genome.fa.s3.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  82  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30911309--30911379	31	2.3	31	83	7	83	52	1	7	39	1.38
30924397--30924424	5	5.6	5	100	0	56	35	64	0	0	0.94
30935959--30935987	3	9.7	3	100	0	58	31	0	34	34	1.58
30936142--30936192	27	2.0	26	85	14	70	1	25	7	64	1.31
30937353--30937384	3	10.7	3	100	0	64	65	0	0	34	0.93
30940330--30940408	37	2.1	37	100	0	158	32	7	24	35	1.83
30949563--30949621	23	2.8	21	80	12	66	37	10	0	52	1.35
30953564--30953602	21	1.9	20	84	5	51	48	2	2	46	1.29
30958940--30958982	22	2.0	22	85	0	59	27	4	18	48	1.68
30958952--30958998	22	2.1	22	84	0	58	25	6	19	48	1.72
30959025--30959068	23	1.9	23	85	0	61	25	6	31	36	1.82
30959065--30959108	23	1.9	23	85	0	61	31	6	22	38	1.81
30959136--30959189	21	2.5	21	84	3	72	46	18	7	27	1.76
30959224--30959275	22	2.4	22	80	0	59	57	21	1	19	1.50
30965812--30965848	2	18.5	2	100	0	74	51	0	0	48	1.00
30973257--30973351	45	2.1	45	84	1	120	43	4	14	37	1.65
30975980--30976121	75	1.9	75	88	2	216	40	4	7	47	1.52
30976454--30976482	14	2.1	14	100	0	58	41	0	0	58	0.98
30976703--30976746	15	2.9	15	86	0	61	34	11	25	29	1.91
30976690--30976746	30	1.9	30	85	0	78	36	10	22	29	1.88
30976955--30977046	32	2.8	32	86	1	121	31	2	0	66	1.04
30977072--30977122	24	2.1	25	82	10	61	25	3	0	70	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30977019--30977125	55	1.9	57	83	11	141	29	3	0	65	1.16
30977073--30977156	33	2.6	33	83	12	95	26	2	2	69	1.13
30977240--30977366	67	1.9	67	81	0	155	29	12	14	42	1.83
30979018--30979043	6	4.3	6	100	0	52	53	0	0	46	1.00
30981609--30981640	16	2.0	16	93	0	55	40	0	0	59	0.97
30984150--30984176	13	2.1	13	100	0	54	48	29	7	14	1.71
30988963--30988990	2	14.0	2	100	0	56	50	0	0	50	1.00
31007417--31007442	2	13.0	2	100	0	52	0	50	0	50	1.00
31009712--31009751	21	2.0	20	85	5	53	35	2	10	52	1.48
31015085--31015135	24	2.1	24	85	7	68	33	21	5	39	1.78
31019244--31019347	35	3.0	35	78	0	109	49	7	9	33	1.64
31035884--31035941	27	2.2	27	84	3	73	32	17	22	27	1.96
31040487--31040523	16	2.4	16	90	4	58	27	5	8	59	1.48
31042320--31042345	2	13.0	2	100	0	52	50	0	0	50	1.00
31042987--31043061	2	38.5	2	93	5	127	52	0	0	46	1.00
31044162--31044342	89	2.0	90	86	5	253	48	3	4	43	1.43
31046671--31046748	10	8.2	10	76	21	87	50	8	0	41	1.34
31046672--31046746	4	18.8	4	88	0	105	50	6	0	42	1.28
31046672--31046746	18	4.3	18	94	3	127	50	6	0	42	1.28
31058005--31058035	16	1.9	16	100	0	62	51	0	0	48	1.00
31057995--31058078	41	2.1	41	86	6	118	53	1	0	45	1.08
31057998--31058065	19	3.4	19	75	18	75	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31058146--31058317	49	3.5	49	75	10	172	51	5	0	42	1.28
31058174--31058317	27	5.7	26	71	21	119	51	5	0	43	1.25
31058125--31058276	25	6.2	24	71	14	87	55	5	0	38	1.29
31058145--31058327	98	1.9	99	88	2	280	51	6	0	41	1.30
31058420--31058594	22	7.9	22	70	13	83	50	2	1	46	1.21
31058432--31058594	47	3.7	46	71	21	157	51	2	0	45	1.19
31058552--31058618	15	4.3	15	68	27	50	46	1	0	52	1.09
31058536--31058618	22	3.5	23	83	9	96	48	1	0	50	1.08
31061339--31061378	18	2.2	18	100	0	80	22	10	17	50	1.76
31069332--31069383	14	3.8	13	78	17	52	76	1	19	1	0.97
31069333--31069362	15	1.9	15	93	6	51	73	0	26	0	0.84
31076388--31076990	324	1.9	322	88	4	926	41	12	11	33	1.80
31079487--31079522	2	18.0	2	100	0	72	50	0	0	50	1.00
31082126--31082351	117	1.9	118	81	7	273	30	13	18	36	1.90
31106251--31106344	45	2.1	45	83	0	116	44	5	5	44	1.49
31106382--31106495	22	5.1	22	70	11	79	48	1	5	44	1.35
