genome.fa.s3.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  48  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16877748--16877805	22	2.6	22	86	0	80	15	13	29	41	1.86
16878537--16879009	206	2.3	206	88	1	682	19	11	27	41	1.87
16883192--16883253	23	2.7	23	69	0	70	32	30	9	27	1.89
16884308--16884342	15	2.3	15	90	0	52	14	14	22	48	1.79
16886036--16886341	61	5.0	61	83	4	400	32	20	11	35	1.89
16886028--16886356	124	2.7	122	92	1	534	32	19	11	35	1.88
16888507--16888569	23	2.7	23	90	4	101	30	30	12	26	1.93
16888557--16888790	69	3.4	69	71	2	209	35	25	11	27	1.91
16888756--16888806	23	2.2	23	92	0	84	39	21	11	27	1.88
16888544--16888808	69	3.8	69	70	4	203	35	24	11	28	1.90
16888854--16888928	23	3.2	23	84	3	87	29	25	13	32	1.93
16888886--16888937	23	2.3	23	86	0	68	34	25	9	30	1.88
16889293--16889353	26	2.3	26	83	5	70	59	8	13	19	1.59
16899240--16899359	58	2.1	57	96	1	222	35	9	17	37	1.82
16906726--16906857	42	3.1	41	91	4	201	23	15	34	26	1.94
16909129--16909198	4	16.8	4	77	16	54	0	25	0	74	0.82
16909122--16909204	10	8.4	10	70	17	57	0	26	0	73	0.83
16909121--16909207	31	2.7	31	87	8	113	0	26	0	73	0.83
16919414--16919540	44	2.9	44	84	4	175	26	22	22	28	1.99
16919429--16919625	44	4.5	44	78	5	164	28	21	20	28	1.98
16919554--16919649	45	2.1	45	84	0	129	32	27	16	23	1.96
16919428--16919657	44	5.2	45	78	6	141	29	23	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16923415--16923472	21	2.7	22	83	5	82	18	10	25	44	1.82
16923484--16923542	23	2.6	23	83	0	64	35	27	11	25	1.91
16923491--16923546	23	2.4	23	87	0	85	33	28	10	26	1.90
16923503--16923786	26	11.8	25	74	13	199	37	27	10	24	1.89
16923507--16923804	95	3.1	95	86	1	418	37	26	11	23	1.90
16923772--16923831	21	2.9	21	87	9	95	36	26	18	18	1.94
16929434--16929506	38	1.9	37	83	8	94	38	12	8	41	1.73
16931527--16931600	30	2.3	31	80	13	80	24	8	0	67	1.17
16931527--16931607	27	2.9	27	69	12	65	23	7	0	69	1.14
16933070--16933143	30	2.3	31	80	13	80	24	8	0	67	1.17
16933070--16933150	27	2.9	27	69	12	65	23	7	0	69	1.14
16935716--16935741	13	2.0	13	100	0	52	46	0	7	46	1.31
16943341--16943566	19	11.7	18	66	23	56	53	2	2	41	1.27
16943315--16943678	152	2.4	152	88	5	547	54	3	2	39	1.28
16943573--16943628	27	2.0	28	86	10	80	55	1	0	42	1.10
16943577--16943635	28	2.1	27	81	9	66	59	1	0	38	1.08
16943648--16943723	26	2.9	26	82	3	91	57	0	2	39	1.12
16943703--16943734	10	3.1	11	86	13	50	75	0	0	25	0.81
16947458--16947482	13	1.9	13	100	0	50	44	0	8	48	1.32
16953122--16953169	16	3.0	16	75	0	51	52	0	4	43	1.20
16953163--16953850	250	2.7	250	81	4	751	35	11	5	47	1.63
16954478--16955444	251	3.9	251	84	3	1135	48	7	10	32	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16958843--16958886	17	2.6	17	85	0	61	72	0	2	25	0.96
16975956--16975993	20	1.9	19	89	5	58	55	2	0	42	1.14
16977920--16977983	28	2.2	29	83	2	76	42	17	9	31	1.81
16985100--16985134	19	1.9	19	88	11	56	62	8	2	25	1.38
16992959--16993009	24	2.1	24	82	7	59	45	11	7	35	1.70
16999292--16999445	42	3.7	41	86	3	209	20	33	23	22	1.97
17000235--17000278	19	2.4	18	75	20	54	50	6	29	13	1.68
17001405--17001444	19	2.1	19	90	0	62	45	0	0	55	0.99
17003089--17003115	2	13.5	2	100	0	54	51	0	0	48	1.00
17003324--17003361	19	2.0	19	100	0	76	15	15	52	15	1.75
17003270--17003415	73	2.0	73	93	0	247	18	15	45	20	1.85
17009462--17009503	7	6.4	7	84	13	54	73	0	26	0	0.83
17009462--17009503	16	2.6	16	88	3	57	73	0	26	0	0.83
17009543--17009580	18	2.1	18	95	5	67	65	0	0	34	0.93
17009541--17009584	22	2.0	22	95	4	81	65	0	0	34	0.93
17009854--17009891	2	18.5	2	89	5	58	50	0	2	47	1.15
