genome.fa.s3.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  28  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9608083--9608214	67	2.0	67	92	3	221	33	26	14	25	1.94
9612024--9612128	37	2.8	36	84	5	129	24	37	10	27	1.88
9613597--9613695	38	2.6	38	83	3	117	21	15	40	23	1.90
9618307--9618448	29	4.9	28	83	6	167	40	10	11	37	1.77
9618307--9618461	59	2.7	58	84	4	204	40	9	10	39	1.73
9618307--9618458	28	5.3	28	81	10	155	40	9	11	38	1.74
9618625--9618657	17	1.9	17	88	11	50	39	3	15	42	1.62
9624598--9624638	20	2.0	20	85	0	55	43	2	12	41	1.55
9625389--9625601	35	6.0	35	79	5	221	36	7	12	44	1.70
9630789--9630851	2	30.5	2	90	3	90	49	3	0	46	1.18
9638593--9638619	2	13.5	2	100	0	54	51	0	0	48	1.00
9639622--9639659	18	2.2	18	90	4	60	21	7	0	71	1.11
9639623--9639668	22	2.1	22	92	8	76	21	6	2	69	1.22
9646530--9646627	38	2.5	38	79	9	101	22	35	17	24	1.95
9649810--9649856	18	2.8	17	81	12	53	19	12	0	68	1.21
9649824--9649865	22	1.9	22	90	9	68	21	7	2	69	1.25
9653228--9653275	22	2.2	22	92	0	78	31	12	18	37	1.88
9663137--9663212	11	7.2	11	73	15	54	0	31	0	68	0.90
9663137--9663212	16	4.8	16	70	12	50	0	31	0	68	0.90
9663632--9663656	12	2.1	12	100	0	50	24	0	0	76	0.80
9667495--9667532	20	2.0	20	89	5	60	42	15	0	42	1.47
9677572--9677609	20	2.0	20	89	5	60	42	15	0	42	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9683214--9684242	527	2.0	527	92	0	1729	35	8	19	36	1.83
9693377--9693430	17	3.0	17	77	15	54	51	0	11	37	1.37
9702696--9702755	23	2.6	23	89	0	84	33	38	1	26	1.67
9702752--9702883	43	3.1	43	82	2	149	19	35	19	25	1.95
9704627--9704697	35	2.0	35	86	0	97	30	26	12	29	1.93
9706686--9706725	20	2.0	20	95	0	71	37	10	20	32	1.85
9706984--9707023	20	2.0	20	90	0	62	42	7	12	37	1.71
9710436--9710573	71	2.0	70	91	0	213	41	7	17	33	1.77
9711644--9711745	43	2.4	43	88	0	141	26	20	35	17	1.95
9711755--9711814	23	2.6	23	89	0	84	26	1	38	33	1.67
9719504--9719616	43	2.6	43	83	2	147	23	17	38	20	1.93
9719626--9719684	23	2.6	23	86	0	73	25	1	38	33	1.66
9721355--9721542	54	3.8	45	85	10	178	24	40	13	20	1.89
9721413--9721502	29	3.2	29	67	17	82	24	41	14	20	1.89
9721400--9721543	54	2.7	54	94	0	252	24	40	13	20	1.89
9721442--9721527	25	3.3	25	65	17	66	23	43	12	20	1.86
9725803--9725936	43	3.1	43	90	3	200	25	16	32	25	1.96
9736853--9736939	25	3.5	25	93	0	138	17	26	12	43	1.84
9737133--9737179	24	1.9	25	83	12	62	31	25	10	31	1.90
9737166--9737242	34	2.3	34	88	2	111	32	27	10	29	1.90
9737388--9737447	25	2.5	23	81	10	68	30	23	6	40	1.80
9747178--9747369	74	2.6	74	84	1	242	41	17	18	22	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9750388--9750453	27	2.3	29	84	7	91	7	25	13	53	1.66
9750443--9750481	10	4.1	9	87	12	60	2	12	0	84	0.72
9750443--9750493	20	2.6	21	87	9	72	1	15	0	82	0.76
9750441--9750494	10	5.2	11	82	13	53	1	18	0	79	0.82
9750441--9750493	15	3.6	15	76	18	58	1	16	0	81	0.79
9750647--9750726	34	2.4	34	83	12	94	35	27	11	26	1.90
9750737--9750847	35	3.2	34	78	6	107	44	27	4	23	1.73
9751091--9751125	2	17.5	2	100	0	70	48	0	0	51	1.00
9753033--9753057	13	1.9	13	100	0	50	48	8	0	44	1.32
9754280--9754317	19	2.0	19	100	0	76	42	31	0	26	1.56
9755395--9755514	31	3.9	31	80	0	123	22	25	22	29	1.99
9755636--9755961	68	4.8	68	79	7	292	34	18	10	36	1.85
9757205--9757235	16	1.9	16	93	0	53	67	16	3	12	1.35
9762187--9762416	42	5.3	42	70	10	151	42	3	8	45	1.53
9762329--9762681	127	2.8	124	77	11	290	39	6	10	44	1.64
9762575--9762645	37	1.9	37	85	0	97	46	2	8	42	1.49
