genome.fa.s3.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  2  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64686--64927	47	5.1	47	77	5	222	26	30	16	26	1.97
64666--64927	94	2.8	94	81	0	272	26	31	16	25	1.97
64929--64973	23	2.0	23	90	0	72	24	31	13	31	1.93
64931--64983	23	2.3	23	83	0	61	26	32	9	32	1.88
65688--65748	29	2.1	29	82	11	72	44	18	6	31	1.75
66209--66345	9	15.7	9	74	11	79	67	2	2	27	1.13
68928--68974	19	2.5	19	86	6	60	68	4	23	4	1.26
75652--75692	19	2.2	19	86	4	57	46	2	4	46	1.37
91495--91545	23	2.2	23	82	6	59	19	15	1	62	1.41
97470--97570	26	3.9	26	70	17	86	33	13	10	41	1.80
97671--97798	53	2.4	54	84	7	161	27	14	16	42	1.86
97959--98131	80	2.1	81	91	3	276	44	15	13	26	1.83
98430--98487	25	2.4	24	83	11	66	74	0	1	24	0.92
98432--98486	19	2.9	19	78	7	60	74	0	1	23	0.91
98607--98670	5	12.4	5	76	15	51	75	0	4	20	0.99
98607--98670	11	6.2	11	75	17	57	75	0	4	20	0.99
99846--99929	39	2.2	39	97	0	159	35	22	4	36	1.76
107000--107026	9	3.0	9	100	0	54	11	11	22	55	1.66
109347--109384	17	2.2	18	85	4	51	57	0	39	2	1.12
113566--113595	3	10.0	3	100	0	60	66	0	0	33	0.92
114674--114753	40	2.0	40	100	0	160	30	15	12	42	1.83
119329--119372	8	5.4	8	79	15	54	15	2	2	79	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122548--124432	795	2.3	806	83	7	2296	41	18	16	23	1.90
124322--124352	10	3.2	10	90	9	55	61	0	38	0	0.96
124441--127267	822	3.5	815	84	3	3404	42	19	15	21	1.89
126835--126892	30	1.9	30	85	0	80	60	18	13	6	1.55
124441--127267	820	3.5	816	83	4	3397	42	19	15	21	1.89
135537--135562	2	13.0	2	100	0	52	0	0	50	50	1.00
146746--146782	2	18.5	2	100	0	74	48	0	0	51	1.00
147632--147657	11	2.4	11	100	0	52	46	7	11	34	1.69
155298--155333	4	9.0	4	100	0	72	50	25	0	25	1.50
162885--163045	17	9.1	17	66	18	55	28	2	0	68	1.02
162826--162968	68	2.1	70	81	5	166	30	2	0	66	1.11
162860--162986	68	1.9	67	80	4	148	29	3	0	66	1.12
162975--163035	24	2.5	24	76	7	70	32	4	0	62	1.17
172417--172474	30	2.0	29	83	10	73	39	3	0	56	1.16
175884--175989	38	2.7	38	84	8	135	21	14	39	24	1.90
189298--189337	21	1.9	21	85	10	55	15	52	5	27	1.63
214946--214992	23	2.0	24	84	12	62	44	2	4	48	1.34
214936--214995	23	2.6	22	80	12	59	46	3	3	46	1.35
215150--215208	22	2.4	25	75	21	61	47	3	3	45	1.36
214962--215481	215	2.4	214	86	4	699	40	7	5	45	1.57
222619--222654	15	2.3	16	90	4	56	11	22	2	63	1.39
227111--227142	3	10.7	3	93	0	55	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
237187--237297	43	2.6	43	84	2	143	27	19	33	19	1.96
237189--237310	43	2.8	43	81	2	138	27	18	35	19	1.95
237302--237346	23	2.0	23	91	8	74	22	2	44	31	1.65
253628--253934	90	3.4	90	66	14	234	23	32	34	9	1.87
253618--254020	181	2.2	182	93	1	675	24	32	33	9	1.88
254803--254832	13	2.3	13	100	0	60	53	6	6	33	1.53
254831--254868	18	2.1	18	85	9	51	65	0	7	26	1.19
254923--254962	4	10.5	4	94	5	66	72	0	0	27	0.85
254925--254962	18	2.1	18	85	14	51	73	0	0	26	0.83
255099--255147	25	1.9	26	91	4	82	73	0	0	26	0.83
255099--255158	20	2.9	19	79	20	68	73	0	0	26	0.84
255099--255168	31	2.4	31	81	13	87	72	0	0	27	0.84
255121--255167	16	2.8	18	81	15	64	72	0	0	27	0.85
255258--255332	20	3.6	21	66	25	52	70	0	6	22	1.10
255299--255328	12	2.4	13	94	5	53	66	0	3	30	1.07
256625--256757	60	2.2	60	95	0	239	33	18	21	27	1.96
