genome.fa.s3.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  14  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4389822--4389866	21	2.2	20	84	4	54	48	6	4	40	1.49
4389973--4390008	16	2.2	17	90	5	56	47	5	2	44	1.41
4390343--4390740	204	1.9	204	88	4	604	40	6	6	46	1.56
4390642--4390838	100	2.0	100	87	2	290	39	7	7	45	1.61
4390737--4391116	198	1.9	201	86	1	550	40	7	5	46	1.56
4391022--4391064	21	2.3	19	78	21	54	44	4	0	51	1.22
4390907--4391118	118	1.8	114	86	4	307	40	7	5	47	1.54
4396233--4396272	15	2.7	15	96	0	71	12	27	22	37	1.90
4396438--4396552	24	4.9	24	76	6	110	31	15	28	24	1.96
4396420--4396570	69	2.2	69	89	0	221	31	15	30	22	1.95
4398127--4398176	26	1.9	26	95	0	91	24	14	4	58	1.53
4398120--4398185	26	2.8	23	79	18	73	24	13	4	57	1.55
4399054--4399097	11	4.3	11	78	21	51	68	9	22	0	1.18
4399215--4399254	21	2.0	21	85	9	57	22	10	15	52	1.71
4405244--4405323	40	2.0	40	92	0	133	33	27	13	25	1.93
4405285--4405573	48	5.7	48	71	15	215	37	24	11	26	1.90
4405262--4405591	103	3.2	103	89	3	511	36	24	12	26	1.91
4419201--4419225	13	1.9	13	100	0	50	44	0	8	48	1.32
4428993--4429053	8	7.9	8	77	15	58	1	32	1	63	1.13
4428993--4429048	23	2.5	23	85	8	71	1	32	0	66	1.03
4438529--4438581	28	1.9	28	88	3	81	28	22	18	30	1.98
4439808--4439837	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4448498--4448541	22	2.0	22	86	0	61	43	18	6	31	1.76
4450933--4450978	20	2.3	20	88	0	65	45	17	6	30	1.73
4454942--4455007	32	2.1	32	100	0	132	30	9	9	51	1.64
4455665--4455722	30	1.9	30	85	0	80	51	3	12	32	1.56
4456483--4456521	20	2.0	20	84	0	51	20	10	17	51	1.74
4483321--4483394	2	37.5	2	84	2	96	48	1	1	47	1.18
4485360--4485675	68	4.7	68	78	5	232	39	9	15	35	1.81
4485813--4485882	31	2.3	31	80	2	79	27	20	31	21	1.98
4490165--4490203	21	1.9	20	89	5	60	17	10	25	46	1.80
4503177--4503207	15	2.1	15	93	0	53	51	3	0	45	1.17
4509216--4509264	19	2.6	18	78	9	53	55	0	4	40	1.19
4511078--4511134	31	1.9	30	85	7	80	64	0	5	29	1.15
4512630--4512675	22	2.0	24	83	8	60	52	0	2	45	1.13
4513171--4513212	20	2.2	20	83	8	61	45	0	0	54	0.99
4515155--4515211	31	1.9	30	85	7	80	64	0	5	29	1.15
4519800--4519847	21	2.3	20	79	13	53	66	6	0	27	1.15
4526792--4527127	31	10.8	31	89	0	492	26	14	19	39	1.90
4534121--4534165	23	2.0	23	82	4	56	51	0	0	48	1.00
4535981--4536153	83	2.1	83	96	0	319	48	6	7	36	1.58
4536338--4536377	18	2.2	18	86	8	55	77	0	0	22	0.77
4537127--4537309	57	3.3	56	84	6	228	33	11	11	43	1.77
4539096--4539127	1	32.0	1	93	0	55	0	0	3	96	0.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4539737--4539854	62	1.9	63	92	1	202	25	11	23	39	1.87
4539826--4539877	22	2.4	22	86	0	68	17	17	25	40	1.90
4541481--4541531	22	2.3	22	83	6	59	13	9	27	49	1.74
4541514--4541565	22	2.4	22	90	6	79	19	11	23	46	1.82
4541706--4541769	22	2.9	22	95	4	112	12	14	28	45	1.81
4541728--4542108	185	2.1	180	84	4	487	20	13	26	40	1.89
4546250--4546288	20	2.0	20	94	0	69	20	7	35	35	1.81
4546358--4546390	15	2.2	15	94	0	57	33	9	18	39	1.82
4546399--4546454	22	2.5	22	85	0	76	16	14	26	42	1.86
4547773--4547797	13	1.9	13	100	0	50	48	0	0	52	1.00
4553284--4553321	19	2.0	19	94	0	67	28	0	28	42	1.56
4561961--4562221	129	2.0	129	92	0	432	22	19	31	27	1.97
4563604--4563657	22	2.5	22	81	0	63	18	11	22	48	1.79
4567850--4567895	20	2.3	20	96	0	83	45	21	4	28	1.71
4572127--4572185	25	2.4	25	78	16	68	16	25	13	44	1.85
4572380--4572457	33	2.4	33	84	4	95	30	28	12	28	1.93
