771380	17	1.9	18	88	5	52	70	2	8	17	1.25
35776440--35776501	29	2.1	29	82	11	74	56	1	4	37	1.30
35777593--35777636	24	2.0	21	83	16	54	47	13	4	34	1.63
35777554--35777646	26	3.6	26	68	18	68	52	9	4	33	1.54
35777709--35777767	31	1.9	31	96	0	109	45	8	10	35	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35777715--35777781	31	2.2	31	83	5	82	52	10	7	29	1.63
35798920--35798992	36	2.0	36	94	0	128	38	8	23	30	1.84
35806020--35806152	64	2.1	64	92	0	221	28	21	22	27	1.99
35819789--35819819	2	16.0	2	93	6	55	48	0	0	51	1.00
35838336--35838365	6	5.0	6	91	0	51	0	30	16	53	1.44
35842002--35842026	11	2.3	11	100	0	50	44	16	40	0	1.47
35847266--35847296	14	2.2	14	94	0	53	32	3	0	64	1.09
35855885--35856010	51	2.5	51	85	7	175	15	39	29	15	1.88
35869856--35869894	2	19.5	2	94	0	69	0	53	0	46	1.00
35875305--35875342	19	2.1	19	90	5	60	28	0	0	71	0.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91