genome.fa.s3.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  47  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16495876--16495944	32	2.2	31	82	10	86	65	1	5	27	1.24
16495907--16496044	55	2.5	55	77	12	124	66	0	5	28	1.12
16496266--16496321	15	3.7	15	90	0	76	30	26	8	33	1.87
16497220--16497244	11	2.3	11	100	0	50	44	0	0	56	0.99
16499440--16499502	25	2.2	30	71	28	82	31	15	30	22	1.95
16499448--16499532	25	3.4	25	93	0	134	27	20	32	20	1.97
16501064--16501122	23	2.6	23	97	0	109	23	3	42	30	1.71
16508482--16508509	11	2.5	11	100	0	56	53	14	0	32	1.41
16515576--16515632	25	2.4	25	85	5	73	28	15	33	22	1.95
16520073--16520195	43	2.9	43	79	7	133	22	36	15	25	1.93
16520086--16520204	43	2.8	43	82	0	148	23	35	17	23	1.95
16522952--16523016	22	3.2	19	73	14	58	72	10	16	0	1.12
16523361--16523494	39	3.5	39	75	8	114	29	10	23	37	1.88
16527824--16527864	20	2.0	20	95	0	73	41	0	14	43	1.45
16527833--16527882	25	2.0	25	84	7	66	44	0	20	36	1.52
16528238--16528264	13	2.1	13	100	0	54	33	0	0	66	0.92
16530738--16531025	43	6.7	43	88	1	312	24	21	32	21	1.98
16563030--16563069	15	2.7	15	92	0	62	55	15	2	27	1.53
16564403--16564428	13	2.0	13	100	0	52	46	7	0	46	1.31
16569624--16569664	21	1.9	22	90	5	66	17	24	7	51	1.70
16572485--16572521	6	6.2	6	100	0	74	48	0	0	51	1.00
16574024--16574070	4	12.2	4	86	8	71	23	2	23	51	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16583411--16583449	4	9.5	4	94	5	69	28	0	23	48	1.51
16591291--16591324	16	2.1	17	88	5	52	5	50	2	41	1.42
16592612--16592644	11	2.8	12	90	9	59	0	15	0	84	0.61
16600498--16600531	3	11.3	3	87	0	50	61	0	0	38	0.96
16601411--16601449	21	2.0	20	85	10	53	53	12	2	30	1.52
16602919--16602966	22	2.2	22	92	0	78	25	10	22	41	1.85
16602988--16603293	26	12.4	26	75	10	268	35	22	14	27	1.93
16603010--16603314	73	4.2	73	85	2	396	36	22	14	26	1.93
16602988--16603277	47	6.0	49	75	12	217	34	23	14	27	1.94
16603289--16603338	21	2.4	21	86	0	73	42	30	12	16	1.84
16610816--16610861	20	2.3	20	92	0	74	30	4	19	45	1.70
16610906--16610958	28	1.9	27	88	3	79	30	18	22	28	1.98
16610906--16610964	28	2.1	28	84	6	75	30	20	23	25	1.98
16630206--16630235	15	2.0	15	93	0	51	63	0	23	13	1.29
16639991--16640159	85	2.0	84	98	0	320	34	13	19	32	1.90
16649487--16649526	2	20.0	2	89	0	62	47	0	5	47	1.24
16649567--16649687	42	2.9	42	87	0	170	22	33	21	22	1.97
16653611--16653651	2	20.5	2	100	0	82	51	0	0	48	1.00
16653686--16654091	61	6.7	61	92	0	659	23	17	33	26	1.96
16661984--16662029	19	2.4	20	82	10	60	54	0	2	43	1.12
16673517--16673739	60	3.8	60	88	3	314	25	30	19	24	1.98
16673517--16673739	116	1.9	115	86	5	313	25	30	19	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16674117--16674184	2	35.0	2	89	5	104	50	0	0	48	1.01
16675433--16675676	61	4.0	60	87	5	357	23	34	17	25	1.96
16676273--16676416	63	2.3	63	83	5	184	0	31	4	63	1.19
16676393--16676422	6	4.8	6	95	4	51	0	20	0	80	0.72
16676511--16676549	17	2.3	17	82	8	53	0	51	0	48	1.00
16676563--16676600	12	3.1	12	82	17	51	0	34	0	65	0.93
16676574--16676616	19	2.3	19	85	14	63	0	30	2	67	1.03
16676568--16676616	12	4.1	12	79	10	55	0	32	2	65	1.04
16676563--16676612	24	2.0	25	84	3	66	0	32	2	66	1.03
16676683--16676733	12	4.3	12	77	5	50	1	23	0	74	0.92
16676683--16676751	16	4.5	16	75	12	56	1	27	0	71	0.95
16676682--16676750	26	2.6	26	79	9	68	1	27	0	71	0.95
16678141--16678184	22	2.0	22	86	8	63	40	6	20	31	1.79
16678878--16679247	41	9.1	41	87	4	509	24	12	33	29	1.93
16678877--16679247	123	3.0	123	90	2	563	24	12	33	29	1.93
16684757--16684797	21	2.1	19	86	9	55	60	9	0	29	1.28
