genome.fa.s3.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  55  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19601739--19602443	377	1.9	376	87	2	1056	41	8	6	43	1.61
19613469--19613516	2	24.0	2	86	0	69	45	2	2	50	1.25
19615367--19615530	60	2.7	60	80	3	188	25	28	18	28	1.98
19616347--19616525	74	2.4	73	80	4	207	44	18	16	21	1.87
19621076--19621100	3	8.3	3	100	0	50	68	0	32	0	0.90
19632400--19632600	74	2.7	73	83	3	233	43	14	17	24	1.87
19634723--19634761	2	19.5	2	94	0	69	46	0	2	51	1.14
19636129--19636167	13	2.9	13	88	3	51	30	0	10	58	1.31
19636461--19636617	72	2.2	72	95	0	287	38	19	20	22	1.94
19639498--19639579	30	2.7	30	77	5	85	39	17	17	26	1.91
19639594--19639712	37	3.4	36	78	15	142	24	13	25	36	1.92
19639629--19639687	30	1.9	31	96	3	111	22	15	23	38	1.92
19647415--19647477	2	31.5	2	100	0	126	50	0	0	49	1.00
19662605--19662744	34	4.1	34	84	2	147	27	20	20	31	1.97
19670680--19670798	42	2.8	42	79	0	112	22	28	21	27	1.99
19674637--19674755	42	2.8	42	79	0	112	22	28	21	27	1.99
19679362--19679392	14	2.1	15	94	5	55	64	12	0	22	1.27
19694555--19694613	29	2.0	29	90	0	91	30	11	16	40	1.85
19711764--19711815	25	2.1	25	88	0	77	30	21	15	32	1.94
19713174--19713216	12	3.6	12	83	0	50	48	0	27	23	1.51
19717179--19717231	21	2.5	21	87	0	79	43	16	13	26	1.85
19717173--19717261	21	4.2	20	73	9	70	39	15	17	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19718938--19719119	84	2.2	84	91	0	292	23	36	15	24	1.93
19720672--19720703	3	10.7	3	93	0	55	37	0	28	34	1.57
19722091--19722149	21	2.9	21	75	7	68	27	3	6	62	1.36
19724837--19725028	92	2.1	92	88	1	278	41	10	13	34	1.79
19731653--19731721	35	2.0	35	91	0	111	31	15	23	28	1.95
19733641--19733774	71	1.9	71	85	0	187	22	17	21	38	1.93
19738626--19738668	17	2.7	15	82	10	50	25	0	11	62	1.29
19739702--19739740	9	4.3	9	83	0	51	41	17	10	30	1.83
19739702--19739740	18	2.2	18	95	0	69	41	17	10	30	1.83
19739826--19739889	25	2.5	24	80	14	67	59	6	1	32	1.32
19741651--19741695	22	2.0	22	82	0	54	24	17	22	35	1.95
19743324--19743402	40	2.0	39	97	0	140	49	10	13	25	1.74
19743526--19743621	38	2.5	39	82	3	104	21	34	17	26	1.96
19745350--19745392	21	2.0	21	86	0	59	48	6	27	16	1.71
19754992--19755115	65	1.9	65	83	3	160	29	24	18	28	1.98
19758900--19759004	42	2.5	42	80	1	111	22	28	19	29	1.98
19758984--19759067	42	2.0	42	83	0	105	25	28	14	32	1.94
19763101--19763156	27	2.1	27	100	0	112	50	7	17	25	1.72
19765125--19765222	38	2.5	38	81	6	108	25	39	15	19	1.91
19767449--19767535	33	2.5	35	79	5	97	34	26	14	24	1.94
19769368--19769407	21	1.9	21	89	0	62	35	15	22	27	1.94
19769629--19769665	17	2.2	16	90	4	56	72	8	0	18	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19775987--19776073	2	42.5	2	95	4	156	48	1	0	49	1.08
19776173--19776278	33	3.1	33	80	4	104	28	32	15	24	1.95
19786758--19786791	2	17.0	2	87	0	50	47	2	2	47	1.32
19786832--19786957	42	3.0	42	86	0	180	23	34	21	20	1.96
19787760--19787801	19	2.2	19	87	8	59	45	4	33	16	1.69
19788407--19788462	2	28.0	2	96	0	103	50	1	0	48	1.11
19788485--19788557	35	2.1	35	89	0	110	28	34	12	24	1.92
19788491--19788568	35	2.2	35	83	0	93	28	39	11	20	1.87
19789807--19789848	19	2.2	19	91	0	66	38	9	35	16	1.81
19794647--19794719	35	2.1	35	92	0	119	30	34	10	24	1.90
19794653--19794730	35	2.2	35	86	0	102	29	39	10	20	1.85
19795552--19795580	10	2.9	10	100	0	58	41	37	0	20	1.53
19800715--19800744	12	2.5	12	94	0	51	0	30	0	70	0.88
19801186--19801221	17	2.1	17	100	0	72	38	11	11	38	1.76
19806155--19806190	2	18.5	2	88	5	56	52	2	0	44	1.15
19809284--19809380	46	2.1	46	81	11	110	38	2	13	46	1.55