9762495--9762775	127	2.2	125	80	9	295	42	6	8	42	1.60
9762707--9762769	33	1.9	33	83	0	81	50	0	9	39	1.35
9770107--9770133	2	13.5	2	100	0	54	0	48	0	51	1.00
9774094--9774259	82	2.0	82	92	2	280	36	9	15	38	1.81
9783096--9783147	2	26.0	2	100	0	104	50	0	0	50	1.00
9784512--9784615	43	2.4	43	82	3	120	24	21	36	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9787425--9787560	72	1.9	72	84	3	184	37	24	15	22	1.93
9799796--9799838	22	2.0	22	95	0	77	27	11	20	39	1.88
9812797--9812855	26	2.3	26	79	5	66	1	28	3	66	1.18
9814749--9814982	45	5.3	45	73	6	172	28	18	21	32	1.97
9822492--9822597	38	2.7	40	79	2	117	23	16	37	22	1.93
9824647--9824813	68	2.5	68	80	2	192	35	15	10	37	1.83
9828986--9829144	44	3.6	44	96	0	282	24	9	36	29	1.87
9829388--9829569	74	2.5	74	79	7	194	24	23	24	28	2.00
9831085--9831217	63	2.1	65	91	2	216	46	18	9	25	1.79
9841979--9842019	17	2.4	17	95	0	73	14	9	29	46	1.77
9844294--9844408	36	3.2	35	79	6	124	24	14	32	28	1.95
9844652--9844802	74	2.0	74	81	5	171	27	21	24	26	2.00
9846525--9846583	29	2.0	29	83	3	73	42	0	22	35	1.54
9847907--9848152	49	5.0	48	78	6	217	26	8	24	40	1.83
9847907--9848214	98	3.1	96	78	4	312	25	7	24	42	1.80
9857406--9857445	13	2.9	13	85	10	53	57	7	0	35	1.27
9863362--9863404	19	2.2	19	87	8	59	53	0	32	13	1.41
9867634--9867677	2	22.0	2	90	0	70	0	50	0	50	1.00
9867713--9867750	2	19.0	2	89	10	60	47	2	0	50	1.15
9867713--9867750	15	2.7	14	92	8	60	47	2	0	50	1.15
9867713--9867750	17	2.2	17	95	0	67	47	2	0	50	1.15
9881222--9881332	32	3.4	31	77	11	114	34	26	12	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9881184--9881333	67	2.2	66	84	4	185	34	26	12	27	1.92
9881222--9881349	35	3.8	33	77	12	118	33	24	12	29	1.92
9881222--9881372	67	2.2	69	85	4	200	34	25	13	26	1.93
9881929--9881958	9	3.4	9	95	4	53	80	0	6	13	0.91
9884078--9884129	28	1.9	27	84	7	70	28	21	19	30	1.97
9884175--9884220	20	2.3	20	92	0	74	45	19	6	28	1.75
9887880--9887919	21	2.0	20	85	5	53	30	12	20	37	1.89
9889035--9889118	39	2.2	39	86	4	125	22	28	20	28	1.98
9894490--9894602	42	2.7	42	85	0	145	23	19	32	23	1.97
9894917--9894959	21	2.0	21	81	0	50	23	27	20	27	1.99
9896349--9896451	32	3.1	32	78	8	125	24	13	28	33	1.93
9896348--9896499	67	2.3	67	85	0	205	26	13	25	33	1.94
9899032--9899192	80	2.0	81	85	6	220	44	10	11	33	1.74
9900906--9900952	22	2.0	24	84	15	64	19	25	6	48	1.72
9904476--9904532	25	2.3	25	82	14	73	14	28	14	43	1.83
9904551--9904583	15	2.1	16	94	5	59	0	27	0	72	0.85
9904551--9904597	14	3.3	14	85	11	60	0	31	0	68	0.90
9904757--9904837	33	2.4	34	87	8	112	30	29	12	27	1.93
9904854--9904927	35	2.1	35	87	5	105	37	29	8	24	1.84
9913771--9913799	2	14.5	2	100	0	58	51	0	0	48	1.00
9913929--9913957	2	14.5	2	100	0	58	51	0	0	48	1.00
9913649--9913963	158	2.0	157	100	0	621	40	17	8	33	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9914416--9914443	13	2.2	13	100	0	56	32	32	14	21	1.93
9914905--9915001	32	2.9	32	81	9	124	26	13	26	32	1.93
9914909--9915060	67	2.3	67	87	0	205	26	13	26	33	1.93
9920578--9920615	19	2.0	19	94	0	67	28	0	28	42	1.56
9949200--9949237	18	2.1	18	100	0	76	34	5	26	34	1.79
9950348--9950397	21	2.4	21	90	9	77	40	14	6	40	1.70
9950443--9950582	35	4.0	35	92	0	208	30	34	9	26	1.88
9951593--9951629	19	1.9	19	89	10	58	70	2	24	2	1.14
9962087--9962128	21	2.0	21	85	4	57	50	11	4	33	1.60
9962630--9962733	2	51.0	2	96	3	190	49	0	0	49	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91