genome.fa.s3.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  23  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7678032--7678201	67	2.5	67	82	3	200	25	13	25	34	1.93
7678689--7678724	17	2.1	17	89	0	54	11	36	22	30	1.89
7684581--7684621	19	2.2	20	82	13	59	53	0	0	46	1.00
7686276--7686406	42	3.1	42	89	0	199	21	24	31	22	1.98
7686276--7686439	42	3.9	41	83	3	157	21	22	31	23	1.98
7686276--7686433	84	1.9	84	83	0	208	21	22	32	23	1.98
7696204--7696326	42	2.9	42	77	7	133	21	21	31	25	1.98
7704035--7704214	67	2.7	67	83	8	233	37	27	10	24	1.88
7704066--7704176	32	3.4	32	75	16	118	39	28	8	23	1.83
7711638--7711683	18	2.5	19	75	10	51	47	0	0	52	1.00
7712114--7712176	26	2.4	26	76	10	67	44	1	1	52	1.20
7717052--7717102	26	2.0	26	81	14	61	56	1	5	35	1.35
7718311--7718359	25	1.9	26	84	12	66	40	4	10	44	1.57
7722692--7722721	9	3.3	9	95	0	51	46	16	10	26	1.78
7734291--7734822	38	14.3	38	75	8	355	40	18	14	26	1.88
7734291--7734770	150	3.2	151	78	8	384	41	19	13	25	1.89
7734681--7734951	140	1.9	139	82	3	330	41	16	14	27	1.87
7734829--7734956	38	3.4	37	76	9	114	40	15	14	28	1.87
7735342--7735445	53	1.9	55	82	3	131	36	21	10	31	1.87
7736544--7736934	38	10.3	37	79	8	340	41	18	14	25	1.88
7736544--7736934	76	5.2	77	80	7	399	41	18	14	25	1.88
7736544--7736934	114	3.4	112	79	9	391	41	18	14	25	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7739922--7740016	38	2.5	38	89	3	138	44	14	15	25	1.85
7739922--7740034	38	3.0	38	85	5	113	43	17	15	23	1.87
7740013--7740055	21	2.0	21	86	8	61	41	32	11	13	1.81
7739983--7740093	59	1.9	58	84	1	150	44	22	11	21	1.85
7740087--7740377	38	7.7	38	73	5	187	38	16	16	28	1.90
7740047--7740377	76	4.4	76	75	7	235	39	16	16	28	1.90
7740051--7740373	114	2.8	113	73	8	287	39	16	15	28	1.89
7741177--7741243	33	2.0	33	82	5	82	35	17	7	38	1.78
7741192--7741240	17	2.9	18	71	22	52	36	12	6	44	1.67
7741818--7741862	23	2.0	23	90	0	72	20	8	8	62	1.51
7757310--7757354	23	2.0	23	86	0	63	17	6	11	64	1.46
7762322--7762368	2	23.5	2	100	0	94	51	0	0	48	1.00
7763448--7763489	15	2.7	15	88	3	57	47	0	0	52	1.00
7763920--7763962	21	2.1	21	91	4	70	27	0	0	72	0.85
7763924--7763954	16	2.0	16	93	6	55	25	0	0	74	0.82
7771200--7771353	79	1.9	79	89	0	236	38	12	18	29	1.88
7771609--7771746	74	1.9	74	92	0	231	44	10	5	38	1.64
7772572--7772604	2	16.5	2	93	0	57	0	3	45	51	1.16
7779515--7779557	16	2.8	15	83	13	52	41	23	16	18	1.89
7783223--7783304	31	2.6	31	84	3	103	29	18	21	30	1.97
7786421--7786562	31	4.6	31	85	0	176	38	22	17	21	1.93
7786683--7786759	31	2.5	31	97	0	145	24	15	33	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7786703--7786874	93	1.8	93	80	2	202	26	16	28	28	1.97
7788648--7789070	31	13.6	31	75	4	314	37	21	17	24	1.94
7788651--7788956	125	2.5	124	80	4	314	37	20	16	25	1.93
7788688--7788976	156	1.9	156	80	4	350	37	22	16	23	1.94
7789305--7789629	156	2.1	156	85	0	434	29	20	18	32	1.96
7789305--7789689	156	2.5	155	81	4	353	30	19	18	31	1.96
7791293--7791626	31	10.8	31	87	1	427	35	22	18	23	1.95
7792252--7792665	47	8.8	47	83	3	485	21	32	17	27	1.96
7792633--7792689	24	2.4	24	100	0	114	22	33	15	28	1.95
7792586--7792736	71	2.1	71	85	7	200	19	33	18	28	1.96
7792544--7792771	118	1.9	118	83	1	296	22	33	16	27	1.95
7792493--7792829	165	2.0	165	87	0	485	22	33	16	27	1.95
7792657--7793003	47	7.4	47	78	2	356	21	32	16	28	1.95
7792445--7792865	212	2.0	212	83	3	535	22	33	16	27	1.96
7792401--7792907	259	2.0	259	84	2	660	22	33	16	28	1.95