17010204--17010497	60	4.9	60	90	1	453	27	17	30	24	1.97
17010202--17010497	61	4.9	61	90	1	452	27	16	30	24	1.97
17011378--17011435	2	30.5	2	89	10	95	51	0	0	48	1.00
17014505--17014566	21	2.9	22	81	11	67	33	12	25	27	1.93
17014627--17014724	21	4.8	20	82	3	106	29	13	27	29	1.94
17014527--17014823	163	1.8	163	83	4	402	34	14	22	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17014690--17014917	101	2.3	101	78	7	248	36	15	18	28	1.92
17014891--17014965	21	3.7	20	80	3	78	28	17	26	28	1.98
17014909--17014958	20	2.4	21	80	3	66	30	20	24	26	1.98
17014812--17015089	144	1.9	143	87	3	407	35	16	19	27	1.94
17014936--17015211	122	2.3	123	85	3	360	35	15	21	27	1.94
17015163--17015259	21	4.6	21	83	6	126	28	12	30	27	1.93
17015035--17015363	163	2.0	164	84	4	432	33	14	23	28	1.94
17015412--17016815	61	22.9	60	77	6	688	27	19	18	34	1.95
17015412--17016815	123	11.5	123	77	7	947	27	19	18	34	1.95
17015438--17016815	184	7.5	183	78	9	1133	27	19	18	34	1.95
17015520--17016356	276	3.0	275	90	3	1206	26	19	18	34	1.95
17017930--17017958	11	2.5	12	94	5	51	0	24	0	75	0.80
17023123--17023182	16	3.9	16	75	16	56	20	1	1	76	0.96
17023155--17023196	22	2.0	22	85	4	59	16	2	2	78	0.96
17039634--17039679	20	2.3	20	85	7	58	58	0	2	39	1.10
17046967--17047004	20	1.9	20	88	0	58	65	10	15	7	1.45
17050587--17050628	20	2.1	20	86	8	59	47	11	0	40	1.40
17052434--17052486	28	1.9	27	88	3	79	33	18	18	28	1.95
17062907--17062944	20	1.9	20	94	0	67	28	5	18	47	1.70
17062997--17063049	28	1.9	27	88	3	79	35	20	16	26	1.94
17074451--17074491	11	3.5	12	83	12	50	60	0	29	9	1.28
17080534--17080571	19	2.0	19	100	0	76	26	0	31	42	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17080614--17080673	28	2.1	28	84	6	77	31	16	21	30	1.96
17085124--17085169	20	2.3	20	92	0	74	30	4	19	45	1.70
17085214--17085272	28	2.1	28	84	6	75	32	23	22	22	1.98
17088760--17088802	20	2.2	20	88	8	63	37	4	0	58	1.19
17094876--17094909	2	17.0	2	100	0	68	50	0	0	50	1.00
17106177--17106403	61	3.8	61	81	3	244	33	10	17	38	1.84
17106248--17106343	21	4.7	21	73	17	85	36	10	18	34	1.85
17107018--17107212	61	3.2	61	86	0	257	34	9	17	38	1.82
17107057--17107152	21	4.7	21	74	14	92	36	9	18	35	1.83
17105623--17107244	809	2.0	809	99	0	3199	32	11	17	38	1.86
17110859--17110893	3	11.7	3	87	0	52	34	31	0	34	1.58
17112290--17112329	11	3.6	11	83	12	55	77	2	0	20	0.88
17112295--17112329	18	2.0	17	88	5	52	77	2	0	20	0.90
17112803--17112855	21	2.6	21	90	3	72	24	13	22	39	1.90
17112809--17112855	21	2.2	21	96	0	85	25	12	23	38	1.90
17116896--17116920	2	12.5	2	100	0	50	52	0	0	48	1.00
17129456--17129506	24	2.1	24	85	0	66	27	11	17	43	1.84
17134642--17134679	18	2.1	18	85	9	51	50	0	0	50	1.00
17134672--17134734	26	2.5	24	80	16	83	41	1	1	55	1.19
17134667--17134749	26	3.2	24	73	21	71	40	2	1	55	1.21
17134763--17134828	27	2.7	26	80	17	72	48	1	1	48	1.20
17134789--17135033	22	12.4	20	66	22	85	42	2	1	53	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17134709--17135090	154	2.5	154	87	5	567	39	2	1	55	1.24
17134741--17134996	80	3.3	78	69	16	215	40	1	1	55	1.20
17134711--17135076	155	2.4	155	89	3	569	39	2	1	56	1.24
17135100--17135241	24	6.3	23	67	19	77	41	1	2	54	1.24
17135147--17135210	27	2.5	25	82	9	69	40	3	3	53	1.33
17135183--17135304	22	5.7	22	70	17	87	43	0	2	53	1.19
17135171--17135337	42	4.0	42	74	15	148	41	1	2	54	1.23
17135219--17135293	40	2.0	40	84	10	104	37	0	2	60	1.11
17135100--17135335	110	2.1	109	83	7	282	40	1	2	55	1.23
17135516--17135568	26	2.0	26	88	0	79	39	3	3	52	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91