genome.fa.s3.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  56  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19962668--19962708	18	2.2	20	91	8	68	68	12	0	19	1.21
19963786--19963823	13	2.7	15	84	12	53	44	0	0	55	0.99
19965404--19965439	4	9.0	4	93	0	63	52	22	0	25	1.47
19971677--19971795	61	2.0	61	86	0	166	31	11	17	38	1.86
19972417--19972486	36	1.9	36	85	0	95	35	21	14	28	1.92
19975920--19976004	31	2.7	31	88	0	125	34	28	11	25	1.91
19981605--19981644	20	2.1	19	95	4	71	37	20	15	27	1.92
19981608--19981651	20	2.2	20	88	8	63	38	18	13	29	1.89
20000090--20000130	2	20.5	2	100	0	82	51	0	0	48	1.00
20000195--20000267	35	2.1	35	82	10	87	27	38	10	23	1.88
20010013--20010059	24	1.9	24	82	4	58	63	8	4	23	1.40
20013660--20013705	22	2.1	22	88	4	67	30	19	23	26	1.98
20021727--20021787	31	2.0	31	83	0	77	44	4	31	19	1.72
20023813--20023871	25	2.4	25	82	0	73	30	16	28	23	1.97
20028811--20028838	2	14.0	2	100	0	56	50	0	0	50	1.00
20028864--20029035	42	4.1	42	80	3	211	25	30	16	27	1.97
20028865--20029032	84	2.0	85	88	3	250	25	30	17	27	1.97
20030557--20030719	69	2.4	69	85	4	213	26	19	25	28	1.99
20031642--20031697	19	2.9	18	75	15	58	73	8	17	0	1.08
20032141--20032228	34	2.6	34	89	5	135	27	13	22	36	1.92
20032141--20032268	34	3.7	33	78	9	132	26	14	25	34	1.94
20032243--20032289	24	1.9	25	83	12	62	27	12	25	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20032489--20032547	25	2.4	25	85	5	84	49	13	22	15	1.79
20040496--20040738	120	2.0	122	92	3	411	31	7	10	50	1.65
20048252--20048302	26	2.0	25	85	11	68	66	9	9	13	1.44
20050007--20050309	152	2.0	150	98	1	588	33	5	23	37	1.77
20050668--20050779	43	2.6	43	88	0	170	25	18	35	20	1.95
20050671--20050792	43	2.8	42	82	4	154	25	17	36	20	1.94
20053563--20053588	2	13.0	2	100	0	52	50	0	0	50	1.00
20053633--20053764	42	3.1	42	84	0	147	23	22	32	21	1.98
20053685--20053786	42	2.4	42	83	0	123	22	22	35	19	1.96
20055414--20055452	2	19.5	2	100	0	78	51	0	0	48	1.00
20057916--20058051	43	3.2	41	82	8	148	22	35	16	25	1.95
20061859--20061898	20	2.0	20	90	4	64	10	22	5	62	1.46
20066119--20066157	20	2.0	20	89	0	60	25	17	28	28	1.98
20073432--20073494	2	31.5	2	87	6	92	50	46	3	0	1.17
20078117--20078178	32	2.0	32	96	3	117	32	25	9	32	1.88
20086842--20086867	3	8.7	3	100	0	52	34	0	30	34	1.58
20087918--20088097	36	5.2	36	81	5	185	42	12	7	38	1.70
20090703--20090821	37	3.2	37	90	0	184	22	37	10	29	1.87
20105933--20106124	95	2.0	95	100	0	384	32	13	19	34	1.91
20110688--20110712	13	1.9	13	100	0	50	48	0	0	52	1.00
20119489--20119529	21	1.9	22	90	5	66	51	7	24	17	1.70
20119489--20119533	20	2.2	21	84	11	58	55	6	22	15	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20119487--20119534	21	2.3	20	79	10	60	56	6	22	14	1.61
20134811--20134836	2	13.0	2	100	0	52	0	0	50	50	1.00
20135580--20135614	3	11.7	3	87	0	52	40	0	0	60	0.97
20154288--20154326	2	19.5	2	94	0	69	46	0	2	51	1.14
20157029--20157070	20	2.2	19	86	4	57	21	2	7	69	1.25
20162764--20162920	54	2.9	54	92	0	244	26	43	11	18	1.84
20164015--20164050	18	1.9	19	94	5	65	30	27	19	22	1.98
20164340--20164450	43	2.5	45	76	11	120	24	33	17	25	1.96
20165657--20165682	2	13.0	2	100	0	52	50	0	0	50	1.00
20169556--20169585	15	2.0	15	100	0	60	33	13	6	46	1.69
20171484--20171527	21	2.1	21	83	8	54	40	11	18	29	1.85
20182904--20182934	16	1.9	16	93	0	53	16	38	9	35	1.81
20184666--20184772	31	3.4	31	77	8	101	17	7	21	53	1.68
20187978--20188088	32	3.5	32	80	2	98	35	29	10	24	1.89
20188030--20188106	32	2.4	32	84	4	102	29	40	10	19	1.85
20210350--20210503	55	2.8	55	81	0	191	29	33	12	24	1.92