19810794--19810823	2	15.0	2	92	0	51	46	0	3	50	1.18
19810864--19810960	42	2.3	40	84	10	131	24	31	20	22	1.98
19810879--19810989	42	2.6	42	87	2	143	23	31	19	25	1.98
19821231--19821349	42	2.8	42	83	0	148	26	36	18	18	1.94
19822403--19822574	35	5.0	35	75	11	122	34	18	23	23	1.96
19824101--19824143	22	2.0	22	100	0	86	18	18	41	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19831438--19831468	16	1.9	16	93	0	53	32	35	6	25	1.82
19834231--19834356	42	3.0	42	86	0	180	19	33	23	23	1.97
19836425--19836588	80	2.0	80	82	4	197	32	10	23	32	1.89
19838127--19838344	80	2.7	80	88	0	303	31	22	9	35	1.87
19847659--19847969	68	4.6	68	83	4	312	34	18	11	35	1.87
19847845--19847990	68	2.1	68	81	2	177	36	20	8	34	1.83
19849407--19849655	35	7.1	35	79	3	261	43	12	7	36	1.71
19849406--19849655	71	3.6	70	80	5	274	43	12	7	36	1.71
19849387--19849662	142	2.0	139	85	3	374	43	13	6	36	1.71
19868018--19868143	43	3.0	43	87	5	159	26	18	31	23	1.97
19870938--19871193	35	7.3	35	80	5	259	44	14	6	34	1.71
19870938--19871186	107	2.4	106	81	4	265	43	14	6	34	1.72
19872746--19872792	15	3.2	15	80	14	53	70	10	0	19	1.16
19874530--19874609	31	2.7	28	81	11	90	33	7	25	33	1.84
19874542--19874609	31	2.3	28	87	7	91	32	8	23	35	1.86
19881510--19881556	22	2.1	22	100	0	94	36	14	17	31	1.90
19883034--19883108	14	5.5	14	77	6	91	58	0	1	40	1.06
19883030--19883105	27	2.8	27	95	0	143	61	0	1	36	1.04
19884662--19884769	35	3.1	35	90	0	162	26	9	34	29	1.88
19885384--19885413	2	15.0	2	100	0	60	50	0	0	50	1.00
19886152--19886455	29	10.8	28	81	10	334	35	13	10	40	1.79
19886195--19886445	138	1.8	138	88	6	391	36	13	9	41	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19886217--19886433	109	2.0	109	90	5	341	35	14	9	40	1.78
19888277--19888412	43	3.2	42	84	6	157	22	35	16	25	1.95
19889223--19889255	10	3.1	11	86	8	50	27	9	33	30	1.88
19895521--19895611	43	2.1	43	89	0	137	24	35	13	27	1.92
19898151--19898255	38	2.7	39	83	4	131	21	19	38	20	1.94
19909145--19909294	54	2.8	54	90	0	237	25	42	13	19	1.87
19909560--19909587	2	14.0	2	100	0	56	50	0	0	50	1.00
19920043--19920091	2	24.0	2	95	4	89	48	2	0	48	1.12
19920132--19920417	42	6.8	42	81	4	319	24	31	20	24	1.98
19920132--19920423	84	3.5	84	87	2	401	23	31	20	23	1.98
19924222--19924437	54	4.0	54	87	0	315	23	43	13	19	1.86
19924407--19924590	41	4.6	41	78	14	165	23	33	16	25	1.96
19924441--19924590	82	1.9	78	83	8	194	24	34	16	26	1.95
19929543--19929605	27	2.3	27	88	0	90	25	28	26	19	1.98
19931104--19931462	28	12.5	27	83	9	380	39	14	10	35	1.80
19931124--19931462	84	4.0	85	87	6	429	38	15	10	35	1.81
19931125--19931462	141	2.4	143	87	6	470	38	15	10	35	1.81
19931104--19931461	57	6.2	57	83	8	390	39	14	10	35	1.80
19931436--19931597	81	2.0	80	97	1	306	40	16	4	38	1.70
19933551--19933671	30	4.1	28	73	17	95	33	13	24	28	1.93
19933551--19933648	30	3.3	30	79	12	96	33	15	22	28	1.94
19939375--19939443	28	2.7	24	73	18	66	13	30	14	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19939448--19939503	5	11.6	5	92	3	89	0	21	0	78	0.75
19939818--19939900	34	2.4	34	87	0	130	38	32	12	16	1.86
19949869--19949928	30	2.1	29	81	6	68	31	8	21	38	1.83
19956624--19956790	84	2.0	83	98	0	316	28	25	8	37	1.86
19958008--19958051	18	2.4	18	80	0	52	18	22	22	36	1.95
19958251--19958445	58	3.5	57	87	5	281	28	13	17	40	1.88
19958251--19958450	53	3.6	55	88	4	253	28	14	17	41	1.87
19958755--19958793	19	2.1	19	90	0	60	51	0	33	15	1.44
19961249--19961305	19	3.0	19	85	10	73	28	1	0	70	0.98
19962496--19962597	28	3.5	28	82	6	105	37	7	5	49	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91