16691778--16691837	23	2.6	23	91	0	93	35	40	1	23	1.65
16691836--16691959	43	2.9	43	85	2	160	23	36	16	24	1.94
16693723--16693807	39	2.2	40	76	18	90	38	2	16	42	1.61
16698132--16698190	28	2.1	28	87	6	84	44	10	6	38	1.65
16698119--16698246	59	2.2	60	82	4	152	42	10	9	37	1.71
16698109--16698281	29	5.9	29	75	8	109	39	12	9	37	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16704811--16704869	20	2.9	21	89	5	93	27	18	16	37	1.93
16706381--16706421	2	21.5	2	90	9	68	0	46	0	53	1.00
16716735--16716782	7	7.3	7	76	19	50	52	0	0	47	1.00
16716875--16716940	26	2.6	26	82	15	84	45	1	1	51	1.19
16716950--16716992	8	5.0	8	81	13	50	4	13	0	81	0.84
16719225--16719249	13	1.9	13	100	0	50	48	8	0	44	1.32
16722149--16722198	2	25.5	2	81	18	61	48	0	4	48	1.20
16722295--16722406	54	2.1	54	91	0	179	21	12	40	25	1.88
16724016--16724075	19	3.2	19	64	17	52	50	8	10	31	1.66
16723999--16724075	38	2.0	38	94	0	136	53	6	9	31	1.58
16724599--16724632	17	2.0	17	88	0	50	29	0	0	70	0.87
16724626--16724660	15	2.4	14	85	4	52	48	0	0	51	1.00
16735225--16735268	17	2.6	17	85	0	61	25	2	0	72	0.96
16737234--16737266	2	16.5	2	100	0	66	51	0	0	48	1.00
16737839--16737875	18	2.1	18	100	0	74	21	24	27	27	1.99
16742026--16742069	18	2.4	19	92	7	81	29	11	0	59	1.32
16752660--16752721	26	2.4	26	94	0	106	32	40	3	24	1.71
16752956--16753078	42	2.9	42	92	0	210	22	33	21	21	1.97
16771053--16771098	20	2.3	20	96	0	83	28	4	21	45	1.71
16771143--16771201	28	2.1	28	84	6	75	30	18	23	27	1.98
16778277--16778461	91	2.0	91	96	0	343	33	8	20	37	1.82
16782570--16783002	217	2.0	217	94	0	767	36	12	20	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16783378--16783420	19	2.4	18	81	11	54	37	0	20	41	1.53
16784530--16784554	2	12.5	2	100	0	50	52	0	48	0	1.00
16785139--16785223	38	2.2	38	91	0	134	35	5	34	24	1.80
16786534--16786575	20	2.1	20	86	8	59	19	19	0	61	1.34
16786904--16787104	28	7.0	28	82	5	222	35	12	10	40	1.78
16786904--16787098	58	3.4	56	82	10	223	36	12	10	40	1.78
16794647--16794684	19	2.0	19	94	0	67	42	28	0	28	1.56
16797289--16797328	19	2.0	19	85	9	53	47	5	0	47	1.24
16802564--16802601	20	1.9	20	94	0	67	31	2	21	44	1.66
16830120--16830157	19	2.0	19	100	0	76	26	0	31	42	1.56
16833375--16833407	13	2.4	14	85	10	50	42	9	18	30	1.81
16834528--16834578	21	2.5	20	84	15	61	47	0	0	52	1.00
16834553--16834628	16	5.1	16	70	15	56	44	0	0	53	1.00
16834553--16834646	27	3.4	27	81	14	97	45	0	0	53	1.00
16834549--16834718	27	5.8	28	69	24	86	42	0	0	55	1.08
16834663--16834759	27	4.0	24	69	14	81	42	1	1	55	1.13
16834616--16834991	117	3.3	116	81	9	407	38	1	3	56	1.24
16834955--16835026	19	3.7	19	72	18	67	45	1	0	52	1.09
16834985--16835015	16	1.9	16	100	0	62	48	0	0	51	1.00
16844719--16844755	12	3.2	12	84	7	58	83	8	8	0	0.80
16845608--16845673	29	2.3	30	84	12	93	42	4	0	53	1.21
16847366--16847396	16	2.0	16	93	6	55	0	22	0	77	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16855874--16855923	9	5.9	8	84	11	64	82	0	18	0	0.68
16855878--16855915	13	3.0	13	96	3	69	78	0	21	0	0.74
16858687--16859444	377	2.0	377	98	0	1471	26	15	20	38	1.92
16860458--16860498	19	2.2	19	86	0	55	65	2	9	21	1.34
16860773--16860814	15	2.9	15	85	3	50	69	0	2	28	1.01
16863813--16863845	16	2.0	17	94	5	59	21	6	6	66	1.35
16864390--16864424	16	2.1	17	94	5	63	57	5	0	37	1.23
16864431--16864569	40	3.5	40	84	1	179	23	1	16	58	1.45
16864441--16864518	22	3.8	21	71	20	65	19	1	17	61	1.41
16868533--16868566	3	11.7	3	93	6	61	32	0	0	67	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91