31140417--31140463	19	2.5	19	85	0	67	61	0	2	36	1.08
31142208--31142281	29	2.6	29	82	0	85	24	20	29	25	1.99
31142166--31142472	141	2.2	141	87	1	472	26	22	24	27	2.00
31155295--31155374	2	40.5	2	84	2	90	43	1	7	47	1.39
31155295--31155384	16	5.7	16	84	1	101	42	2	8	46	1.47
31165802--31165901	52	2.0	48	94	5	164	47	0	36	16	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31166528--31166559	4	8.5	4	86	13	50	21	0	0	78	0.76
31169368--31169415	2	24.5	2	87	4	71	50	0	2	47	1.12
31191014--31191043	14	2.2	13	94	5	51	0	16	0	83	0.65
31197481--31197528	23	2.1	23	88	7	71	50	0	8	41	1.33
31198178--31198202	5	5.0	5	100	0	50	80	0	0	20	0.72
31205553--31205829	150	1.8	150	86	3	396	31	11	19	36	1.88
31206029--31206072	17	2.6	17	88	0	70	70	0	2	27	0.99
31207177--31207276	33	2.7	36	77	16	107	66	0	3	31	1.07
31207826--31207901	22	3.5	22	82	10	86	27	5	17	50	1.67
31208642--31208688	15	3.1	15	81	0	58	31	23	2	42	1.66
31209598--31209744	75	2.0	71	90	5	231	21	21	19	38	1.93
31212072--31212147	30	2.6	29	76	18	75	60	2	1	35	1.19
31216660--31216722	33	1.9	33	90	0	99	14	23	7	53	1.66
31220616--31220731	59	2.0	60	91	1	189	35	16	7	40	1.77
31221446--31221520	37	2.0	37	92	0	123	41	14	16	28	1.87
31222672--31222744	29	2.5	29	77	2	74	36	9	12	41	1.75
31222742--31222878	29	5.0	28	77	14	126	32	16	12	38	1.85
31222912--31223032	45	2.7	45	84	0	125	32	19	14	33	1.92
31223192--31223216	13	1.9	13	100	0	50	40	0	0	60	0.97
31233638--31233680	19	2.3	19	91	0	68	53	0	0	46	1.00
31233917--31233972	24	2.3	23	76	8	58	55	1	1	41	1.21
31240347--31240420	3	24.7	3	97	0	130	32	2	64	0	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31250164--31250226	28	2.2	30	86	11	87	30	14	9	46	1.76
31260775--31260809	2	17.5	2	100	0	70	48	0	0	51	1.00
31269965--31270118	53	3.0	51	78	10	152	37	5	6	50	1.53
31280976--31281015	21	1.9	21	85	10	55	45	5	0	50	1.23
31293862--31293900	18	2.2	19	86	9	55	38	23	20	17	1.93
31294000--31294032	3	11.3	3	93	6	59	66	0	33	0	0.92
31301146--31301210	2	36.0	2	80	20	81	50	0	0	49	1.00
31301145--31301209	11	5.1	13	77	22	75	52	0	0	47	1.00
31306036--31306074	17	2.3	17	91	8	62	7	10	0	82	0.86
31309166--31309204	20	2.0	20	84	0	51	46	10	0	43	1.37
31318297--31318351	24	2.3	23	75	9	56	18	3	50	27	1.63
31318330--31318994	123	5.5	123	86	4	919	15	8	52	23	1.70
31318441--31318916	234	2.0	234	88	0	711	15	9	52	22	1.70
31318330--31318994	357	1.9	354	90	0	1051	15	8	52	23	1.70
31318968--31319015	3	16.0	3	86	0	69	4	2	62	31	1.26
31319104--31319147	3	14.7	3	86	9	63	4	0	68	27	1.09
31319101--31319149	9	5.4	9	85	9	55	8	0	67	24	1.18
31321771--31321839	31	2.1	34	84	12	92	33	2	5	57	1.37
31323311--31323345	18	1.9	18	94	0	61	14	11	54	20	1.70
31323773--31323941	93	1.8	93	84	2	232	13	8	54	23	1.66
31323931--31323975	18	2.5	18	85	0	63	8	2	57	31	1.41
31323900--31323970	30	2.4	30	73	4	72	12	4	53	29	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31333580--31333604	2	12.5	2	100	0	50	0	48	0	52	1.00
31339879--31339908	8	3.8	8	95	0	51	80	0	0	20	0.72
31339955--31340070	26	4.4	26	82	13	148	52	0	0	45	1.06
31339955--31340091	26	5.7	23	78	16	113	51	0	0	46	1.06
31340053--31340088	16	2.2	16	95	0	63	52	0	2	44	1.15
31339973--31340099	23	5.3	23	78	14	82	52	0	0	44	1.12
31341449--31341541	33	2.8	32	85	6	107	67	3	1	27	1.12
31341442--31341529	6	13.7	6	68	13	50	70	1	1	27	1.01
31341442--31341557	39	3.1	37	77	14	114	67	2	1	28	1.14
31341751--31341793	15	2.9	15	85	0	50	44	9	2	44	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91