genome.fa.s3.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  66  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23832195--23832254	15	4.1	15	83	8	70	28	1	0	70	0.97
23832214--23832258	23	2.0	23	91	8	74	24	0	0	75	0.80
23832189--23832237	16	3.1	15	81	18	64	28	2	0	69	1.00
23832386--23832423	17	2.2	18	90	4	60	21	0	2	76	0.91
23832391--23832425	14	2.5	15	90	9	56	20	0	0	80	0.72
23832788--23832841	14	4.0	13	83	9	72	25	1	0	72	0.95
23832790--23832843	25	2.2	25	86	6	74	25	1	0	72	0.95
23832788--23832841	28	2.0	27	88	3	81	25	1	0	72	0.95
23833961--23834001	21	2.0	22	85	9	59	17	2	0	80	0.82
23833955--23834041	27	3.2	26	75	15	70	18	3	3	74	1.10
23834307--23834332	5	5.2	5	100	0	52	19	0	0	80	0.71
23847488--23847968	240	2.0	241	97	0	919	41	12	19	27	1.87
23858462--23858497	14	2.6	14	90	0	54	58	2	0	38	1.13
23861816--23861894	32	2.4	33	79	12	99	31	1	1	65	1.08
23865597--23865667	23	3.1	23	67	15	65	39	2	2	54	1.29
23865695--23865786	44	2.1	43	80	11	100	45	3	2	48	1.30
23872984--23873184	82	2.4	82	82	4	217	33	11	10	44	1.76
23876241--23876290	17	3.0	17	69	13	50	36	10	4	50	1.55
23876973--23877029	27	2.2	26	87	6	80	42	0	7	50	1.29
23884522--23884570	24	2.0	26	84	8	66	26	6	2	65	1.27
23895441--23895551	29	3.8	29	80	2	107	43	10	27	18	1.83
23895434--23895554	58	2.1	57	81	4	136	44	9	28	16	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23896150--23896179	2	15.0	2	100	0	60	50	0	0	50	1.00
23896258--23896287	2	15.0	2	100	0	60	50	0	0	50	1.00
23896145--23896359	108	2.0	107	100	0	421	38	12	10	39	1.77
23909615--23909652	19	2.0	19	89	0	58	44	23	2	28	1.67
23910232--23910256	11	2.3	11	100	0	50	20	32	0	48	1.50
23910482--23910575	35	2.8	32	77	14	109	26	11	26	35	1.91
23910464--23910575	32	3.4	33	75	12	113	25	12	26	35	1.91
23910464--23910602	67	2.1	67	89	2	208	27	13	25	33	1.93
23912017--23912082	25	2.7	23	78	17	62	19	6	1	72	1.13
23913445--23913491	19	2.6	18	78	18	53	14	4	0	80	0.85
23914001--23914102	34	3.0	34	98	1	195	41	9	8	40	1.69
23914001--23914085	12	7.4	12	63	10	52	41	9	7	42	1.64
23915596--23915714	43	2.8	43	83	2	150	24	16	37	21	1.93
23918232--23918286	24	2.3	24	90	0	83	36	20	18	25	1.94
23918481--23918548	3	22.7	3	96	0	127	64	0	1	33	1.02
23919567--23919604	17	2.4	17	86	8	53	36	7	13	42	1.73
23922182--23922306	42	3.0	42	85	2	162	23	20	32	24	1.98
23931209--23931239	13	2.4	13	94	0	53	29	25	25	19	1.99
23937014--23937054	17	2.4	17	80	19	50	39	24	0	36	1.56
23941464--23941522	29	2.1	29	87	3	84	40	22	6	30	1.79
23942544--23942608	28	2.3	28	84	5	87	23	10	24	41	1.86
23943357--23943554	2	100.0	2	73	11	122	44	3	6	45	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23943357--23943554	16	11.5	16	73	15	137	44	3	6	45	1.45
23943361--23943612	126	2.0	125	99	0	495	44	5	6	43	1.53
23948594--23948671	31	2.5	31	93	2	131	53	12	1	32	1.47
23948818--23948923	31	3.4	31	88	3	151	38	12	12	36	1.80
23949693--23949721	2	14.5	2	100	0	58	51	0	0	48	1.00
23956774--23956866	45	2.1	45	83	4	116	26	4	27	40	1.75
23961159--23961201	22	2.0	22	86	9	61	48	9	13	27	1.73
23961511--23961541	15	2.1	15	93	0	53	48	19	3	29	1.64
23962657--23962701	23	2.0	23	86	0	63	35	4	20	40	1.72
23962948--23963573	27	23.5	27	68	8	183	34	10	16	38	1.84
23962928--23963053	27	4.7	27	72	13	82	33	10	16	39	1.83
23963043--23963138	28	3.5	28	72	9	81	36	7	16	39	1.77
23962911--23963108	80	2.5	80	78	8	190	35	8	17	38	1.80
23962964--23963160	55	3.6	55	77	7	172	34	9	17	39	1.82
23963064--23963183	55	2.2	55	81	3	134	35	9	16	39	1.81
23963094--23963396	81	3.8	82	77	7	250	33	11	17	38	1.85