256718--256809	39	2.4	39	92	0	148	30	20	22	26	1.98
257187--257310	43	2.9	43	85	7	155	21	36	16	25	1.94
259499--259537	20	1.9	21	89	5	62	10	17	7	64	1.48
262163--262193	2	15.5	2	100	0	62	48	0	0	51	1.00
262257--262306	24	2.1	24	81	7	57	38	8	4	50	1.51
273002--273035	18	1.9	17	94	5	59	70	0	23	5	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
273417--273449	16	2.1	17	88	11	52	39	0	6	54	1.25
273465--273505	17	2.5	17	88	4	57	48	0	4	46	1.23
273520--273555	3	12.0	3	100	0	72	66	0	0	33	0.92
273783--273814	15	2.1	15	94	0	55	43	0	3	53	1.16
273620--274265	330	2.0	323	83	7	810	44	7	7	40	1.61
281061--281098	20	2.0	20	89	5	60	50	18	13	18	1.78
288796--288890	44	2.2	44	100	0	190	27	42	10	20	1.84
295004--295057	27	2.0	27	92	0	90	51	12	16	18	1.75
300000--300061	3	20.7	3	89	0	97	64	1	32	1	1.13
303787--303837	26	2.0	26	92	0	84	7	23	1	66	1.28
307397--307425	3	9.7	3	100	0	58	68	0	31	0	0.89
309765--309793	14	2.0	15	93	6	51	48	0	48	3	1.18
325172--325205	2	17.0	2	87	0	50	44	2	0	52	1.16
325172--325208	12	3.1	12	92	0	56	43	5	0	51	1.24
325933--325966	9	3.9	9	88	3	52	61	0	38	0	0.96
333379--333487	35	3.1	35	84	2	130	45	17	13	22	1.84
333460--333518	26	2.3	26	87	0	82	40	20	16	22	1.91
333796--333852	29	2.0	29	86	6	80	19	24	7	49	1.73
361923--361954	14	2.3	14	94	0	55	0	15	0	84	0.63
369732--369773	2	21.0	2	100	0	84	0	50	0	50	1.00
371499--371532	2	17.0	2	100	0	68	50	0	0	50	1.00
372396--372465	31	2.2	31	90	7	106	64	1	0	34	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374333--374418	41	2.1	41	82	0	100	41	2	15	40	1.59
384220--384267	22	2.2	22	81	7	53	16	6	18	58	1.59
384228--384270	22	1.9	23	90	4	70	16	2	18	62	1.43
384255--384305	22	2.3	22	86	0	66	23	5	19	50	1.69
384316--384470	22	7.0	22	73	7	71	38	23	11	26	1.89
384602--384717	51	2.3	51	83	3	135	40	14	6	38	1.71
384952--384982	15	2.1	15	93	0	53	54	9	12	22	1.67
396298--396552	119	2.1	121	93	1	433	34	18	26	20	1.96
396468--396604	73	1.9	73	89	0	211	35	15	28	21	1.94
396739--396934	97	2.0	96	87	2	277	35	15	19	30	1.92
408143--408361	110	2.0	110	95	0	393	20	17	16	45	1.86
415720--415769	2	26.0	2	84	15	70	48	0	2	50	1.12
420680--420728	2	26.0	2	84	12	68	48	0	2	48	1.12
420681--420735	9	5.9	9	83	12	67	49	0	1	49	1.11
423556--423608	2	26.5	2	92	0	88	50	0	1	47	1.12
430564--430609	23	2.0	23	91	0	74	36	13	10	39	1.79
436256--436303	23	2.1	23	88	0	69	16	25	12	45	1.82
444596--444639	23	1.9	23	100	0	88	13	18	15	52	1.75
445207--445247	22	1.9	21	95	5	73	43	19	19	17	1.88
446740--446788	18	2.5	20	83	12	66	69	4	2	24	1.17
448695--448721	9	3.0	9	100	0	54	44	0	33	22	1.53
455264--455303	21	1.9	21	89	0	62	7	12	15	65	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
459807--459846	21	1.9	21	85	10	55	7	15	15	62	1.53
461626--461661	17	2.1	17	100	0	72	11	22	5	61	1.50
502224--502253	2	15.0	2	100	0	60	50	0	0	50	1.00
519745--519968	80	2.8	80	86	0	322	25	20	17	36	1.94
526494--526545	8	6.5	8	78	12	54	75	3	1	19	1.06
527627--527678	14	3.6	14	78	12	52	50	0	0	50	1.00
528738--528795	18	3.2	18	72	0	53	39	22	10	27	1.86
532928--532978	24	2.1	24	100	0	102	15	7	29	47	1.74
538613--538655	21	2.2	19	83	8	50	62	6	0	30	1.21
538880--538917	20	1.9	20	84	10	51	42	2	7	47	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91