20218103--20218208	40	2.7	39	84	5	135	20	14	42	22	1.88
20218103--20218208	38	2.7	40	86	2	153	20	14	42	22	1.88
20220521--20220696	75	2.3	75	88	0	271	29	28	18	22	1.98
20220896--20220994	36	2.7	37	79	7	112	27	42	9	21	1.83
20222987--20223059	38	1.9	38	85	0	101	19	20	19	41	1.91
20234857--20234927	36	2.0	36	82	0	88	11	12	47	28	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20234959--20235054	36	2.7	36	91	0	156	20	14	36	28	1.92
20253626--20253706	40	2.0	42	87	4	121	33	13	13	39	1.84
20254204--20254457	68	3.7	67	84	5	314	34	18	10	36	1.85
20255434--20255509	21	3.7	21	80	3	100	35	11	17	35	1.86
20265813--20265837	10	2.5	10	100	0	50	20	48	8	24	1.76
20265915--20265958	20	2.2	19	88	8	61	4	22	4	68	1.27
20266803--20266954	54	2.8	54	91	1	252	20	13	39	26	1.90
20268043--20268204	54	3.0	54	90	3	263	24	44	12	17	1.84
20287385--20287681	60	4.9	60	89	3	418	27	34	15	23	1.95
20287385--20287685	123	2.5	119	88	4	442	26	33	15	24	1.95
20291571--20291608	11	3.6	11	82	10	53	0	21	0	78	0.74
20291571--20291611	20	2.0	20	85	0	55	0	21	0	78	0.76
20291708--20291746	20	1.9	21	84	5	53	2	20	2	74	1.06
20291687--20291762	28	2.7	26	78	17	64	2	25	1	71	1.07
20291690--20291759	30	2.2	32	80	9	83	2	24	1	71	1.08
20297734--20297957	60	3.8	60	91	1	337	25	33	17	23	1.96
20297734--20297957	119	1.9	118	88	2	342	25	33	17	23	1.96
20301805--20301834	2	15.0	2	100	0	60	50	0	0	50	1.00
20307688--20307790	38	2.6	39	86	6	138	21	17	38	22	1.93
20307761--20307865	54	1.9	54	96	0	192	18	13	45	22	1.84
20310289--20310338	25	2.0	26	84	4	66	76	4	2	18	1.04
20310307--20310346	20	2.0	20	85	5	53	75	2	2	20	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20310317--20310360	20	2.2	20	87	0	61	68	6	2	22	1.25
20310885--20310911	14	1.9	14	100	0	54	29	7	18	44	1.77
20312262--20312291	15	2.0	15	93	0	51	30	3	33	33	1.74
20314318--20314390	35	2.1	35	86	0	101	26	10	30	32	1.90
20314419--20314447	2	14.5	2	100	0	58	48	0	0	51	1.00
20323860--20323970	58	1.9	57	87	5	161	40	16	7	36	1.76
20324347--20324376	2	15.0	2	100	0	60	50	0	0	50	1.00
20324407--20324436	2	15.0	2	100	0	60	50	0	0	50	1.00
20328676--20328734	18	3.1	19	75	18	59	47	0	1	50	1.11
20329052--20329098	10	4.5	11	91	2	71	21	19	2	57	1.51
20340134--20340178	22	2.0	22	100	0	90	44	17	20	17	1.87
20340608--20340782	39	4.5	39	86	1	210	37	18	18	25	1.94
20348600--20348704	39	2.7	39	83	2	122	33	20	20	25	1.97
20349054--20349097	20	2.2	20	88	8	63	31	38	2	27	1.69
20349733--20349774	2	21.0	2	95	0	75	0	47	0	52	1.00
20351635--20351710	34	2.2	35	86	9	104	60	15	0	23	1.35
20352316--20352388	34	2.1	34	90	5	112	58	15	0	26	1.37
20359934--20360144	72	3.0	68	82	10	237	29	5	27	37	1.79
20359934--20360142	68	2.9	71	84	7	239	29	5	27	37	1.79
20371367--20371485	42	2.7	42	83	9	139	42	3	4	50	1.38
20376800--20376959	63	2.6	63	85	2	207	44	13	16	25	1.85
20386485--20386560	20	3.8	20	91	0	125	35	7	40	15	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20390198--20390252	21	2.6	21	88	5	85	21	10	21	45	1.82
20390397--20390467	21	3.3	21	81	13	74	28	2	18	50	1.61
20390728--20390771	21	2.1	21	87	8	63	34	20	9	36	1.84
20391239--20391310	36	2.0	36	86	0	99	27	9	26	36	1.88
20396112--20396136	2	12.5	2	100	0	50	48	0	0	52	1.00
20397980--20398033	27	2.0	27	85	7	74	44	1	1	51	1.22
20397989--20398054	34	2.0	32	82	14	80	45	3	0	51	1.16
20398124--20398176	22	2.5	21	80	14	63	41	1	0	56	1.10
20398082--20398230	43	3.5	43	69	9	126	34	1	4	60	1.24
20398057--20398242	85	2.2	84	82	7	225	37	1	3	58	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91