genome.fa.s3.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  26  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8778708--8778822	57	2.0	57	87	0	167	42	8	9	39	1.68
8779348--8779378	13	2.3	14	94	5	55	32	22	6	38	1.80
8781398--8781596	73	2.7	73	80	3	229	38	14	21	25	1.91
8800311--8800361	23	2.3	22	86	3	75	41	13	21	21	1.87
8803180--8803225	21	2.2	20	84	7	56	15	21	6	56	1.61
8803185--8803225	21	1.9	22	90	5	66	17	24	7	51	1.70
8811131--8811174	22	2.0	22	95	0	79	38	25	9	27	1.86
8819497--8819599	38	2.6	40	86	3	147	24	37	15	22	1.93
8822646--8822773	39	3.4	39	81	8	131	26	13	35	25	1.93
8826454--8826548	43	2.2	43	90	0	145	22	34	18	24	1.96
8826468--8826565	43	2.3	43	85	0	124	20	37	18	23	1.94
8827906--8828135	55	4.2	55	87	0	298	23	14	33	28	1.94
8828202--8828233	7	4.6	7	100	0	64	31	0	28	40	1.57
8844901--8845098	73	2.7	72	79	6	209	38	14	21	25	1.91
8846239--8846270	16	2.0	16	93	0	55	28	0	34	37	1.57
8847004--8847251	121	2.1	120	98	0	478	31	9	18	39	1.83
8847566--8847635	29	2.3	31	87	4	99	24	10	18	47	1.79
8851427--8851455	2	14.5	2	100	0	58	51	0	0	48	1.00
8857908--8858120	54	3.9	54	92	0	354	25	40	13	20	1.88
8868324--8868417	39	2.4	40	85	1	127	32	25	21	20	1.97
8869922--8869967	20	2.4	20	79	17	53	19	15	0	65	1.28
8873945--8874063	45	2.6	47	81	5	134	45	20	15	18	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8877368--8877466	40	2.5	40	86	3	137	39	17	14	29	1.88
8877473--8877566	32	2.9	32	82	0	107	39	22	14	23	1.91
8877723--8877755	18	1.9	17	88	11	50	57	6	3	33	1.38
8877729--8877762	18	1.9	18	88	5	52	58	8	2	29	1.43
8881412--8881545	42	3.2	42	90	1	214	25	17	33	23	1.96
8882794--8882876	43	1.9	43	85	4	114	31	26	12	30	1.92
8888521--8888559	9	4.2	9	80	6	51	0	33	0	66	0.92
8888662--8888702	22	1.9	22	85	5	57	26	17	4	51	1.65
8895771--8895815	21	2.1	21	84	12	56	40	13	6	40	1.71
8904870--8905028	42	3.8	42	88	3	223	21	22	32	23	1.98
8910765--8910922	43	3.7	43	79	5	142	27	18	32	20	1.96
8910925--8910987	20	3.2	19	86	2	81	23	4	41	30	1.75
8910992--8911032	2	20.5	2	94	0	64	43	0	4	51	1.23
8920177--8920206	15	2.0	15	93	0	51	43	13	6	36	1.70
8926544--8926661	42	2.8	41	81	7	139	22	19	33	24	1.97
8926702--8926735	2	17.0	2	93	0	59	50	2	0	47	1.16
8931310--8931348	20	1.9	20	84	5	51	64	2	30	2	1.21
8940007--8940088	2	42.0	2	90	4	132	46	0	2	51	1.14
8941980--8942031	21	2.5	20	90	6	77	0	34	0	65	0.93
8942125--8942165	20	2.1	20	86	4	57	31	7	41	19	1.79
8945250--8945289	20	2.0	21	90	5	64	30	15	15	40	1.87
8948963--8949081	42	2.8	42	79	12	127	21	20	32	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8956741--8956780	2	20.0	2	84	0	53	45	2	2	50	1.28
8962092--8962127	2	18.0	2	88	0	54	44	2	2	50	1.31
8966289--8966325	15	2.5	15	91	4	58	10	2	0	86	0.67
8966289--8966328	20	2.0	20	90	9	64	12	2	0	85	0.71
8966289--8966328	14	2.7	15	85	14	57	12	2	0	85	0.71
8969210--8969311	38	2.7	38	82	1	123	20	19	37	22	1.95
8969330--8969392	32	2.0	31	93	6	101	19	1	25	52	1.54
8969385--8969419	2	17.5	2	93	0	61	45	0	2	51	1.16
8979793--8979823	2	15.5	2	100	0	62	48	0	0	51	1.00
8991126--8991219	49	1.9	49	93	0	161	26	17	34	22	1.96
8991472--8991528	21	2.7	21	83	0	69	33	21	24	21	1.97
9001556--9001703	60	2.5	60	82	4	165	35	19	20	25	1.96
9002065--9002180	43	2.7	43	85	6	155	20	36	18	25	1.95
9010089--9010134	20	2.3	20	100	0	92	30	4	19	45	1.70
9013624--9013746	43	2.8	44	84	8	137	27	36	13	21	1.92
9013664--9013751	43	2.0	43	93	0	149	25	36	15	22	1.94