23963377--23963473	25	3.8	25	72	10	79	36	12	15	36	1.85
23971422--23971570	55	2.7	55	84	2	165	36	10	14	38	1.80
23971404--23971808	27	15.1	27	71	9	247	34	11	16	37	1.85
23971483--23971808	82	4.1	82	82	3	362	34	11	16	37	1.86
23971443--23971738	55	5.4	54	78	5	238	35	11	14	38	1.83
23971836--23971941	28	3.8	28	76	9	92	42	8	12	36	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23971839--23971946	55	1.9	56	84	1	146	40	8	13	37	1.75
23971847--23971950	28	3.8	27	78	7	93	42	7	12	37	1.72
23971872--23971953	28	3.0	27	80	7	94	41	8	13	36	1.75
23971455--23971965	27	18.9	28	71	9	118	36	11	16	36	1.84
23973700--23973901	73	2.8	73	86	0	262	25	21	15	37	1.93
23991512--23991551	20	2.0	20	90	0	62	20	35	5	40	1.74
23992136--23992244	37	2.9	37	84	12	161	27	9	37	25	1.86
23992519--23992592	22	3.5	22	75	14	75	31	21	21	25	1.98
24004475--24004619	73	2.0	73	90	0	227	24	19	18	37	1.94
24006534--24006584	23	2.2	24	86	10	70	13	9	7	68	1.38
24007875--24007971	46	2.1	45	84	5	124	31	8	20	39	1.82
24007894--24007963	23	3.1	22	70	13	61	32	10	21	35	1.87
24011602--24011644	11	4.1	11	82	11	54	0	18	0	81	0.69
24011602--24011673	16	4.7	15	77	14	67	0	23	0	76	0.79
24011617--24011675	4	14.2	4	80	8	57	0	27	0	72	0.84
24011601--24011678	20	4.2	19	77	14	81	0	26	0	73	0.84
24022068--24022097	14	2.1	14	100	0	60	36	6	13	43	1.70
24024837--24024878	15	3.0	14	80	10	50	52	0	0	47	1.00
24029806--24029848	13	3.3	12	83	9	50	6	13	0	79	0.93
24029990--24030043	21	2.5	22	85	8	67	83	0	11	5	0.80
24030195--24030341	71	2.1	71	97	0	276	34	26	21	17	1.96
24036885--24036960	38	2.0	38	97	0	143	39	17	2	40	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24043205--24043384	97	1.9	97	87	0	270	43	7	13	35	1.73
24043393--24043447	28	2.0	28	85	3	76	49	9	10	30	1.69
24044691--24044716	4	6.5	4	100	0	52	23	0	0	76	0.78
24066688--24066799	34	3.3	34	87	0	161	33	14	19	33	1.92
24066688--24066828	34	4.1	34	84	0	156	30	14	19	35	1.92
24071513--24071543	10	3.1	10	95	0	53	22	0	0	77	0.77
24076759--24076807	15	3.3	15	77	8	55	46	16	0	36	1.47
24077960--24077984	13	1.9	13	100	0	50	48	0	0	52	1.00
24079137--24079200	30	2.2	30	83	5	78	45	20	7	26	1.78
24080229--24080270	22	1.9	22	90	9	68	38	4	9	47	1.57
24083439--24083466	6	4.7	6	100	0	56	85	0	14	0	0.59
24093537--24093585	20	2.5	21	80	12	59	36	4	2	57	1.30
24096347--24096386	21	1.9	21	84	0	53	27	12	17	42	1.85
24096397--24096445	22	2.2	22	88	0	71	28	12	14	44	1.81
24096498--24096601	45	2.3	45	81	8	113	25	9	29	34	1.88
24096498--24096601	22	4.6	22	80	9	111	25	9	29	34	1.88
24096601--24096651	22	2.3	22	86	0	75	49	21	5	23	1.71
24096603--24096673	22	3.3	22	78	4	63	47	21	8	22	1.77
24102827--24102865	2	19.5	2	100	0	78	48	0	0	51	1.00
24106311--24106364	22	2.4	23	79	11	60	51	3	3	40	1.37
24107568--24107624	29	2.0	28	86	3	78	36	15	15	31	1.90
24107620--24107663	12	3.7	12	84	0	61	20	31	2	45	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24107813--24107858	24	1.9	24	86	0	65	21	28	26	23	1.99
24110119--24110313	74	2.7	73	79	3	194	20	18	18	43	1.89
24119003--24119176	74	2.4	74	90	0	260	22	21	17	38	1.93
24120873--24120947	21	3.7	21	68	10	66	38	26	18	16	1.91
24120857--24120947	39	2.3	39	88	0	137	37	27	17	17	1.92
24123303--24123332	2	15.5	2	93	6	53	50	0	0	50	1.00
24123787--24123852	31	2.1	33	83	11	84	18	22	9	50	1.75
24123815--24123903	25	3.4	25	84	4	106	15	22	12	49	1.78
24123947--24123994	22	2.2	22	92	0	78	10	45	8	35	1.68
24124104--24124193	24	2.9	34	66	30	92	32	24	13	30	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91