4572397--4572481	33	2.5	33	86	3	116	32	28	10	28	1.90
4572488--4572569	35	2.3	35	83	4	112	43	28	9	18	1.81
4572552--4572598	22	2.1	22	84	0	58	46	25	12	14	1.80
4574617--4574695	23	3.4	23	80	0	77	30	25	15	29	1.96
4621714--4621767	26	2.1	26	89	0	81	12	29	5	51	1.63
4623291--4623338	21	2.2	22	82	10	55	10	35	2	52	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4624370--4624413	19	2.2	20	80	4	54	20	6	6	65	1.39
4624371--4624413	20	2.2	20	83	8	52	18	6	6	67	1.37
4629590--4629622	16	2.0	17	88	5	50	75	0	21	3	0.93
4634152--4634191	19	2.1	20	81	13	57	50	0	2	47	1.14
4634594--4634631	20	1.9	20	94	0	67	28	5	18	47	1.70
4634684--4634736	28	1.9	27	88	3	79	33	20	18	26	1.96
4645597--4645636	21	1.9	21	89	0	62	30	27	10	32	1.89
4645939--4646045	29	3.7	29	70	7	76	20	31	22	25	1.98
4649374--4649426	22	2.3	23	78	9	56	32	7	11	49	1.67
4649952--4650004	27	2.0	27	96	0	97	47	24	13	15	1.81
4660936--4660960	13	1.9	13	100	0	50	44	0	8	48	1.32
4663098--4663155	11	5.5	11	74	14	59	0	32	0	67	0.91
4663098--4663161	4	16.8	4	72	15	55	0	31	0	68	0.90
4663098--4663172	20	3.7	20	89	3	96	0	30	1	68	0.98
4670920--4670961	18	2.3	19	83	4	50	42	0	0	57	0.99
4677912--4677961	21	2.4	21	82	0	73	38	12	10	40	1.76
4679796--4679837	20	2.2	19	86	4	57	21	2	7	69	1.25
4681831--4681916	34	2.5	34	83	3	102	36	23	12	27	1.91
4688870--4688921	21	2.5	20	75	6	50	42	5	19	32	1.75
4694892--4694929	19	2.0	19	94	0	67	15	13	21	50	1.78
4694811--4694968	79	2.0	79	92	0	262	27	8	22	41	1.82
4698559--4698604	20	2.3	20	88	0	65	32	4	17	45	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4707779--4707869	12	7.2	12	75	16	53	18	6	2	72	1.17
4707823--4707871	15	3.5	15	70	16	50	18	4	2	75	1.06
4708088--4708121	16	2.1	16	89	10	52	17	0	0	82	0.67
4708075--4708122	20	2.4	21	82	10	64	18	0	2	79	0.84
4708073--4708122	12	4.1	13	75	15	52	18	0	2	80	0.82
4709414--4709686	38	7.2	38	86	3	370	40	19	15	24	1.90
4721693--4721752	22	2.7	22	76	16	61	25	6	0	68	1.14
4721687--4721757	27	2.6	27	76	12	74	22	5	0	71	1.06
4721723--4721779	22	2.6	22	78	13	55	19	7	1	71	1.17
4721687--4721765	27	2.9	26	74	10	70	21	7	0	70	1.11
4722046--4722141	15	7.0	14	73	18	69	20	5	2	71	1.15
4722047--4722141	8	12.2	8	69	19	51	20	5	2	72	1.14
4722336--4722378	15	2.9	14	80	10	50	18	2	2	76	1.00
4722338--4722380	6	6.7	6	82	15	50	18	2	2	76	1.00
4722880--4723088	75	2.8	75	82	2	231	14	44	22	18	1.86
4722880--4723088	38	5.5	38	80	2	206	14	44	22	18	1.86
4723265--4723291	14	1.9	14	100	0	54	18	0	14	66	1.25
4723586--4723617	16	2.1	15	94	5	55	0	15	0	84	0.63
4726589--4726634	21	2.2	21	84	7	58	60	2	15	21	1.45
4728512--4728582	35	2.0	35	83	5	90	33	25	9	30	1.88
4729075--4729119	20	2.2	20	88	0	63	24	22	13	40	1.90
4730713--4730750	19	2.0	19	94	0	67	28	0	28	42	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4730925--4730969	20	2.2	20	96	0	81	33	4	20	42	1.72
4740677--4740733	21	2.8	20	72	5	51	29	15	7	47	1.72
4743761--4743813	6	8.5	6	75	8	52	62	13	1	22	1.40
4746653--4746688	19	1.9	18	94	5	63	13	36	11	38	1.81
4747489--4747611	43	2.9	43	85	4	160	23	19	34	21	1.96
4755216--4755342	43	3.0	43	91	1	193	23	20	34	21	1.96
4755374--4755423	2	25.0	2	87	0	73	50	4	2	44	1.32
4765572--4765617	21	2.2	20	85	11	58	28	0	8	63	1.24
4776331--4776372	2	20.5	2	95	4	75	47	0	2	50	1.14
4781232--4781345	49	2.3	50	83	4	133	35	18	14	31	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91