9015813--9015911	36	2.8	36	87	0	144	12	14	47	26	1.78
9017374--9017411	19	2.0	20	89	5	60	15	34	10	39	1.82
9018244--9018369	37	3.4	37	87	5	182	29	10	37	23	1.88
9023873--9023922	23	2.4	20	75	24	50	64	0	14	22	1.29
9025006--9025117	37	3.0	35	92	5	170	29	10	34	25	1.89
9036930--9036976	14	3.1	15	78	9	60	2	23	2	72	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9037779--9037889	52	2.1	51	86	3	150	22	15	31	30	1.95
9040191--9040249	26	2.1	31	81	15	74	3	27	1	67	1.16
9056872--9057004	42	3.1	42	92	1	221	25	18	33	23	1.97
9061056--9061186	42	3.1	42	85	2	174	27	22	30	19	1.98
9061250--9061293	2	22.0	2	85	0	61	47	2	4	45	1.35
9068027--9068055	2	14.5	2	100	0	58	0	0	48	51	1.00
9070839--9071124	61	4.7	61	82	3	335	26	31	16	25	1.97
9070839--9071128	122	2.4	122	88	1	411	26	30	17	25	1.97
9073883--9073911	14	2.0	15	93	6	51	20	20	10	48	1.79
9077556--9077589	2	17.0	2	87	0	50	44	2	2	50	1.32
9077630--9077776	42	3.5	42	83	2	188	21	35	20	23	1.96
9077822--9077848	2	13.5	2	100	0	54	51	0	0	48	1.00
9085983--9086015	15	2.2	15	94	0	57	33	18	9	39	1.82
9087457--9087512	28	2.0	28	83	13	71	25	17	23	33	1.96
9088717--9088742	2	13.0	2	100	0	52	50	0	0	50	1.00
9089313--9089353	21	1.9	22	85	5	57	34	26	21	17	1.95
9095627--9095686	28	2.1	30	81	6	70	33	8	20	38	1.82
9095909--9095947	20	1.9	20	84	5	51	64	2	30	2	1.21
9095943--9095986	20	2.3	19	80	4	52	63	6	20	9	1.46
9101185--9101225	21	1.9	22	90	5	66	31	26	24	17	1.97
9103663--9103748	39	2.2	39	91	2	136	52	8	30	9	1.62
9106493--9106709	61	3.6	61	89	1	319	26	30	17	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9106744--9106776	2	16.5	2	100	0	66	48	0	0	51	1.00
9117284--9117367	35	2.4	35	91	0	132	28	9	36	25	1.87
9124200--9124258	26	2.1	30	81	15	72	66	3	28	1	1.18
9136498--9136538	21	1.9	22	90	5	66	51	7	24	17	1.70
9136498--9136542	20	2.2	21	84	11	58	55	6	22	15	1.63
9136496--9136543	21	2.3	20	79	10	60	56	6	22	14	1.61
9140247--9140338	46	2.0	46	91	2	141	26	9	16	46	1.77
9143400--9143438	21	1.9	20	89	5	60	23	0	12	64	1.28
9146150--9146248	43	2.3	43	82	6	112	25	18	36	20	1.95
9162127--9162204	41	1.9	41	91	0	129	25	19	33	21	1.97
9162250--9162276	2	13.5	2	100	0	54	51	0	0	48	1.00
9169265--9169342	41	1.9	41	91	0	129	25	19	33	21	1.97
9169388--9169416	2	14.5	2	100	0	58	51	0	0	48	1.00
9170341--9170519	94	1.9	93	90	1	286	34	9	15	40	1.80
9178605--9178716	50	2.2	50	93	0	188	39	16	8	35	1.79
9178698--9178757	20	3.0	20	85	4	77	38	16	8	36	1.79
9178711--9178759	20	2.5	20	89	0	80	34	16	8	40	1.78
9181578--9181619	19	2.2	19	83	8	50	59	0	19	21	1.38
9193301--9193335	2	17.5	2	93	0	61	45	0	2	51	1.16
9195425--9195456	16	2.0	16	93	0	55	40	6	9	43	1.62
9198374--9198425	28	2.0	26	85	11	70	17	32	25	25	1.97
9202990--9203044	28	2.0	28	85	0	74	20	30	20	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9211277--9211323	2	23.5	2	95	0	85	48	2	0	48	1.13
9211865--9211894	15	2.0	15	100	0	60	26	6	33	33	1.83
9218919--9219080	43	3.8	43	84	1	164	23	17	36	22	1.95
9219079--9219121	20	2.2	20	86	0	59	32	4	34	27	1.78
9227812--9227958	66	2.2	67	83	6	174	25	14	25	34	1.94
9234465--9234501	19	1.9	19	94	0	65	40	5	18	35	1.74
9236090--9236149	25	2.4	24	84	13	77	16	25	10	48	1.77
9236182--9236226	5	9.6	5	95	4	69	0	20	0	80	0.72
9236540--9236616	34	2.3	33	82	6	93	40	33	10	15	1.81
9241300--9241424	42	3.0	42	90	0	187	22	34	22	20	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91