7792658--7793003	94	3.7	94	83	1	433	21	32	16	28	1.95
7795742--7795784	18	2.4	18	85	11	61	23	2	0	74	0.93
7795745--7795787	17	2.4	18	88	3	61	25	2	0	72	0.97
7799073--7799137	33	2.0	33	90	0	103	33	4	16	44	1.69
7802861--7802902	21	2.0	21	86	9	59	42	19	9	28	1.82
7805296--7805346	2	25.5	2	100	0	102	50	0	0	49	1.00
7809165--7809320	57	2.7	57	84	2	206	35	19	12	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7815640--7815678	21	1.9	20	84	5	51	38	30	5	25	1.78
7816452--7816527	22	3.5	21	79	12	73	39	28	11	19	1.87
7816598--7816653	22	2.5	22	76	0	58	41	23	14	21	1.89
7820553--7820602	26	1.9	26	83	0	64	4	26	6	64	1.35
7825373--7825413	21	1.9	22	85	14	59	60	4	14	19	1.51
7832004--7832028	13	1.9	13	100	0	50	44	0	8	48	1.32
7847159--7847209	26	2.0	26	84	0	66	39	1	1	56	1.22
7847198--7847270	17	4.2	17	71	13	60	45	0	2	52	1.15
7847219--7847309	41	2.2	43	82	11	109	47	1	2	49	1.21
7847246--7847294	25	2.0	24	88	4	71	46	2	0	51	1.12
7860813--7860890	29	2.6	30	80	6	79	58	0	3	37	1.16
7861854--7861910	24	2.4	24	93	0	96	43	5	15	35	1.70
7864580--7864626	2	23.5	2	100	0	94	51	0	0	48	1.00
7864389--7864831	239	1.9	238	94	0	780	38	14	13	32	1.86
7864860--7864943	35	2.4	35	87	0	114	29	36	9	23	1.87
7864997--7865043	19	2.5	19	96	0	85	23	51	17	8	1.72
7866928--7866965	13	2.9	13	100	0	76	47	7	0	44	1.32
7869109--7869150	19	2.2	19	91	0	66	42	7	30	19	1.78
7876713--7876753	21	2.0	21	85	0	55	73	0	9	17	1.09
7876946--7876996	26	1.9	27	88	4	77	68	0	31	0	0.90
7884386--7884425	14	3.0	13	85	14	55	70	0	30	0	0.88
7884386--7884426	12	3.2	12	86	6	55	68	0	31	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7884560--7884704	63	2.3	63	83	7	170	51	6	39	3	1.44
7886436--7886466	11	2.8	11	95	0	53	29	0	9	61	1.28
7897945--7897987	17	2.5	17	88	0	59	4	16	6	72	1.24
7903277--7903309	17	1.9	17	93	0	57	9	6	3	81	0.95
7912927--7912958	11	2.9	11	95	0	55	34	12	15	37	1.85
7916685--7916805	37	3.3	36	90	4	188	23	38	10	27	1.88
7931129--7931163	17	2.1	17	88	0	52	34	22	37	5	1.78
7932084--7932129	22	2.2	20	84	7	56	30	13	23	32	1.93
7932564--7932690	38	3.4	38	76	1	112	40	13	11	35	1.80
7934632--7934734	30	3.5	30	82	13	117	35	4	1	57	1.31
7934824--7934863	13	3.1	12	86	13	53	45	0	5	50	1.23
7935040--7935129	2	46.5	2	83	14	109	48	1	1	47	1.16
7938822--7938863	2	21.5	2	95	4	77	50	0	0	50	1.00
7953731--7953771	21	1.9	22	95	5	75	51	0	0	48	1.00
7954034--7954086	26	2.0	26	85	3	70	39	0	3	56	1.17
7954008--7954182	82	2.1	82	83	8	221	38	0	4	57	1.17
7954231--7954293	19	3.2	19	77	18	74	41	0	1	57	1.08
7954261--7954291	16	1.9	16	93	0	53	45	0	3	51	1.17
7957747--7957776	8	3.8	8	100	0	60	53	0	0	46	1.00
7958823--7958847	13	1.9	13	100	0	50	44	0	8	48	1.32
7961599--7961625	14	1.9	14	100	0	54	66	7	0	25	1.17
7964099--7964123	13	1.9	13	100	0	50	48	8	0	44	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7965498--7965535	19	2.0	19	89	0	58	42	26	2	28	1.69
7967484--7967566	16	5.4	16	74	5	64	26	0	43	30	1.55
7967484--7967544	24	2.6	24	89	2	97	22	0	45	31	1.53
7967825--7967985	12	12.5	12	64	24	62	21	2	8	67	1.30
7967825--7967953	13	9.3	13	67	20	57	22	3	7	66	1.32
7967857--7967953	14	6.6	15	72	25	66	26	3	7	62	1.36
7967934--7967986	21	2.4	21	82	14	63	18	1	9	69	1.25
7968032--7968069	16	2.5	15	87	12	51	78	2	0	18	0.86
7973829--7973871	21	2.0	21	90	0	68	30	13	30	25	1.94
7977796--7977836	21	2.1	19	86	9	55	29	0	9	60	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91